Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044979_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:9:9108335:9115092:1 gene:Zm00001d044979 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative DUF1296 domain containing family protein

Sequence

ATGTTCAGTACTCTTGTTCAGTCTGGTCGAAACCGCTCACCTGCTACAACCTCAGGTGAC
CAGATCACACATCAAAATGCTATGCAGAACTCCAACTCTGACACAACCCAAGGGAAGAGG
GATGCTCAAGGTACTACAGAGAAGCATGTGAAGCCATATTTGAAGAACCCTCAGAATGAG
CAGCACTTTCCAGGTTCTGACCCAGCTCATGGGTCAGCCAATGTTAGAATTGCCGGTGGA
ACTGTTGGACCTGCTCAACGTCATGTTGGAGTTGTTAATTCTACTAGGCAATTTGCTGCC
CGTTCGGGTTCTCAGATGCATGCACCAAGTGGTTCTTATGCAAATATTCAGAGGGGGAGT
TTTACCTCAGTAGGGGCATCTGGGCGTTACTCAGCTTTCATGTCTAGAAACATTCAACAA
AACCAGAGACCTGATACAATGTTTCGTGGAAGGCCCACTGTTAGATCTTTTGTTGCACAA
AACACCAACAGATATCACCAGGGTTCTACTAGCAACCAAAAAGCAGTACACCCTATTAAG
GAGTGGAAGCCAAAATCGACAAAGAAGTCACCGACCATTGATGCAGATAACAGTATAGCT
GATGCTACATCTCCTTCAGCTAGCAACTGTGAAAGTGCCAACACACTGAATGTAAACGAA
TTGCCTGAAAAAATTTCACAAACTAACTTGCATGAGGTGGAGCATGTTATTATTCCGGAA
CATCTTCGTGTGCCAGAATATGAGCAGACCAAGTTAAGGTTTGGCAGTTTCACATCTGGT
TTGGATTCGGAACAAGTATCTGCCTCGACCCCACAAGACACTGAGCAACCAGAACATGTA
CAAGAGTCAGTTCAACAGGCAAGTGAATATGATAGTTTGGATGCTGGACCTGATGACATG
GATGAGCAAGCTAGATCTTCACAACACCTGTCCACATCAACGGCTGAGATTTCCTTGCCC
CCATCTGAGGATAGTGATCGAATGAGTGGTCAAGTAGAGAATGATGATGGCCTGGGCTTA
GTTCAGAGCGACACTCCAATTGGAGCAGCAGACGGTGACAATACCCAAATCACCTCGACT
TTGACTGCTTTTTCGGCTTATAGTCATGAAGATCCTAATATGCATACAAACAATGAGGCC
CAGTTATACGGACTGGTGGAGCCTAATGTACATCCGCAAGTATTAGCTTCCTCTTCTCAG
GCTTTAAATCCACAGATTGTGAGCAACAGCCCTGTTTCGATCTCGTCACAGCAGCAGCAG
CATATCTCCCAGCAACAAGCCGCAGCACAGATGTACCCTCAAATGCATGTGCAGCATTTT
CCAAATTTCATGCCATATCGACAACTCTATTCTCCAGTTTACCCCATGCCTATGCCAAAC
TATTCGCCAAATGTCCCTTATCCATCAAATGGAAATAATTATCTTCAGATGCCCAGTGGA
GGTTCACATTTAACTGCAGGAAGCGTGAAGTATGGAGTTTCACAGTTTAAACCACTCCCA
TCTGGTAACCCTTCTGGCTATGGAAATTACACTCATCCAGCTGGTTTTACAATGGGTTCT
CCTGGTGTTATTGGAGCCACAGTTGGTGTTGATGATGTCAATAGGATGAAGTACAAGGAC
AACATTTATGCCTCAACTCCACAGGTCGAGACATCTGACATCTGGATTCAGCAAGCTAGA
GAGATGCCACCTATGCAGGTTCCTTCATATTACAACATACCAGGTCAAGCAACACCAGGT
GCTTTTGTGCCAAATCCAGCAAATGCATCTTTCAATGCTACAGCTCAATCCTCTCATGTG
CAGTTCCCAGGCTTGTACCATCCTCAGCAACCTCCCTCTATTGTAAGTCCGCACCCCATG
GTGCATCAACAGGTGCCATCGGCCATTGGTCCCAATGTTGGGGTTGGGGTGGCAGCTCCA
GGCCCGCAAGTTGGAGCTTATCAGCAACCACAGCTTGGCCATATGAATTGGAGACCCAGC
TTTTGA

