Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045261_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:9:17403591:17412594:1 gene:Zm00001d045261 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:starch synthase I description:Starch synthase I

Sequence

ATGGTTGTAATGCCCAGATATTTAAATGGTACCTCCGATAAGAATTATGCAAATGCATTT
TACACAGAAAAACACATTCGGATTCCATGCTTTGGCGGTGAACATGAAGTTACCTTCTTC
CATGAGTATAGAGATTCAGTTGACTGGGTGTTTGTTGATCATCCCTCATATCACAGACCT
GGAAATTTATATGGAGATAAGTTTGGTGCTTTTGGTGATAATCAGTTCAGATACACACTC
CTTTGCTATGCTGCATGTGAGGCTCCTTTGGTCCTTGAATTGGGAGGATATATTTATGGA
CAGAATTGCATGTTTGTTGTCAATGATTGGCATGCCAGTCTAGTGCCAGTCCTTCTTGCT
GCAAAATATAGACCATATGGTGTTTATAAAGACTCCCGCAGCATTCTTGTAATACATAAT
TTAGCACATCAGGGTGTAGAGCCTGCAAGCACATATCCTGACCTTGGGTTGCCACCTGAA
TGGTATGGAGCTCTGGAGTGGGTATTCCCTGAATGGGCGAGGAGGCATGCCCTTGACAAG
GGTGAGGCAGTTAATTTTTTGAAAGGTGCAGTTGTGACAGCAGATCGAATCGTGACTGTC
AGTAAGGGTTATTCATGGGAGGTCACAACTGCTGAAGGTGGACAGGGCCTCAATGAGCTC
TTAAGCTCCAGAAAGAGTGTATTAAACGGAATTGTAAATGGAATTGACATTAATGATTGG
AACCCTGCCACAGACAAATGTATCCCCTGTCATTATTCTGTTGATGACCTCTCTGGAAAG
GCCAAATGTAAAGGTGCATTGCAGAAGGAGCTGGGTTTACCTATAAGGCCTGATGTTCCT
CTGATTGGCTTTATTGGAAGATTGGATTATCAGAAAGGCATTGATCTCATTCAACTTATC
ATACCAGATCTCATGCGGGAAGATGTTCAATTTGTCATGCTTGGATCTGGTGACCCAGAG
CTTGAAGATTGGATGAGATCTACAGAGTCGATCTTCAAGGATAAATTTCGTGGATGGGTT
GGATTTAGTGTTCCAGTTTCCCACCGAATAACTGCCGGCTGCGATATATTGTTAATGCCA
TCCAGATTCGAACCTTGTGGTCTCAATCAGCTATATGCTATGCAGTATGGCACAGTTCCT
GTTGTCCATGCAACTGGGGGCCTTAGAGATACCGTGGAGAACTTCAACCCTTTCGGTGAG
AATGGAGAGCAGGGTACAGGGTGGGCATTCGCACCCCTAACCACAGAAAACATGTTGTGG
ACATTGCGAACTGCAATATCTACATACAGGGAACACAAGTCCTCCTGGGAAGGGCTAATG
AAGCGAGGCATGTCAAAAGACTTCACGTGGGACCATGCCGCTGAACAATACGAACAAATC
TTCCAGTGGGCCTTCATCGATCGACCCTATGTCATGTAA

Peptide Sequence

PEP ID

Zm00001d045261_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:9:17403591:17412594:1 gene:Zm00001d045261 transcript:Zm00001d045261_T011 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:starch synthase I description:Starch synthase I

Sequence

MVVMPRYLNGTSDKNYANAFYTEKHIRIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRP
GNLYGDKFGAFGDNQFRYTLLCYAACEAPLVLELGGYIYGQNCMFVVNDWHASLVPVLLA
AKYRPYGVYKDSRSILVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDK
GEAVNFLKGAVVTADRIVTVSKGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDW
NPATDKCIPCHYSVDDLSGKAKCKGALQKELGLPIRPDVPLIGFIGRLDYQKGIDLIQLI
IPDLMREDVQFVMLGSGDPELEDWMRSTESIFKDKFRGWVGFSVPVSHRITAGCDILLMP
SRFEPCGLNQLYAMQYGTVPVVHATGGLRDTVENFNPFGENGEQGTGWAFAPLTTENMLW
TLRTAISTYREHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQWAFIDRPYVM

Transcript Sequence

Transcript ID

Zm00001d045261_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:17403591:17412594:1 gene:Zm00001d045261 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:starch synthase I description:Starch synthase I

