Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044971_T015
CDS Infomation	cds chromosome:B73_RefGen_v4:9:8648239:8655039:1 gene:Zm00001d044971 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative transcription elongation factor SPT5 homolog 1
Sequence	ATGCATATTCGTGTGGAACGGAGGCGAGATAAAGAATCTGGGGAGTACTTTGAGTGGGTT GATAATTTGAAGTTTAAAGATGGTTTCTTGTACAAATCAGTCTCAACTAAATCAATCCAC AAAAGTAATATTCAACCGACTTTCGATGAGCTTGAGAAGTTTAAGAAGCCTGGTGATGAC ATGAATGGCGACATGGCTAGTTTGTCTACTCTATTTGCAAACAGGAAAAAAGGGCATTTT ATGAAGGGTGATGCTGTCATTGTTATTAAAGGCGACTTGAAAAATCTGGAGGGATGGGTT GAAAAAGTAGAGGATGAAACCGTTCACATCAGACCAAAAATATCTGATCTTCCGAAAACA TTAGCCTTCAATGAAAAGGAGCTTTGCAAATATTTCAAGCCTGGTGACCATGTCAAGGTG ATCTCAGGTGTCCAAGAAGGTGCTACTGGCATGGTCGTTAAAGTGGAAGGGCATGTCTTG ATCATTTTGTCTGACACAACTAAAGAACATATCCGTGTGTTTGCTGATCATGTCGTCGAA AGCTCTGAAATCACCACAGGAATAACCAGAATTGGTGATTATGAACTGCATGATCTTGTC CTTTTAGACAACTTGTCATTTGGAGTAATTATAAGGGTGGAAGCTGAAGCATTTCAGGTT CTGAAAGGAGTGCCAGATAGACCTGAAGTTGTGCTCGTGAAACTAAGAGAAATAAAAAGC AAAATTGAAAGGCGCTCATCAGCTAAAGATCGTTCTAATAATATTATCTCTGCAAAGGAT GTTGTAAGGGTTGTTGAAGGAGCATGCAAGGGGAAACAAGGACCTGTGGAACACATACAC AAGGGGATGCTGTTTATCTATGACAGGCATCACCTTGAACATGCAGGTTTTATTTGTGCA AAAGCGCAATCTTGCCTTCTTGTTGGTGGATCAACTGGTGGCCGTCGAGGAAATGGTATG GACACAGCTGATGCACGGCTTGATGCTTTGCGATCTTCAGCAAGCATTCTGCAATCTCCA GGAAGGCTGCCCCCAAGAGGACCTAATATGAATTATGGTGGAAGGTTTGGAGGCGGCCGT GGTGGTAGAGGATATGATGCCTTGGTGGGTAAATGTATCAAAATTAAATCTGGCCCTTAT AAGGGATACCGTGGCCGTGTTAAAGAGGTGACTGGTGCACTCGTACGTGTAGAGCTTGAT TCATTGATGAAGATTGTCACAGTTAAAAGAGATGATATCGCTGACACACCTACAGTCGCG ACGCCATTCCGTGAACCTCGTTATTCATTGGGTGGTGAAACACCAATGCACCCGTCTCGA ACACCGCATCATGCTTATCAGACTCCAATGCGGGACCCTGGAGCAACACCAATACATGAT GGAATGCGGACTCCCATGCGAAGTCGAGCCTGGGCTCCTATGAGTCCTCCAAGGGACAAT TGGGAAGATGGAAATCCTGCTACTTGGGGTAGCAGTCCAGCTTACCAGCCAAACTTTTCA GCCAGGAACCCCACAAGCTCGGCCATATGA

Peptide Sequence

PEP ID	Zm00001d044971_P015
PEP Infomation	pep chromosome:B73_RefGen_v4:9:8648239:8655039:1 gene:Zm00001d044971 transcript:Zm00001d044971_T015 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative transcription elongation factor SPT5 homolog 1
Sequence	MHIRVERRRDKESGEYFEWVDNLKFKDGFLYKSVSTKSIHKSNIQPTFDELEKFKKPGDD MNGDMASLSTLFANRKKGHFMKGDAVIVIKGDLKNLEGWVEKVEDETVHIRPKISDLPKT LAFNEKELCKYFKPGDHVKVISGVQEGATGMVVKVEGHVLIILSDTTKEHIRVFADHVVE SSEITTGITRIGDYELHDLVLLDNLSFGVIIRVEAEAFQVLKGVPDRPEVVLVKLREIKS KIERRSSAKDRSNNIISAKDVVRVVEGACKGKQGPVEHIHKGMLFIYDRHHLEHAGFICA KAQSCLLVGGSTGGRRGNGMDTADARLDALRSSASILQSPGRLPPRGPNMNYGGRFGGGR GGRGYDALVGKCIKIKSGPYKGYRGRVKEVTGALVRVELDSLMKIVTVKRDDIADTPTVA TPFREPRYSLGGETPMHPSRTPHHAYQTPMRDPGATPIHDGMRTPMRSRAWAPMSPPRDN WEDGNPATWGSSPAYQPNFSARNPTSSAI