Peptide Sequence

PEP ID

Zm00001d044979_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:9:9108335:9115092:1 gene:Zm00001d044979 transcript:Zm00001d044979_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative DUF1296 domain containing family protein

Sequence

MFSTLVQSGRNRSPATTSGDQITHQNAMQNSNSDTTQGKRDAQGTTEKHVKPYLKNPQNE
QHFPGSDPAHGSANVRIAGGTVGPAQRHVGVVNSTRQFAARSGSQMHAPSGSYANIQRGS
FTSVGASGRYSAFMSRNIQQNQRPDTMFRGRPTVRSFVAQNTNRYHQGSTSNQKAVHPIK
EWKPKSTKKSPTIDADNSIADATSPSASNCESANTLNVNELPEKISQTNLHEVEHVIIPE
HLRVPEYEQTKLRFGSFTSGLDSEQVSASTPQDTEQPEHVQESVQQASEYDSLDAGPDDM
DEQARSSQHLSTSTAEISLPPSEDSDRMSGQVENDDGLGLVQSDTPIGAADGDNTQITST
LTAFSAYSHEDPNMHTNNEAQLYGLVEPNVHPQVLASSSQALNPQIVSNSPVSISSQQQQ
HISQQQAAAQMYPQMHVQHFPNFMPYRQLYSPVYPMPMPNYSPNVPYPSNGNNYLQMPSG
GSHLTAGSVKYGVSQFKPLPSGNPSGYGNYTHPAGFTMGSPGVIGATVGVDDVNRMKYKD
NIYASTPQVETSDIWIQQAREMPPMQVPSYYNIPGQATPGAFVPNPANASFNATAQSSHV
QFPGLYHPQQPPSIVSPHPMVHQQVPSAIGPNVGVGVAAPGPQVGAYQQPQLGHMNWRPS
F

Transcript Sequence

Transcript ID

Zm00001d044979_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:9108335:9115092:1 gene:Zm00001d044979 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative DUF1296 domain containing family protein

