Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045218_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:9:16468794:16473687:1 gene:Zm00001d045218 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein disulfide isomerase5 description: protein disulfide isomerase5
Sequence

ATGAGGGCGCGGTGGGCTGTGACGCTTCTGCTGCTCGCGGTCCTAGCGCTCACCGCGTCG
GCGGCGCGGCTGGACCTGGACGACGACGACGACTCGGGCGTGCTGGACGAGCTCCTGGCC
ATCGACGAGGAGGCCGAACGGGGCGGGCTGCTGGACGCGGAGGGCGCCGGGGAGGCGGTG
CGGCGGGCGCAGTCGATGGTGCTGGCGCTCGACAATGACAACGCGCGCCGCGCCGTGGAG
GACCACGCGGAGCTGCTGCTGCTCGGGTACGCGCCGTGGTGTGAGCGCAGCGCGCAGCTC
ATGCCGCGGTTCGCCGAGGCCGCCGCCGCGCTGCGCGCCATGGGCAGCGCCGTCGCCTTC
GCGAAGCTCGACGGGGAGCGCTACCCCAAGGCGGCTGCCGCCGTCGGGGTCAAGGGCTTC
CCCACCGTGCTCCTCTTCGTCAATGGCACCGAGCACGCCTACCATGGCCTCCACACCAAG
GACGCCATAGTTACTTGGGTAAGAAAGAAGACTGGCGTGCCAATCATTAGGCTTCAGTCT
AAGGATTCAGCTGAGGAGTTCCTCAAAAAGGACATGACCTTTGTTATTGGTCTATTCAAG
AATTTTGAGGGAGCAGACCATGAAGAATTTGTGAAGGCAGCAACCACAGACAACGAGGTA
CAGTTTGTAGAAACCAGTGATACAAGTGTTGCCAAAGTTCTATTTCCAGGTATTACGTCC
GAGGAGAAATTTGTGGGCCTCGTTAAAAGCGAGCCAGAGAAGTTTGAAAAGTTCGATGGG
AAATTTGAAGAAAAGGAAATTTTGCGGTTTGTGGAGCTCAACAAGTTTCCTCTAATTACT
GTATTCACTGAGCTCAATTCTGGTAAAGTATATTCAAGCCCTATTGAGCTACAGGTCTTC
ACCTTTGCAGAGGCTTATGATTTTGAAGATCTGGAATCTATGGTTGAAGAAATAGCCAGA
GCATTCAAGACAAAGATAATGTTTATATATGTTGACACTGCTGAAGAAAACCTTGCAAAA
CCATTCCTCACTCTTTATGGCCTTGAATCAGAAAAAAAGCCTACTGTTACAGCATTTGAT
ACAAGCAATGGAGCCAAGTATCTGATGGAGGCAGATATCAATGCAAACAACCTGAGGGAG
TTCTGCTTAAGTCTTCTGGATGGCACGCTCCCGCCATACCACAAATCAGAACCATTGCCT
CAAGAGAAGGGACTTATTGAAAAGGTTGTTGGTCGTACATTTGATTCTTCTGTGCTGGAA
AGTCATCAAAACGTCTTCCTTGAGGTTCATACACCTTGGTGTGTTGACTGTGAAGCGATA
AGTAAAAATGTTGAGAAGCTGGCGAAGCATTTTAGTGGTTCGGACAATCTTAAATTTGCG
CGCATAGATGCTTCTGTGAATGAACATCCCAAATTGAAGGTGAATAATTACCCGACGCTA
TTCCTTTATCTTGCTGAAGACAAAAGCAACCCGATCAAGCTTTCAAAGAAATCGAGTGTC
AAGGACATGGCCAAACTGATCAAGGAGAAGCTGCAAATACCAGACGTGGAGACAGTAGCG
GCCCCTGACAACGTCAAGGATGAGCTATAA

Peptide Sequence

PEP ID

Zm00001d045218_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:9:16468794:16473687:1 gene:Zm00001d045218 transcript:Zm00001d045218_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein disulfide isomerase5 description: protein disulfide isomerase5
Sequence

MRARWAVTLLLLAVLALTASAARLDLDDDDDSGVLDELLAIDEEAERGGLLDAEGAGEAV
RRAQSMVLALDNDNARRAVEDHAELLLLGYAPWCERSAQLMPRFAEAAAALRAMGSAVAF
AKLDGERYPKAAAAVGVKGFPTVLLFVNGTEHAYHGLHTKDAIVTWVRKKTGVPIIRLQS
KDSAEEFLKKDMTFVIGLFKNFEGADHEEFVKAATTDNEVQFVETSDTSVAKVLFPGITS
EEKFVGLVKSEPEKFEKFDGKFEEKEILRFVELNKFPLITVFTELNSGKVYSSPIELQVF
TFAEAYDFEDLESMVEEIARAFKTKIMFIYVDTAEENLAKPFLTLYGLESEKKPTVTAFD
TSNGAKYLMEADINANNLREFCLSLLDGTLPPYHKSEPLPQEKGLIEKVVGRTFDSSVLE
SHQNVFLEVHTPWCVDCEAISKNVEKLAKHFSGSDNLKFARIDASVNEHPKLKVNNYPTL
FLYLAEDKSNPIKLSKKSSVKDMAKLIKEKLQIPDVETVAAPDNVKDEL

