Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d045490_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:9:24406700:24409358:-1 gene:Zm00001d045490 gene_biotype:protein_coding transcript_biotype:protein_coding description:UV-stimulated scaffold protein A homolog
Sequence	ATGCCGCGCCCGATGGCCTCCTCCTCCGCCAGGGGCCGGGCGAAGGATTCCGACCCCTCA TCATCCTCGGCAGCGGCGGATTCCTCCATGGCATCCCTAATCGAGCGCGCCACCTCCACC ACGGCGCACGCCGTCGACCCGGTGCTCCTCCGCGCCATCAAATCTTCGGCCCGTGCCTCC GATGCCGCCATCCGGGACGCGTTCCGCCTCATCCTCTCCCTCATGTCCAAGCCCCACTCC CACGTGCGGCTCCTCGCCTTCAGCATCGCCGACGAGCTCTTCATGCGCTCCAAGCTCTTC CGCTCCCTCCTTGCTGACTCGCTCGACGGCTTCCTCCCGCTCGCCGTCGGGTTCCGCCGA GCAAACCCCCTCCCGCCGCCGACCACGTCCGCTGCCTTACTCCGGAAGGCCGCCGTCCAG GCGCTCGAGCGCTGGCACCATCTCTTTGGTGCGCACTACCGCCAGCTCCGCCTGGCCGTC GAGTACCTCAAGGAGTCCGCGCGCGTCCAGTTCTCTGGTCTGCGGGCCACCGTTGATGCT CGTGCAGCTCGTGAGGCTCGCATGCAGGAGATCTATGCTGGCAAGGTTGAGCAGTTGCGT GAAAACCTTGCGTCAATCAAGGCGGAGATTCGGTCCACGATTGATGAGATTCGCAATGGA TTGGAGATCATCCGTGCTGAACATAAGAAATTTGAGGGTTATTATGTGGATGACGAGGAG GAGATTGCATCCTTGTCAATGCGGAGCATTAGAACAGCATCATTGATGGCTGGGGAGTGG GTGCCTGAGACTCAGGAGAATGAGGCAGTTTTTGATGCACTGAGGGAAGCACACCGGTTG CTTGTGTCAAAGCATTTGGTCACAGTACAGGAGTGGATAACTGTGCTTGTGAGGGTCAAC CTTCCAGACAACCGTTTCCGAGATTCTGCATTGAAGGATTTCATTGATGTTAAGAATGAG ATAAGGGCTGTGAGAGATCATTGCAGTGAGCTTGGTCTTGACCTTGATAATTTTCATAGG CGGAAGGGTGACCAGGAGGAAGAGGACAATGAGTTCTGGGTGGAGGGAAACATAGAGGCA CCAAATCGTGCCAGAGTCCAGAGCAGTTTAGATGTTGCGAGCACTAGCAAGGACACTGAG AAGGGAAAGTGGGTGGTTGGTGGAGTGTGTCACATTGGCAAGGCACCAGTTGCAGCTAAT GGAACGAGAAATCTTGATCCAGAAAAATCAAAACTCCTCGCTGAAGCCCCTGTGCTGCCA TGGAGCTCTGTCTTGGATCGCTGGGGCTCAAGTGGGGATGTACACGTAAACCAGAGGGGA CTTGAGGTCGAGAGTCATTGGGGAAGAGTGGATAATGATGCCACTATACCTGCAGCAAAG ATTGCAGAGTTGAATGTTCATTGCTCAATTTATAGAGAAGCCCCAGTTGAGATCCTACCA TGCCACGCCCCTCTAAAAAAAGGAGGACTTTGCCAGAGAAGGGATCTTAGGGTATGTCCT TTCCATGGACCGATTGTCCCACGTGATGCAGAAGGAAATCCAATTGAGCAGAACAGTGGT AGTTCTGATGCAGAAGTAAATCCTGTTGAGCACTTAGACATTGGAGGACATTCAAATGAG CTTAATGGAATCAGTGATGATGATTATATGGAGGGAACCTCTTCAAGAATGACAGGTGTC AATAATGATTATGGTGACATAGCTGGAACTTGTGATCTAGGTAAGATTACTGCAGAGCAG TTAGCAAGACAATCAGTTAAAAATGTCCGGAAAAGAGAAATGGATCGCAAGGCACAGGAA