Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045084_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:9:12042531:12047492:1 gene:Zm00001d045084 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGTGCAGCTGCCGAGCTCGGGGAAGCGGCACGCGGAGCCGGCCATGGCTCCGGCGCGG
CGCGCGGCGACGGTCAAGCTAGAGGTGGAGGAGCTCGGGGCCGACGAGCGCTGCCCGCTC
AGCAAGCGCGCCAAGGCAGCTCTGCCGATGCCCCCGACGCCTCCGCAGCCGCAGCAGGAT
ATGTACCACAATGTACTCGATGAACCTAGCCCATTGGGTCTGCGGCTGAAAAAAAGTCCA
TCACTCTTGGATTTGATTCAGATGAGACTTTCTCAAGCATCCAATGCTGGCGAGTCATCC
ATGGACAACAGCGGTTCTGAGCCTTCCAAGAAGAAAGACAATAAATCTGGTGCTTCTGCA
GCAGGCGAACGACTAAAAGCTTCGAATTTTCCTGCAAGTATATTGAAGATTGGTTCATGG
GAGTATGTGTCACGGTACGAAGGTGATTTGGTGGCAAAGTGTTACTTTGCAAAGCATAAA
CTTGTGTGGGAAGTTCTGGAAGGTGGCCTTAAGAGTAAGATAGAGATTCAATGGTCAGAT
ATTACTGCTTTGAAGGCAACTTGCCCCGAAAATGGCCAAGGAACCTTGGACGTGGCGTTG
GCCAGACCACCTCTTTTCTTTAAAGAGACAGATCCGCAGCCAAGAAAACACACACTGTGG
CAGGCTACCTCAGATTTCACTGGTGGTCAAGCGAGTGTGCACAGGCGGCATTTTCTGCAG
TGCCCTTCAACCTTGTTGAGCAAGAATTTTGAGAAGCTTATTCAGTGTGATCAGCGGCTA
TATCAATTGAGTCAACAACCGGAAATCACATTAGACTCTGCGTTGTTTGAACCTAGGAGC
TCAATATTTGAGGATCCGGTTGAATCAAAATGTGCTGGGTTTACTAATTTGAAAGATGAA
CATGAGGCTCTACCTGGCTATTCAGGCCCGGTGTCACCATGTGCTGGTTCCTCCATATCT
GCTAAGAATGAAAACAATGATTCCATTGGAATGACAGCTGAATATCTTTCTCAGACAGTA
GGAACAGGCATTTTTACAGGAGTTGGTGCTGTAGGTGTACAAGCTGTTGGCAGAAATGTG
AATGGTGCAGCACCAGAATTCACTATTCCCCACTGGTGGAGTCAATTGAAGGTGCCTGGG
CTTAGACCATCGATGTCTGTGGATGATTTTGTGAACCACCTAGGCAACTGCATCTCAGAG
CAGATCACTTCAGGCAATCCGGCGTTGGCCAACAACGAGGTGCCGACCAAAGAAACACTT
GAGGGGATTGCTCAGTACCTTCTTGGTGACACACAAGGCCCACCGGTTTCTGCTTCAGAC
GAGAGATCACTGATGGCCAGGGTGGACTCCCTCTGCTGTTTGATTCAGAAAGACACAGTG
CCGGTTACCAAACCAAAACCTGAGCCAAATGACAGCGACAGCATCGGTGTTGAAGCCTCG
GATGGTTCCGACGAAGAATTCAGCTCTGCACCAACTGGGAAACCTACAGATGCCACCAAT
CTACCAGCCATGTCAAGAAAGGATTCGTTTGGGGAGCTGCTGACTAACCTCCCCCGCATT
GCCTCGCTACCACAGTTCCTCTTCAAGATACCAGAGGGTACAGAGAACTGA

Peptide Sequence

PEP ID

Zm00001d045084_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:9:12042531:12047492:1 gene:Zm00001d045084 transcript:Zm00001d045084_T005 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MVQLPSSGKRHAEPAMAPARRAATVKLEVEELGADERCPLSKRAKAALPMPPTPPQPQQD
MYHNVLDEPSPLGLRLKKSPSLLDLIQMRLSQASNAGESSMDNSGSEPSKKKDNKSGASA
AGERLKASNFPASILKIGSWEYVSRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWSD
ITALKATCPENGQGTLDVALARPPLFFKETDPQPRKHTLWQATSDFTGGQASVHRRHFLQ
CPSTLLSKNFEKLIQCDQRLYQLSQQPEITLDSALFEPRSSIFEDPVESKCAGFTNLKDE
HEALPGYSGPVSPCAGSSISAKNENNDSIGMTAEYLSQTVGTGIFTGVGAVGVQAVGRNV
NGAAPEFTIPHWWSQLKVPGLRPSMSVDDFVNHLGNCISEQITSGNPALANNEVPTKETL
EGIAQYLLGDTQGPPVSASDERSLMARVDSLCCLIQKDTVPVTKPKPEPNDSDSIGVEAS
DGSDEEFSSAPTGKPTDATNLPAMSRKDSFGELLTNLPRIASLPQFLFKIPEGTEN