Sequence

ATTGTCTATGTTCAGTACTCTTGTTCAGTCTGGTCGAAACCGCTCACCTGCTACAACCTC
AGGTGACCAGATCACACATCAAAATGCTATGCAGAACTCCAACTCTGACACAACCCAAGG
GAAGAGGGATGCTCAAGGTACTACAGAGAAGCATGTGAAGCCATATTTGAAGAACCCTCA
GAATGAGCAGCACTTTCCAGGTTCTGACCCAGCTCATGGGTCAGCCAATGTTAGAATTGC
CGGTGGAACTGTTGGACCTGCTCAACGTCATGTTGGAGTTGTTAATTCTACTAGGCAATT
TGCTGCCCGTTCGGGTTCTCAGATGCATGCACCAAGTGGTTCTTATGCAAATATTCAGAG
GGGGAGTTTTACCTCAGTAGGGGCATCTGGGCGTTACTCAGCTTTCATGTCTAGAAACAT
TCAACAAAACCAGAGACCTGATACAATGTTTCGTGGAAGGCCCACTGTTAGATCTTTTGT
TGCACAAAACACCAACAGATATCACCAGGGTTCTACTAGCAACCAAAAAGCAGTACACCC
TATTAAGGAGTGGAAGCCAAAATCGACAAAGAAGTCACCGACCATTGATGCAGATAACAG
TATAGCTGATGCTACATCTCCTTCAGCTAGCAACTGTGAAAGTGCCAACACACTGAATGT
AAACGAATTGCCTGAAAAAATTTCACAAACTAACTTGCATGAGGTGGAGCATGTTATTAT
TCCGGAACATCTTCGTGTGCCAGAATATGAGCAGACCAAGTTAAGGTTTGGCAGTTTCAC
ATCTGGTTTGGATTCGGAACAAGTATCTGCCTCGACCCCACAAGACACTGAGCAACCAGA
ACATGTACAAGAGTCAGTTCAACAGGCAAGTGAATATGATAGTTTGGATGCTGGACCTGA
TGACATGGATGAGCAAGCTAGATCTTCACAACACCTGTCCACATCAACGGCTGAGATTTC
CTTGCCCCCATCTGAGGATAGTGATCGAATGAGTGGTCAAGTAGAGAATGATGATGGCCT
GGGCTTAGTTCAGAGCGACACTCCAATTGGAGCAGCAGACGGTGACAATACCCAAATCAC
CTCGACTTTGACTGCTTTTTCGGCTTATAGTCATGAAGATCCTAATATGCATACAAACAA
TGAGGCCCAGTTATACGGACTGGTGGAGCCTAATGTACATCCGCAAGTATTAGCTTCCTC
TTCTCAGGCTTTAAATCCACAGATTGTGAGCAACAGCCCTGTTTCGATCTCGTCACAGCA
GCAGCAGCATATCTCCCAGCAACAAGCCGCAGCACAGATGTACCCTCAAATGCATGTGCA
GCATTTTCCAAATTTCATGCCATATCGACAACTCTATTCTCCAGTTTACCCCATGCCTAT
GCCAAACTATTCGCCAAATGTCCCTTATCCATCAAATGGAAATAATTATCTTCAGATGCC
CAGTGGAGGTTCACATTTAACTGCAGGAAGCGTGAAGTATGGAGTTTCACAGTTTAAACC
ACTCCCATCTGGTAACCCTTCTGGCTATGGAAATTACACTCATCCAGCTGGTTTTACAAT
GGGTTCTCCTGGTGTTATTGGAGCCACAGTTGGTGTTGATGATGTCAATAGGATGAAGTA
CAAGGACAACATTTATGCCTCAACTCCACAGGTCGAGACATCTGACATCTGGATTCAGCA
AGCTAGAGAGATGCCACCTATGCAGGTTCCTTCATATTACAACATACCAGGTCAAGCAAC
ACCAGGTGCTTTTGTGCCAAATCCAGCAAATGCATCTTTCAATGCTACAGCTCAATCCTC
TCATGTGCAGTTCCCAGGCTTGTACCATCCTCAGCAACCTCCCTCTATTGTAAGTCCGCA
CCCCATGGTGCATCAACAGGTGCCATCGGCCATTGGTCCCAATGTTGGGGTTGGGGTGGC
AGCTCCAGGCCCGCAAGTTGGAGCTTATCAGCAACCACAGCTTGGCCATATGAATTGGAG
ACCCAGCTTTTGAAGAAGGTTTCTTAATTATCTGTAATTAGGGGGGGTCACAAGAGCCTT
TATGTAACAACAGTAGGCTCCTTTTAACAGGAAGCACCTTTGTTTTTAGTGCAGCTCTTT
CTGATCTATTTAAGCTATAACGAGGTTTTTGTTAGCCTTTCCATCCCCCAAGTGAATTCA
GTATCCCATCTGAACTGGTATGATGTAGATTATGAGTTAAAACATTGGGCAAAATCTCGC
ACGAGCCCAAGGTTGAGTGCCTTCCATTTTGTTATATTGTTTTGTTTCCT