Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045146_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:9:14229745:14234623:-1 gene:Zm00001d045146 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline O-galactosyltransferase HPGT3
Sequence

ATGGAGACGCTGGCCAGCGCCATGCGGCGCGAGAACCGCCGGTCCAAGGCCCCGCCCTCC
TCCTCTGCTTCCTCCGCCCTCGCCTCGGGCAGGGTCCCTCTCGTCATGGCCTTCCTCTCC
TGCCTCGCCTGGCTCTACGTCGCCGGCCGTTTGTGGCAGGACGCGCAGACCCGGGCGATC
CTGTCCGGCCTCCTCGAGAAGAGCTCTACCAGCGTCCCGAAGGTGCTCTCGGTGGAGGAC
AAGCTTAGGAACCTTGGGTGCAAGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGAC
CTGACCAAGGCCAAGAGCGAGGGGTACCTGTGGGGGAACAGGACTGCAGCTGTGGACTCC
GACAAGAAGCAGCAGCTTCTTGCCGTCATTGGAGTTTACACTGGGTTTGGCTCCCGTCTC
AAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGGTGATGCTCTGAAGAAGCTTGAG
GAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGGTTTTGTTCTGGATCTATACCT
TTTTTTATTGATTATGTATACCTTTTTGGACCTGCAGTGCAAATCGAGGTGATAGCTTGG
ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGA

Peptide Sequence

PEP ID

Zm00001d045146_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:9:14229745:14234623:-1 gene:Zm00001d045146 transcript:Zm00001d045146_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline O-galactosyltransferase HPGT3
Sequence

METLASAMRRENRRSKAPPSSSASSALASGRVPLVMAFLSCLAWLYVAGRLWQDAQTRAI
LSGLLEKSSTSVPKVLSVEDKLRNLGCKAIGRKIVEAEMDLTKAKSEGYLWGNRTAAVDS
DKKQQLLAVIGVYTGFGSRLKRNVFRGSWMPRGDALKKLEEKGVAIRFVIGRRFCSGSIP
FFIDYVYLFGPAVQIEVIAWTVILMMKIGRQRTS

Transcript Sequence

Transcript ID

Zm00001d045146_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:14229745:14234623:-1 gene:Zm00001d045146 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline O-galactosyltransferase HPGT3
Sequence