Transcript Sequence

Transcript ID

Zm00001d045084_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:12042531:12047492:1 gene:Zm00001d045084 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGGCCTAGGGAATCCGACCCCACATGTCATACAACAGCGCCGCCTCTTGTGAGCGCG
GCGGCGGCTATTTCCAGACCCCTCTCATCCCCGAAAGGCCAAGCCGGCTCCCGTCCCATC
GCTCGCTTCCCCCTCCCGCGAATCATTCGATTCGGCCCGCCTCGTCTCGCCCGCCCGATT
CGATTTGGCCGTCAGGGTGATCGGAGCCGGCGCTAGGGTTAGGGTTCCGGCGATCCCCAT
ACCTATGGTGCAGCTGCCGAGCTCGGGGAAGCGGCACGCGGAGCCGGCCATGGCTCCGGC
GCGGCGCGCGGCGACGGTCAAGCTAGAGGTGGAGGAGCTCGGGGCCGACGAGCGCTGCCC
GCTCAGCAAGCGCGCCAAGGCAGCTCTGCCGATGCCCCCGACGCCTCCGCAGCCGCAGCA
GGATATGTACCACAATGTACTCGATGAACCTAGCCCATTGGGTCTGCGGCTGAAAAAAAG
TCCATCACTCTTGGATTTGATTCAGATGAGACTTTCTCAAGCATCCAATGCTGGCGAGTC
ATCCATGGACAACAGCGGTTCTGAGCCTTCCAAGAAGAAAGACAATAAATCTGGTGCTTC
TGCAGCAGGCGAACGACTAAAAGCTTCGAATTTTCCTGCAAGTATATTGAAGATTGGTTC
ATGGGAGTATGTGTCACGGTACGAAGGTGATTTGGTGGCAAAGTGTTACTTTGCAAAGCA
TAAACTTGTGTGGGAAGTTCTGGAAGGTGGCCTTAAGAGTAAGATAGAGATTCAATGGTC
AGATATTACTGCTTTGAAGGCAACTTGCCCCGAAAATGGCCAAGGAACCTTGGACGTGGC
GTTGGCCAGACCACCTCTTTTCTTTAAAGAGACAGATCCGCAGCCAAGAAAACACACACT
GTGGCAGGCTACCTCAGATTTCACTGGTGGTCAAGCGAGTGTGCACAGGCGGCATTTTCT
GCAGTGCCCTTCAACCTTGTTGAGCAAGAATTTTGAGAAGCTTATTCAGTGTGATCAGCG
GCTATATCAATTGAGTCAACAACCGGAAATCACATTAGACTCTGCGTTGTTTGAACCTAG
GAGCTCAATATTTGAGGATCCGGTTGAATCAAAATGTGCTGGGTTTACTAATTTGAAAGA
TGAACATGAGGCTCTACCTGGCTATTCAGGCCCGGTGTCACCATGTGCTGGTTCCTCCAT
ATCTGCTAAGAATGAAAACAATGATTCCATTGGAATGACAGCTGAATATCTTTCTCAGAC
AGTAGGAACAGGCATTTTTACAGGAGTTGGTGCTGTAGGTGTACAAGCTGTTGGCAGAAA
TGTGAATGGTGCAGCACCAGAATTCACTATTCCCCACTGGTGGAGTCAATTGAAGGTGCC
TGGGCTTAGACCATCGATGTCTGTGGATGATTTTGTGAACCACCTAGGCAACTGCATCTC
AGAGCAGATCACTTCAGGCAATCCGGCGTTGGCCAACAACGAGGTGCCGACCAAAGAAAC
ACTTGAGGGGATTGCTCAGTACCTTCTTGGTGACACACAAGGCCCACCGGTTTCTGCTTC
AGACGAGAGATCACTGATGGCCAGGGTGGACTCCCTCTGCTGTTTGATTCAGAAAGACAC
AGTGCCGGTTACCAAACCAAAACCTGAGCCAAATGACAGCGACAGCATCGGTGTTGAAGC
CTCGGATGGTTCCGACGAAGAATTCAGCTCTGCACCAACTGGGAAACCTACAGATGCCAC
CAATCTACCAGCCATGTCAAGAAAGGATTCGTTTGGGGAGCTGCTGACTAACCTCCCCCG
CATTGCCTCGCTACCACAGTTCCTCTTCAAGATACCAGAGGGTACAGAGAACTGAAGCTG
GAAGTCAAGACCTCGCGCCCTTATGCTGTAAAGATTGTACCCAAGCAATAAGAAATCCGG
TAGGTTGTATTCTGGTGCACCAGTTCCCCGCCCTGTAAATGTGACACTCGGTAGGTTGCC
CCAGCTGTGTGTTTCGCGACTGAAATGGGTAGTGGAAAAATTGAGATGTTCGTTGGTTCT
TTTAAC