Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044814_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:9:3487022:3498869:1 gene:Zm00001d044814 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase domain superfamily protein

Sequence

ATGATAGATCCTGGTACTCTTATTTCATCAGATGGTGCTGACCTGGGTAGAGAATTGGAA
GACAGCTTAGTCGTAGATAATCAACATGTTAACAAAGATGACACTAGCACTCAGTTACTT
TCCTCTTTCAGTGAAGCTTCAAGTTCCATGCACAGTTCATTTGAAAATGGATCGCTTGAA
AAAGGATTTATTTGCAATGCTGGGCATTTTGGTCCATATGAAGCAACAACTGCCCATAGT
GACAATGATGTGCTTGGGTCTGGGGTATCAAGTTCATTTGATGAGCTATCGGTCAGCACA
TATGCATGTGAAAACATACCTATTATTCATGAATCTAATACAGATCATACCATGACTGAA
AAAAGCAAAGATAAGTCGATCACATCAAATAATTCGTCATCATGTTCGCCTCCATCTTCT
GAGATAGGCAGTACTCCTGCTGTACGAAGGAAAAAGGTCAAAGACGTCTCGGAGTATATG
ATTAGTGCTGCAAAAGAGAACCCTCAGATAGCAGAAAGGATCCATGCTGTGTTACTTGAA
AGTGGTGTTGTGCCACCACCTGACTTGTTTTCAGAAGAATCTAAGGAACAACCAAAGGAC
CTGATTGTTTACGACACATCTCTGTTTCAAACAACAGATGAAATGATAAGGACAATGAAT
GAGCTTGAATCCACAGCACACGATGGTTGTGCTGGTCTTGGTCCTTCATTGCCACCTGAT
CCTGGACATGAGCTCCAAACAAAGATTGTTCCTTATCGGATGCCTCCTGACCTCAAGCCT
GTCCAGGGATTAGGTGTTTACCATAAGTTTGATTTCCGGGATAACATCAATCCCTCTATA
CCTCTCTATGAACCAAGTCCAGCTCCTCAGGAAAATCCATTACAACTTATAAAGCAAATG
CCTGTTACAGCTGCTGCTGTTGCAACAGCTGCAGTGGTTGCATCTTCAATGGTTGTTGCT
GCTGCGAAATCTAACAGCGATATTAAACTAGATGTGCCAGTTGCAGCAGCTGCCACTGCT
GCTGCAGTTGTTGCTACTACAGCTGCTGTTAACCAACAATATGAATACTTGGATCCGGGT
TGTCAATTGCTTTGCTTGCCAAGTTCATCAAATAAATTAATCCAAAAAGGTAGACATGAC
TTGTTGGATGATGATCAGCTGGAAACAAATCATGGACAGGATAATGCCCTTGAGCGTGAA
AAGGATTTGGTTCAAGCACCCCAGGAAGCTGAGCGAATCTCTGATAGGTCAACTGGGACA
GAGAGTGCAAGATCTGAAATTTCTCTTGATAAAATCGCAGAGTTTGAAATCCAGTGGGAA
GAACTTACCCTTGGAGAACGAGTTGGGCTGGGATCTTTCGGAGAAGTGTATAGAGGTGAA
TGGCATGAAACAGAAGTCGCAGTCAAGAAATTCTTGCAACAAGATATTTCAAGTGATGCT
CTGGAAGAATTTAGAACTGAGGTGGGAATAATGAGAAGACTGCGTCATCCTAATGTTGTT
CTTTTTATGGGTGCTGTCACTCGTGTTCCTCATCTTTCTATCGTGACTGAATTTCTGCCA
AGGGGTAGTTTATTTCGGTTAATCCATAGGCCCAATAACCAGTTGGATCAAAAAAGGCGT
TTAAGGATGGCACTTGATGTGGCACGTGGTATGAATTATTTACACAATTGCACCCCAGTC
ATAGTTCACCGAGACTTGAAATCTCCAAATCTACTTGTTGACAAAAATTGGGTTGTGAAG
GTCTGTGATTTTGGTTTATCACGTCTGAAACATAGTACCTTCCTTTCGTCAAGATCCGCA
GCTGGAACAGCGGAGTGGATGGCACCAGAAATACTTCGAAATGAACCATCAGATGAGAAA
TGTGACGTCTTCAGCTATGGGGTCATATTATGGGAGCTCTGTACATTGCTGCAGCCATGG
GAAGGTATGAATCCCATGCAGGTTGTTGGAGCTGTTGGTTTTCAGCAACGACGGCTTGAT
ATTCCTGGTGGTGTGGATCCTGCTGTAGCAGAGATAATAAGGAGATGCTGGCAGACTGAT
CCAAGGATGCGGCCATCATTTTCAGAGATCATGGCTACTTTGAGACCATTGTTAAAAAAC
ATGCCTGCCAACCAACCTACCAGGAAGCGGGCACAACAAACAGATGATTAA

