Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044816_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:3595060:3596502:-1 gene:Zm00001d044816 gene_biotype:protein_coding transcript_biotype:protein_coding description:Casparian strip membrane protein 1

Sequence

ATGAAAGGATCCAGCGAGCATGGCGAGACCTCGAAGCAGGCGCCCCTGGGCAGCAGGGGT
GTCAGCAAAGGAGTGTCCGTGCTTGATCTAATACTTCGCTTCATTGCCATCATCGGCACC
CTCGCTAGCGCCATTGCAATGGGCACCACCAACGAGACGCTGCCTTTCTTCACGCAGTTC
ATCCGGTTCAAGGCGCAGTACAGCGATCTCCCTACTCTCACGTTCTTCGTCGTGGCGAAT
TCCATTGTCTGCGCTTATCTCACCCTGTCGCTCCCACTATCTATAGTGCACATCATTAGG
AGCAGGGCTAAATACAGCAGGCTGCTCTTGGTCGTTCTTGACGCGGCAATGCTAGCATTG
GTGACTGCGGGAGCATCTGCGGCAGCGGCCATTGTGTACTTAGCGCACAAAGGCAACGTC
AGAGCAAACTGGCTTGCCATTTGCCAGCAGTTTGACTCGTTCTGCGAGCGTATCTCTGGA
TCCCTCGTTGGTTCGTTCGGAGCCATGGTCATGCTCGTACTGCTGCTACTACTCTCCGCC
ATTGCTCTAGCCAGGCGCTAG

Peptide Sequence

PEP ID

Zm00001d044816_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:3595060:3596502:-1 gene:Zm00001d044816 transcript:Zm00001d044816_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Casparian strip membrane protein 1

Sequence

MKGSSEHGETSKQAPLGSRGVSKGVSVLDLILRFIAIIGTLASAIAMGTTNETLPFFTQF
IRFKAQYSDLPTLTFFVVANSIVCAYLTLSLPLSIVHIIRSRAKYSRLLLVVLDAAMLAL
VTAGASAAAAIVYLAHKGNVRANWLAICQQFDSFCERISGSLVGSFGAMVMLVLLLLLSA
IALARR

Transcript Sequence

Transcript ID

Zm00001d044816_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:3595060:3596502:-1 gene:Zm00001d044816 gene_biotype:protein_coding transcript_biotype:protein_coding description:Casparian strip membrane protein 1

Sequence

AGCTCTGTGCTCTCCAAATCAGCTGAGCAACCAGGCCAGTTCCACCAAGCTAAGGAGGTG
AGAATCTCTGTAAAACGCTAAAGGAAAAAAAAATGAAAGGATCCAGCGAGCATGGCGAGA
CCTCGAAGCAGGCGCCCCTGGGCAGCAGGGGTGTCAGCAAAGGAGTGTCCGTGCTTGATC
TAATACTTCGCTTCATTGCCATCATCGGCACCCTCGCTAGCGCCATTGCAATGGGCACCA
CCAACGAGACGCTGCCTTTCTTCACGCAGTTCATCCGGTTCAAGGCGCAGTACAGCGATC
TCCCTACTCTCACGTTCTTCGTCGTGGCGAATTCCATTGTCTGCGCTTATCTCACCCTGT
CGCTCCCACTATCTATAGTGCACATCATTAGGAGCAGGGCTAAATACAGCAGGCTGCTCT
TGGTCGTTCTTGACGCGGCAATGCTAGCATTGGTGACTGCGGGAGCATCTGCGGCAGCGG
CCATTGTGTACTTAGCGCACAAAGGCAACGTCAGAGCAAACTGGCTTGCCATTTGCCAGC
AGTTTGACTCGTTCTGCGAGCGTATCTCTGGATCCCTCGTTGGTTCGTTCGGAGCCATGG
TCATGCTCGTACTGCTGCTACTACTCTCCGCCATTGCTCTAGCCAGGCGCTAGGCGGTGC
GTGTTGCGGTTATTCGACTCCGCTATCCTTGTGTAATCATACGTGTGCCTATTATTATAC
CTCTCGTGCTATGATCCTCTCATATATCCCCAATTGTTGGCTTGATTCTAAACTTCTTTT
CTTCTGGTGGTGTGCACTATCATGTATAGAAGCTACAAAAAAAAATAGGTGAACTATTAT
GTATGGATCGCCGTAGTTTCTGAAAGATTTGTTGGGTATATTGTGTTCACTTATCAGAAT
AAAAACATGGAAGAAGCTCGTTGCCGAGAGCCTAACTTTACCGAGTGCGGCTTTCGGCAA
AGTCTGTTTTGCCGAGTGTCCGACAAAAGACACTCGGCAAAGAGACCGACACTCGGCAAA
GCTTCGGATTCCGGTAGTGTATTGTGTTCACTTATCAGAACAAAAACATGAAAGATTATC
TTATAAATCCATGCCTGCTAGCTACTGGCAATGAAACCGTGCTGGTTTTGACTTGATTGT
TGCCAAGGGATTTAGCAACTATTTCCAATCTCTGGTGTACAATAGTACCAGTACAAGCAC
AAATGAAAAGATATTCAT