AGGGCCCAACGTGCAAGAATCCGTCAGCACAATGAAGATGTCCTGCGAAATGCGGCTCTT GCTTCAACTTCCTATTCTGCAGCAGCCTATGAGCAGCCTACAGAAGCACATGGTCGGCGA GGACGCCGAGGTAAGGCAAAGGCACCAACGCTGGCATCGATGCTGAAAAAGAAAGTTACC ACCAAAGACAGAATTGCAGAGAGGCTTCTGAACACTCGAGCCACAGATGCCACAGTAAGG GATGTTTCTCATAATGAAGATATGAGCTACAGGGAAGCATTTCCAAATCAGTGGTAG

Peptide Sequence

PEP ID	Zm00001d045490_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:9:24406700:24409358:-1 gene:Zm00001d045490 transcript:Zm00001d045490_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:UV-stimulated scaffold protein A homolog
Sequence	MPRPMASSSARGRAKDSDPSSSSAAADSSMASLIERATSTTAHAVDPVLLRAIKSSARAS DAAIRDAFRLILSLMSKPHSHVRLLAFSIADELFMRSKLFRSLLADSLDGFLPLAVGFRR ANPLPPPTTSAALLRKAAVQALERWHHLFGAHYRQLRLAVEYLKESARVQFSGLRATVDA RAAREARMQEIYAGKVEQLRENLASIKAEIRSTIDEIRNGLEIIRAEHKKFEGYYVDDEE EIASLSMRSIRTASLMAGEWVPETQENEAVFDALREAHRLLVSKHLVTVQEWITVLVRVN LPDNRFRDSALKDFIDVKNEIRAVRDHCSELGLDLDNFHRRKGDQEEEDNEFWVEGNIEA PNRARVQSSLDVASTSKDTEKGKWVVGGVCHIGKAPVAANGTRNLDPEKSKLLAEAPVLP WSSVLDRWGSSGDVHVNQRGLEVESHWGRVDNDATIPAAKIAELNVHCSIYREAPVEILP CHAPLKKGGLCQRRDLRVCPFHGPIVPRDAEGNPIEQNSGSSDAEVNPVEHLDIGGHSNE LNGISDDDYMEGTSSRMTGVNNDYGDIAGTCDLGKITAEQLARQSVKNVRKREMDRKAQE RAQRARIRQHNEDVLRNAALASTSYSAAAYEQPTEAHGRRGRRGKAKAPTLASMLKKKVT TKDRIAERLLNTRATDATVRDVSHNEDMSYREAFPNQW

Transcript Sequence

Transcript ID	Zm00001d045490_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:24406700:24409358:-1 gene:Zm00001d045490 gene_biotype:protein_coding transcript_biotype:protein_coding description:UV-stimulated scaffold protein A homolog
Sequence	GGAGCGACATCAATCCGGTTCGGGCCCCGGGGCCCATGAGGAGTCGCTAGGGGCTTCAAC TTCATCGCTGCCCAGAAGTCGCACGCAGCACGGCCTCCGATCGATTTCCTCTTGTCCGCG TGTCCCAGCGAATCGCCGTCATGCCGCGCCCGATGGCCTCCTCCTCCGCCAGGGGCCGGG CGAAGGATTCCGACCCCTCATCATCCTCGGCAGCGGCGGATTCCTCCATGGCATCCCTAA TCGAGCGCGCCACCTCCACCACGGCGCACGCCGTCGACCCGGTGCTCCTCCGCGCCATCA AATCTTCGGCCCGTGCCTCCGATGCCGCCATCCGGGACGCGTTCCGCCTCATCCTCTCCC TCATGTCCAAGCCCCACTCCCACGTGCGGCTCCTCGCCTTCAGCATCGCCGACGAGCTCT TCATGCGCTCCAAGCTCTTCCGCTCCCTCCTTGCTGACTCGCTCGACGGCTTCCTCCCGC TCGCCGTCGGGTTCCGCCGAGCAAACCCCCTCCCGCCGCCGACCACGTCCGCTGCCTTAC