Peptide Sequence

PEP ID

Zm00001d044814_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:9:3487022:3498869:1 gene:Zm00001d044814 transcript:Zm00001d044814_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase domain superfamily protein

Sequence

MIDPGTLISSDGADLGRELEDSLVVDNQHVNKDDTSTQLLSSFSEASSSMHSSFENGSLE
KGFICNAGHFGPYEATTAHSDNDVLGSGVSSSFDELSVSTYACENIPIIHESNTDHTMTE
KSKDKSITSNNSSSCSPPSSEIGSTPAVRRKKVKDVSEYMISAAKENPQIAERIHAVLLE
SGVVPPPDLFSEESKEQPKDLIVYDTSLFQTTDEMIRTMNELESTAHDGCAGLGPSLPPD
PGHELQTKIVPYRMPPDLKPVQGLGVYHKFDFRDNINPSIPLYEPSPAPQENPLQLIKQM
PVTAAAVATAAVVASSMVVAAAKSNSDIKLDVPVAAAATAAAVVATTAAVNQQYEYLDPG
CQLLCLPSSSNKLIQKGRHDLLDDDQLETNHGQDNALEREKDLVQAPQEAERISDRSTGT
ESARSEISLDKIAEFEIQWEELTLGERVGLGSFGEVYRGEWHETEVAVKKFLQQDISSDA
LEEFRTEVGIMRRLRHPNVVLFMGAVTRVPHLSIVTEFLPRGSLFRLIHRPNNQLDQKRR
LRMALDVARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRLKHSTFLSSRSA
AGTAEWMAPEILRNEPSDEKCDVFSYGVILWELCTLLQPWEGMNPMQVVGAVGFQQRRLD
IPGGVDPAVAEIIRRCWQTDPRMRPSFSEIMATLRPLLKNMPANQPTRKRAQQTDD

Transcript Sequence

Transcript ID

Zm00001d044814_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:3487022:3498869:1 gene:Zm00001d044814 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase domain superfamily protein