Sequence

AGGGATTGCTGAAGGTTCCATCGATAACACAGTAGTTGTGGCAAGTGAGCAAGATTCTGA
GATTGTGGTTGGAAAGGAGCAAGCTCGAGCTAAAGTAACACAAAACATTGTCTTTGTAAC
TGGCGAAGCTTCTCCTTATGCAAAGTCTGGGGGTCTAGGAGATGTTTGTGGTTCATTGCC
AGTTGCTCTTGCTGCTCGTGGTCACCGTGTGATGGTTGTAATGCCCAGATATTTAAATGG
TACCTCCGATAAGAATTATGCAAATGCATTTTACACAGAAAAACACATTCGGATTCCATG
CTTTGGCGGTGAACATGAAGTTACCTTCTTCCATGAGTATAGAGATTCAGTTGACTGGGT
GTTTGTTGATCATCCCTCATATCACAGACCTGGAAATTTATATGGAGATAAGTTTGGTGC
TTTTGGTGATAATCAGTTCAGATACACACTCCTTTGCTATGCTGCATGTGAGGCTCCTTT
GGTCCTTGAATTGGGAGGATATATTTATGGACAGAATTGCATGTTTGTTGTCAATGATTG
GCATGCCAGTCTAGTGCCAGTCCTTCTTGCTGCAAAATATAGACCATATGGTGTTTATAA
AGACTCCCGCAGCATTCTTGTAATACATAATTTAGCACATCAGGGTGTAGAGCCTGCAAG
CACATATCCTGACCTTGGGTTGCCACCTGAATGGTATGGAGCTCTGGAGTGGGTATTCCC
TGAATGGGCGAGGAGGCATGCCCTTGACAAGGGTGAGGCAGTTAATTTTTTGAAAGGTGC
AGTTGTGACAGCAGATCGAATCGTGACTGTCAGTAAGGGTTATTCATGGGAGGTCACAAC
TGCTGAAGGTGGACAGGGCCTCAATGAGCTCTTAAGCTCCAGAAAGAGTGTATTAAACGG
AATTGTAAATGGAATTGACATTAATGATTGGAACCCTGCCACAGACAAATGTATCCCCTG
TCATTATTCTGTTGATGACCTCTCTGGAAAGGCCAAATGTAAAGGTGCATTGCAGAAGGA
GCTGGGTTTACCTATAAGGCCTGATGTTCCTCTGATTGGCTTTATTGGAAGATTGGATTA
TCAGAAAGGCATTGATCTCATTCAACTTATCATACCAGATCTCATGCGGGAAGATGTTCA
ATTTGTCATGCTTGGATCTGGTGACCCAGAGCTTGAAGATTGGATGAGATCTACAGAGTC
GATCTTCAAGGATAAATTTCGTGGATGGGTTGGATTTAGTGTTCCAGTTTCCCACCGAAT
AACTGCCGGCTGCGATATATTGTTAATGCCATCCAGATTCGAACCTTGTGGTCTCAATCA
GCTATATGCTATGCAGTATGGCACAGTTCCTGTTGTCCATGCAACTGGGGGCCTTAGAGA
TACCGTGGAGAACTTCAACCCTTTCGGTGAGAATGGAGAGCAGGGTACAGGGTGGGCATT
CGCACCCCTAACCACAGAAAACATGTTGTGGACATTGCGAACTGCAATATCTACATACAG
GGAACACAAGTCCTCCTGGGAAGGGCTAATGAAGCGAGGCATGTCAAAAGACTTCACGTG
GGACCATGCCGCTGAACAATACGAACAAATCTTCCAGTGGGCCTTCATCGATCGACCCTA
TGTCATGTAAAAAAGGACCAAAGTGGTGGTTCCTTGAAGATCATCAGTTCATCATCCTAT
AGTAAGCTGAATGATGAAAGAAAACCCCTGTACATTACATGGAAGGCAGACCGGCTATTG
GCTCCATTGCTCCAATGTCTGCTTTGGCTGCCTTGCCTCGATGGACCGGATGCAGTGAGG
AATCCAGCCGAACGACAGTTTTGAAGGATAGGAAGGGGAGCTGGAAGCAGTCACGCAGGC
AGCCTCGCCGTGATTCATATGGAACAAGCTGGAGTCAGTTTCTGCTGTGCCACTCACTGT
TTACCTTAAGATTATTACCTGTGTTGTTGTCCTTTGCTCGTTAGGGCTGATAACATAATG
ACTCATTAGAAAATCATGCCTCGTTTTTATTAACTGAAGTGGACACTTCGCATTCTTGCC
CGTTTACCAGAGATGGCCACTGCTGATGGTGCATTTTG