Transcript Sequence

Transcript ID

Zm00001d045218_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:16468794:16473687:1 gene:Zm00001d045218 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein disulfide isomerase5 description: protein disulfide isomerase5
Sequence

GTGCTACTGCAGCCTGCTCCGGTAGTCGCGGCGCACGCCTCCCGTCCGCCTTGCCGTTTG
AACACTCGAGCTCGAGAGCAATTTACGGCACCATCGCATCGCGCACTCGTGCCACCCCAC
CCCCCGATTCCTTCGATCCCCTCGTGGCGGTGGCGCGTCGTGCGGGCTCTACTGGAGCTA
GATCTCGGAGGAGTGGAAGGGAGACAGCCAGGGAGGGAAGGGAGACCGCGGCGCCGCGCA
TTTCGTCGAGCACGATGAGGGCGCGGTGGGCTGTGACGCTTCTGCTGCTCGCGGTCCTAG
CGCTCACCGCGTCGGCGGCGCGGCTGGACCTGGACGACGACGACGACTCGGGCGTGCTGG
ACGAGCTCCTGGCCATCGACGAGGAGGCCGAACGGGGCGGGCTGCTGGACGCGGAGGGCG
CCGGGGAGGCGGTGCGGCGGGCGCAGTCGATGGTGCTGGCGCTCGACAATGACAACGCGC
GCCGCGCCGTGGAGGACCACGCGGAGCTGCTGCTGCTCGGGTACGCGCCGTGGTGTGAGC
GCAGCGCGCAGCTCATGCCGCGGTTCGCCGAGGCCGCCGCCGCGCTGCGCGCCATGGGCA
GCGCCGTCGCCTTCGCGAAGCTCGACGGGGAGCGCTACCCCAAGGCGGCTGCCGCCGTCG
GGGTCAAGGGCTTCCCCACCGTGCTCCTCTTCGTCAATGGCACCGAGCACGCCTACCATG
GCCTCCACACCAAGGACGCCATAGTTACTTGGGTAAGAAAGAAGACTGGCGTGCCAATCA
TTAGGCTTCAGTCTAAGGATTCAGCTGAGGAGTTCCTCAAAAAGGACATGACCTTTGTTA
TTGGTCTATTCAAGAATTTTGAGGGAGCAGACCATGAAGAATTTGTGAAGGCAGCAACCA
CAGACAACGAGGTACAGTTTGTAGAAACCAGTGATACAAGTGTTGCCAAAGTTCTATTTC
CAGGTATTACGTCCGAGGAGAAATTTGTGGGCCTCGTTAAAAGCGAGCCAGAGAAGTTTG
AAAAGTTCGATGGGAAATTTGAAGAAAAGGAAATTTTGCGGTTTGTGGAGCTCAACAAGT
TTCCTCTAATTACTGTATTCACTGAGCTCAATTCTGGTAAAGTATATTCAAGCCCTATTG
AGCTACAGGTCTTCACCTTTGCAGAGGCTTATGATTTTGAAGATCTGGAATCTATGGTTG
AAGAAATAGCCAGAGCATTCAAGACAAAGATAATGTTTATATATGTTGACACTGCTGAAG
AAAACCTTGCAAAACCATTCCTCACTCTTTATGGCCTTGAATCAGAAAAAAAGCCTACTG
TTACAGCATTTGATACAAGCAATGGAGCCAAGTATCTGATGGAGGCAGATATCAATGCAA
ACAACCTGAGGGAGTTCTGCTTAAGTCTTCTGGATGGCACGCTCCCGCCATACCACAAAT
CAGAACCATTGCCTCAAGAGAAGGGACTTATTGAAAAGGTTGTTGGTCGTACATTTGATT
CTTCTGTGCTGGAAAGTCATCAAAACGTCTTCCTTGAGGTTCATACACCTTGGTGTGTTG
ACTGTGAAGCGATAAGTAAAAATGTTGAGAAGCTGGCGAAGCATTTTAGTGGTTCGGACA
ATCTTAAATTTGCGCGCATAGATGCTTCTGTGAATGAACATCCCAAATTGAAGGTGAATA
ATTACCCGACGCTATTCCTTTATCTTGCTGAAGACAAAAGCAACCCGATCAAGCTTTCAA
AGAAATCGAGTGTCAAGGACATGGCCAAACTGATCAAGGAGAAGCTGCAAATACCAGACG
TGGAGACAGTAGCGGCCCCTGACAACGTCAAGGATGAGCTATAACCTGTAGTAGACAAAC
TAAGGTCCAGTGAAGGAAAAATTGCAGCATGTTTGCGTGTTTTGCGCCAACCTGATCACA
GAGCTCAGCTTTATTCGCGTGCCGTGTTAAGTTGACTAAAGACAATGGTATATAATATAG
GTACCTAAATCAAAGAGGCTTCGGACCCTAGCATTGGTATCGATTGAGTTATTGACAAGT
ATTCTGCTGTAAAATTCGGAGCATTGGACATGTATGTGTGAGACTATAGCATGCTTTGGG
GTCAGTAGACTCGTCACTAATAACTATACTCAATTCATCAGTGATGTGTTCGGGGAATAC
CGTGTCAATATAGGCACCAAGCTATGCTTTGTCTCACCACATCACACCCGAAGCAACAAG
CAAGTGAAGAGGGCGAATGTGGAAATTCTCCTGAGCCAAGA