AAGCAGGAGCAGACAGGAGGCGCCGAGAGCCCAGCGTCGGAGATCTCCGCCGCCATGGAG
ACGCTGGCCAGCGCCATGCGGCGCGAGAACCGCCGGTCCAAGGCCCCGCCCTCCTCCTCT
GCTTCCTCCGCCCTCGCCTCGGGCAGGGTCCCTCTCGTCATGGCCTTCCTCTCCTGCCTC
GCCTGGCTCTACGTCGCCGGCCGTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCC
GGCCTCCTCGAGAAGAGCTCTACCAGCGTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTT
AGGAACCTTGGGTGCAAGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACC
AAGGCCAAGAGCGAGGGGTACCTGTGGGGGAACAGGACTGCAGCTGTGGACTCCGACAAG
AAGCAGCAGCTTCTTGCCGTCATTGGAGTTTACACTGGGTTTGGCTCCCGTCTCAAGAGG
AACGTCTTCCGTGGCTCCTGGATGCCAAGAGGTGATGCTCTGAAGAAGCTTGAGGAAAAG
GGTGTAGCTATTCGTTTTGTTATTGGTCGGAGGTTTTGTTCTGGATCTATACCTTTTTTT
ATTGATTATGTATACCTTTTTGGACCTGCAGTGCAAATCGAGGTGATAGCTTGGACCGTA
ATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTGAAAGTCATGAAGAGG
CTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTCTTCAGTGCTGCAGTTGAAGCCTGGG
ATGCAGAATTTTATGTCAAAGTTGAAGATAACATTAATCTTGACTTAGCTGGGTTAATTG
AGATGCTCGAAGGCCGTCGAGGTAGCCAAGGATTGTACATGGGTTGTATGAAATCAGGGA
TGGTCATAAGTGAAGAGTATGTGCTCTTTTTACTTAATCGTTAGCTTTTCAATTTATTGA
TAGCCTAACGTGTATGCAATTAAACCAGCACTAAGGATTGGATCACATCATAACTGAAGT
TAAACATGCTTGAGCGAGAGTAGTATCATGTTGCATTTTAAGTGTAGGCCTGGTGCAGCA
GTGAGAGCTGTCTCACCGAGTCACCAGGTTGTGGGTTCAAAGCAACCTTCCCATATTTGT
TGGGGGAAGATTTGCCTTGCTTTATCCCTTCCCTAGACCCCATTCATGTTGGAGCTTCCA
ACACTAGGTCTGACGGTCTGACCTAGCGTATATGATATCTCTATGACTCCAACTCCAAGC
CATTTCATTCTTAAGTAGAAGCATGTTTTTTTGTTGATTTTGTAGAGATGGTTAATCTTT
CCAAAGTTGTGCCATGTAGTGGAATGCACTGAGCAAATGTTTTAACAACCTTTTACAGTC
AGTTCTTTTGACAGTTCAATCTAGTTAGCAAATAGTTCTGATGAACAGCTAATGTGTTAT
GTGATACCACTGTATGAACTTGAGAAAACACGTGCTTTTTATTGCATTTTTTTGTCTATG
CAGAATTTTATTTTGGATTTCTATGCCTCTTGTTAGTCAACTATCAAAGTGATTTTGACT
TCAATATCAATTTCAGGGGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATT
CAAAAACGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGCTC
GCTACATCAACATAAATAGGTAAGTGACATGTGCAACAGTCTCTGAGCCTTTGAATCTGC
AGAACATCTTATGCTGGTGCAGGAGTTGGATCACTTCAGACTAAATATGACATTTGGGCT
GAATCTTTTTGTGGTGGATGAAACAACTAATCTTTTGATTTCTTATTATATCTAAATTCC
TTTTGTATGTTGCCATGGTAGTTATCCAAATAATTATTACTGAATACCTGTTGGGTATGA
ATTATCAGTGAGTGCATTGATTAGAATGCTGTTTTAATTTACTTCCTAAAGAACACATAT
CATGTCATATTGTGTCAAGGGTAAATAGGATAAATATTATCTTCAAGATGCAAGGGCTCG
TTTAATCATTCCCATGTCAAAATGTGAAAGGGTCTCTAGCGTAATGGTTAAGGCATTCGG
GTAGCATCTCCATGTCCCGAGTTCGATCCTTCTTGGGGGCGAATTTCGGGCTTGGTTAAA
AAAATCCTCTCGTTGTGTCCCGCCCGCTCTCGGGGATCGATATCCTGCGCGCCACCCTCC
GGTTGGGCCGTTGCAGAGTGAGCAGTTGATCGGCCCGTTAGTGATGGGGAGCCAGGGTTC
GGGGGTTTTCTCGGCCGGAACCATGTTTCGGTCTTTTCTTAATATAATACCAGGAGGGCG
GTCTTTCCCTCCCGGCCGAGTTTTTTTATGTTTCTATTCAGAGATATATGTGCTACCATT
TTTTGCCTGGACAGAAGCTCTTGCGTTTTCTGGTGCTTTATTTCTGCCCACCAGGTCTTC
ATCTCAGTTTTGTCCTCTATCACACAGTGCGTCACTGCAGAGTTATGCACACGATGATAT
ATCAGTAGGTTCATGGATGATGGGACTGAATGCAACTTACGTGGATGATGACCGGTTGTG
CTGCAGCAGTTCCAGACAAGAGAAAATCTGTTCCAATGCTTGAGCGGAAGGCGTGGCTGC
TGGCCTGTTGCTGTACATCCTGATGAAGATTTTGCACACCTGTCATTTTGTATACACTGC
TTTCGTGAACCGGAAAAGGCTACTATCCAGATAGAAACGGCTTGCACCAAAATTTAGGAA
CTTCC