Sequence

AGGTTTTGGCAGATAGCCTTGCTGTTCCTTGCCGATTAGTTAAAGGAAGGCAGTACACTG
GATCAGATGATGGAGCTTTGAACATTGTGAAATTTAATGATGGAAGGGAGTGCATTGTTG
ATCTCATGATAGATCCTGGTACTCTTATTTCATCAGATGGTGCTGACCTGGGTAGAGAAT
TGGAAGACAGCTTAGTCGTAGATAATCAACATGTTAACAAAGATGACACTAGCACTCAGT
TACTTTCCTCTTTCAGTGAAGCTTCAAGTTCCATGCACAGTTCATTTGAAAATGGATCGC
TTGAAAAAGGATTTATTTGCAATGCTGGGCATTTTGGTCCATATGAAGCAACAACTGCCC
ATAGTGACAATGATGTGCTTGGGTCTGGGGTATCAAGTTCATTTGATGAGCTATCGGTCA
GCACATATGCATGTGAAAACATACCTATTATTCATGAATCTAATACAGATCATACCATGA
CTGAAAAAAGCAAAGATAAGTCGATCACATCAAATAATTCGTCATCATGTTCGCCTCCAT
CTTCTGAGATAGGCAGTACTCCTGCTGTACGAAGGAAAAAGGTCAAAGACGTCTCGGAGT
ATATGATTAGTGCTGCAAAAGAGAACCCTCAGATAGCAGAAAGGATCCATGCTGTGTTAC
TTGAAAGTGGTGTTGTGCCACCACCTGACTTGTTTTCAGAAGAATCTAAGGAACAACCAA
AGGACCTGATTGTTTACGACACATCTCTGTTTCAAACAACAGATGAAATGATAAGGACAA
TGAATGAGCTTGAATCCACAGCACACGATGGTTGTGCTGGTCTTGGTCCTTCATTGCCAC
CTGATCCTGGACATGAGCTCCAAACAAAGATTGTTCCTTATCGGATGCCTCCTGACCTCA
AGCCTGTCCAGGGATTAGGTGTTTACCATAAGTTTGATTTCCGGGATAACATCAATCCCT
CTATACCTCTCTATGAACCAAGTCCAGCTCCTCAGGAAAATCCATTACAACTTATAAAGC
AAATGCCTGTTACAGCTGCTGCTGTTGCAACAGCTGCAGTGGTTGCATCTTCAATGGTTG
TTGCTGCTGCGAAATCTAACAGCGATATTAAACTAGATGTGCCAGTTGCAGCAGCTGCCA
CTGCTGCTGCAGTTGTTGCTACTACAGCTGCTGTTAACCAACAATATGAATACTTGGATC
CGGGTTGTCAATTGCTTTGCTTGCCAAGTTCATCAAATAAATTAATCCAAAAAGGTAGAC
ATGACTTGTTGGATGATGATCAGCTGGAAACAAATCATGGACAGGATAATGCCCTTGAGC
GTGAAAAGGATTTGGTTCAAGCACCCCAGGAAGCTGAGCGAATCTCTGATAGGTCAACTG
GGACAGAGAGTGCAAGATCTGAAATTTCTCTTGATAAAATCGCAGAGTTTGAAATCCAGT
GGGAAGAACTTACCCTTGGAGAACGAGTTGGGCTGGGATCTTTCGGAGAAGTGTATAGAG
GTGAATGGCATGAAACAGAAGTCGCAGTCAAGAAATTCTTGCAACAAGATATTTCAAGTG
ATGCTCTGGAAGAATTTAGAACTGAGGTGGGAATAATGAGAAGACTGCGTCATCCTAATG
TTGTTCTTTTTATGGGTGCTGTCACTCGTGTTCCTCATCTTTCTATCGTGACTGAATTTC
TGCCAAGGGGTAGTTTATTTCGGTTAATCCATAGGCCCAATAACCAGTTGGATCAAAAAA
GGCGTTTAAGGATGGCACTTGATGTGGCACGTGGTATGAATTATTTACACAATTGCACCC
CAGTCATAGTTCACCGAGACTTGAAATCTCCAAATCTACTTGTTGACAAAAATTGGGTTG
TGAAGGTCTGTGATTTTGGTTTATCACGTCTGAAACATAGTACCTTCCTTTCGTCAAGAT
CCGCAGCTGGAACAGCGGAGTGGATGGCACCAGAAATACTTCGAAATGAACCATCAGATG
AGAAATGTGACGTCTTCAGCTATGGGGTCATATTATGGGAGCTCTGTACATTGCTGCAGC
CATGGGAAGGTATGAATCCCATGCAGGTTGTTGGAGCTGTTGGTTTTCAGCAACGACGGC
TTGATATTCCTGGTGGTGTGGATCCTGCTGTAGCAGAGATAATAAGGAGATGCTGGCAGA
CTGATCCAAGGATGCGGCCATCATTTTCAGAGATCATGGCTACTTTGAGACCATTGTTAA
AAAACATGCCTGCCAACCAACCTACCAGGAAGCGGGCACAACAAACAGATGATTAAGAAT
ATATTGGTCAGTATCAGCTGAAGACACAGGCCAAAGAGAGACTGCATTGGTTTGTCTTGC
TCTTGCCTTCCCAGCTTCAAGCAATTGGCCATCTGTAACTATTACCATTGTTTTGTACAG
TACGCCAAATGCGTATTTGATGAAGAACAGGTGAATTTTGGTCCTTTTGCCTTCAGCGTT
TGGTTCTCCATTGGAGCCAGCGGAATGCTGTCTATATCTATCTGATGAAAGCCGACCCAA
ATAACACAGATCCATGAAGCCAAAGAAAAGAAAGGGAAAAGAAAATTTGTGAAAGTTCGT
GCATACTATTTTTGCAGACACAATGGTTACTGGAGTCAGAAGTTGACATGTCATGTTGTA
ACAGGATCATCGTCTTCTGTTCAGTTAGGCCTTATTTTTGCTAGTCCTCGAACTAATGGA
AAACTATTCCATCTTTAAGGCCCCATCAAATTGTAATGTTTTACTATGAAAAGGTTGGCT
CACCCTTGT