Transcript Sequence

Transcript ID	Zm00001d044971_T015
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:8648239:8655039:1 gene:Zm00001d044971 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative transcription elongation factor SPT5 homolog 1
Sequence	TTATGCTTCGGCAAAAATAACATTAGTGCCTATAAAAGAAATGGCAGATGTCCTCTCTGT TGAGAGCAAATCTGTCGATCTGTCAAGGGATTCTTGGGTCCGAATGAAATTGGGCATATA TAAAGGTGACCTTGCTAAGGTTGTTGATGTTGACAATGTACGTCAAAGAGTAGATGTGAA GCTGATCCCTAGAATAGATCTACAAGCTTTGGCTAGTAAACTGGTAAGTTCTAACCCTTG TTTCTCACAATAGGAGTGCTACAAAAAGCATTTGTCCCACCACCACGATTCTTCAATATC GATGAGGCGAGGGAGATGCATATTCGTGTGGAACGGAGGCGAGATAAAGAATCTGGGGAG TACTTTGAGTGGGTTGATAATTTGAAGTTTAAAGATGGTTTCTTGTACAAATCAGTCTCA ACTAAATCAATCCACAAAAGTAATATTCAACCGACTTTCGATGAGCTTGAGAAGTTTAAG AAGCCTGGTGATGACATGAATGGCGACATGGCTAGTTTGTCTACTCTATTTGCAAACAGG AAAAAAGGGCATTTTATGAAGGGTGATGCTGTCATTGTTATTAAAGGCGACTTGAAAAAT CTGGAGGGATGGGTTGAAAAAGTAGAGGATGAAACCGTTCACATCAGACCAAAAATATCT GATCTTCCGAAAACATTAGCCTTCAATGAAAAGGAGCTTTGCAAATATTTCAAGCCTGGT GACCATGTCAAGGTGATCTCAGGTGTCCAAGAAGGTGCTACTGGCATGGTCGTTAAAGTG GAAGGGCATGTCTTGATCATTTTGTCTGACACAACTAAAGAACATATCCGTGTGTTTGCT GATCATGTCGTCGAAAGCTCTGAAATCACCACAGGAATAACCAGAATTGGTGATTATGAA CTGCATGATCTTGTCCTTTTAGACAACTTGTCATTTGGAGTAATTATAAGGGTGGAAGCT GAAGCATTTCAGGTTCTGAAAGGAGTGCCAGATAGACCTGAAGTTGTGCTCGTGAAACTA AGAGAAATAAAAAGCAAAATTGAAAGGCGCTCATCAGCTAAAGATCGTTCTAATAATATT ATCTCTGCAAAGGATGTTGTAAGGGTTGTTGAAGGAGCATGCAAGGGGAAACAAGGACCT GTGGAACACATACACAAGGGGATGCTGTTTATCTATGACAGGCATCACCTTGAACATGCA GGTTTTATTTGTGCAAAAGCGCAATCTTGCCTTCTTGTTGGTGGATCAACTGGTGGCCGT CGAGGAAATGGTATGGACACAGCTGATGCACGGCTTGATGCTTTGCGATCTTCAGCAAGC ATTCTGCAATCTCCAGGAAGGCTGCCCCCAAGAGGACCTAATATGAATTATGGTGGAAGG TTTGGAGGCGGCCGTGGTGGTAGAGGATATGATGCCTTGGTGGGTAAATGTATCAAAATT AAATCTGGCCCTTATAAGGGATACCGTGGCCGTGTTAAAGAGGTGACTGGTGCACTCGTA CGTGTAGAGCTTGATTCATTGATGAAGATTGTCACAGTTAAAAGAGATGATATCGCTGAC ACACCTACAGTCGCGACGCCATTCCGTGAACCTCGTTATTCATTGGGTGGTGAAACACCA ATGCACCCGTCTCGAACACCGCATCATGCTTATCAGACTCCAATGCGGGACCCTGGAGCA ACACCAATACATGATGGAATGCGGACTCCCATGCGAAGTCGAGCCTGGGCTCCTATGAGT CCTCCAAGGGACAATTGGGAAGATGGAAATCCTGCTACTTGGGGTAGCAGTCCAGCTTAC CAGCCAAACTTTTCAGCCAGGAACCCCACAAGCTCGGCCATATGAAGCCCCCACACCTGG ATCGGGGTGGGCAAATACTCCAGGAGTTAGTTTCAATGACGCTCCTACTCCCAGGGATAA CTATGCAAATGCCCCAAGTCCATACGTGCCTTCCACACCTGTTGGTCAACCAATGACGCC AAACTCAGCCTCGTACCTTCCAGGCACACCTGGTGGTCAACCAATGACCCCAGGCAATGC TGGGATGGATATGCTGTCCCCAATAATAGGTGGTGATGGTGAAGTTGCATGGCTGTTGCC GGATGTTTTGGTCAATGTGTTGAGGGGAGGTGATGACGGCCCTGGCGTGGTTAGGGAAGT ACTCGGGGATGGATCTTGCCGGGTTGCACTTGGGTCGTCGGGCAACGGTGACGTGGTGAC GGTCCTTGCGAACGAGGTCGAGGTCATCAGGCCGAAGAAGAGCGACAGGATCAAGATATT GAACGGCAATTTCCGTGGGTACACAGGAAAGCTCATAGGTATAGATGGTTCTGACGGAAT AGTGAGGCTTGACGAAACATACGAAGTTAAGATCTTAGATATGGTGATTTTGGCCAAACT GGCCACTTAAGATCTTAGATGTATATGTTGTAACGTGTCCGTCATAGAACGTATTCTGTA ACAATGCCCTCGTTTGCAATAAAGCTTT