TCCGGAAGGCCGCCGTCCAGGCGCTCGAGCGCTGGCACCATCTCTTTGGTGCGCACTACC GCCAGCTCCGCCTGGCCGTCGAGTACCTCAAGGAGTCCGCGCGCGTCCAGTTCTCTGGTC TGCGGGCCACCGTTGATGCTCGTGCAGCTCGTGAGGCTCGCATGCAGGAGATCTATGCTG GCAAGGTTGAGCAGTTGCGTGAAAACCTTGCGTCAATCAAGGCGGAGATTCGGTCCACGA TTGATGAGATTCGCAATGGATTGGAGATCATCCGTGCTGAACATAAGAAATTTGAGGGTT ATTATGTGGATGACGAGGAGGAGATTGCATCCTTGTCAATGCGGAGCATTAGAACAGCAT CATTGATGGCTGGGGAGTGGGTGCCTGAGACTCAGGAGAATGAGGCAGTTTTTGATGCAC TGAGGGAAGCACACCGGTTGCTTGTGTCAAAGCATTTGGTCACAGTACAGGAGTGGATAA CTGTGCTTGTGAGGGTCAACCTTCCAGACAACCGTTTCCGAGATTCTGCATTGAAGGATT TCATTGATGTTAAGAATGAGATAAGGGCTGTGAGAGATCATTGCAGTGAGCTTGGTCTTG ACCTTGATAATTTTCATAGGCGGAAGGGTGACCAGGAGGAAGAGGACAATGAGTTCTGGG TGGAGGGAAACATAGAGGCACCAAATCGTGCCAGAGTCCAGAGCAGTTTAGATGTTGCGA GCACTAGCAAGGACACTGAGAAGGGAAAGTGGGTGGTTGGTGGAGTGTGTCACATTGGCA AGGCACCAGTTGCAGCTAATGGAACGAGAAATCTTGATCCAGAAAAATCAAAACTCCTCG CTGAAGCCCCTGTGCTGCCATGGAGCTCTGTCTTGGATCGCTGGGGCTCAAGTGGGGATG TACACGTAAACCAGAGGGGACTTGAGGTCGAGAGTCATTGGGGAAGAGTGGATAATGATG CCACTATACCTGCAGCAAAGATTGCAGAGTTGAATGTTCATTGCTCAATTTATAGAGAAG CCCCAGTTGAGATCCTACCATGCCACGCCCCTCTAAAAAAAGGAGGACTTTGCCAGAGAA GGGATCTTAGGGTATGTCCTTTCCATGGACCGATTGTCCCACGTGATGCAGAAGGAAATC CAATTGAGCAGAACAGTGGTAGTTCTGATGCAGAAGTAAATCCTGTTGAGCACTTAGACA TTGGAGGACATTCAAATGAGCTTAATGGAATCAGTGATGATGATTATATGGAGGGAACCT CTTCAAGAATGACAGGTGTCAATAATGATTATGGTGACATAGCTGGAACTTGTGATCTAG GTAAGATTACTGCAGAGCAGTTAGCAAGACAATCAGTTAAAAATGTCCGGAAAAGAGAAA TGGATCGCAAGGCACAGGAAAGGGCCCAACGTGCAAGAATCCGTCAGCACAATGAAGATG TCCTGCGAAATGCGGCTCTTGCTTCAACTTCCTATTCTGCAGCAGCCTATGAGCAGCCTA CAGAAGCACATGGTCGGCGAGGACGCCGAGGTAAGGCAAAGGCACCAACGCTGGCATCGA TGCTGAAAAAGAAAGTTACCACCAAAGACAGAATTGCAGAGAGGCTTCTGAACACTCGAG CCACAGATGCCACAGTAAGGGATGTTTCTCATAATGAAGATATGAGCTACAGGGAAGCAT TTCCAAATCAGTGGTAGCAGAAGCAGTTGAGTTGTTCTTGTGTAGGCTGGATAAACACGT TAGGAATGGAATCGATGTTGTTTATTGGTTCATACTGTCAGCTAAATAATACATATTCTG TTGCTATCTAAATCAGCACAGAACTGTGAGTATGTTTCCTGATATTCTGTTCTTGTACAG TTAGTAGGATAAGTTCCTTGTACATTTCCTAATGTTCAGTCTTACTATGTGTTTTTGAAC TTACACTGCTATTGCTTGCATTTCAAAGTGAACTTGTTTGTAAAACCCGTAAACCGTGCC CTGTTAAGATGTACTCCTTACATACCAAATAATCAAATTGGCAATGGATTGAACAGGAA