Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044693_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:235061755:235065086:1 gene:Zm00001d044693 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucan phosphatase LSF2 chloroplastic
Sequence

ATGGCGGCCATGGCGAACACCTCTCGTCTCCCCACCCCCTGCAGCCTCCCAACCATCAGC
ATCGGCGCTAAGAGCAGGAGGCTAGCTGTGGCGGCCGTCAGATGCGGTCCCGGCGGCAGC
AGGAGCCACCGGAGGAGCCTTGGGGTCTTGCTGTGTCGATCCTCGTCCACGGCCGGAGCC
CAAGGGAGCACGAGGATGGAGGACTATAACACCGCCATGAAGCGGATGATGCGTAACCCC
TACGAGTACCATCACGATCTCGGCATGAACTATGCTGTCATAAGTGAGAGCTTGATTGTT
GGCTCACAGCCTCAGAAGCCTGAAGATATCGATCGCTTGAAAAATGAAGAGCGAGTAGCA
TATATTCTTTGCTTACAGCAGGACAAGGACATTGAATATTGGGGCATTGACTTCCAATCC
ATTGTCAATAGGTGCAAAGAACTTGGCATTCAGCACATCAGGAGACCGGCCGTGGATTTT
GATCCAGACTCACTGAGGTCGCAACTGCCGAAAGCAGTTTCGGCGCTAGAATGGGCTACG
TCGCAGCGCAAAGGGCGGGTTTATGTCCACTGCACCGCTGGGCTTGGGAGAGCACCTGCG
GTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATCTTAACACGGCTTATCAGAAG
CTAACCTCCATAAGGCCCTGTGGACCCAGCAAGAGAGCCATCCGCGCCGCAACCTATGAT
CTAGCTAAGAACGATCCATCCAAAGAGCCTTTTGAGAACCTTCCGGAGCACGCTTTTGAG
GGCGTTGCAGACTGGGAGAGGAAGTTGATTCATGACCGGGTGCGTGCTCTTCACGAAGCA
TGA

Peptide Sequence

PEP ID

Zm00001d044693_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:235061755:235065086:1 gene:Zm00001d044693 transcript:Zm00001d044693_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucan phosphatase LSF2 chloroplastic
Sequence

MAAMANTSRLPTPCSLPTISIGAKSRRLAVAAVRCGPGGSRSHRRSLGVLLCRSSSTAGA
QGSTRMEDYNTAMKRMMRNPYEYHHDLGMNYAVISESLIVGSQPQKPEDIDRLKNEERVA
YILCLQQDKDIEYWGIDFQSIVNRCKELGIQHIRRPAVDFDPDSLRSQLPKAVSALEWAT
SQRKGRVYVHCTAGLGRAPAVAIAYMFWFENMDLNTAYQKLTSIRPCGPSKRAIRAATYD
LAKNDPSKEPFENLPEHAFEGVADWERKLIHDRVRALHEA

Transcript Sequence

Transcript ID

Zm00001d044693_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:235061755:235065086:1 gene:Zm00001d044693 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucan phosphatase LSF2 chloroplastic
Sequence

GGTTCTGGGCCTATTCACGGCATTCAGGGGGAAATGGGTGAGTCCCAAGCTCTTCCTCTC
ATCAACTTCTTCCCGTTCCACGCAGACCAACCAGACATTAAGAATTGAGATCCTGCAACC
GCAACAATGGCGGCCATGGCGAACACCTCTCGTCTCCCCACCCCCTGCAGCCTCCCAACC
ATCAGCATCGGCGCTAAGAGCAGGAGGCTAGCTGTGGCGGCCGTCAGATGCGGTCCCGGC
GGCAGCAGGAGCCACCGGAGGAGCCTTGGGGTCTTGCTGTGTCGATCCTCGTCCACGGCC
GGAGCCCAAGGGAGCACGAGGATGGAGGACTATAACACCGCCATGAAGCGGATGATGCGT
AACCCCTACGAGTACCATCACGATCTCGGCATGAACTATGCTGTCATAAGTGAGAGCTTG
ATTGTTGGCTCACAGCCTCAGAAGCCTGAAGATATCGATCGCTTGAAAAATGAAGAGCGA
GTAGCATATATTCTTTGCTTACAGCAGGACAAGGACATTGAATATTGGGGCATTGACTTC
CAATCCATTGTCAATAGGTGCAAAGAACTTGGCATTCAGCACATCAGGAGACCGGCCGTG
GATTTTGATCCAGACTCACTGAGGTCGCAACTGCCGAAAGCAGTTTCGGCGCTAGAATGG
GCTACGTCGCAGCGCAAAGGGCGGGTTTATGTCCACTGCACCGCTGGGCTTGGGAGAGCA
CCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATCTTAACACGGCTTAT
CAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCAAGAGAGCCATCCGCGCCGCAACC
TATGATCTAGCTAAGAACGATCCATCCAAAGAGCCTTTTGAGAACCTTCCGGAGCACGCT
TTTGAGGGCGTTGCAGACTGGGAGAGGAAGTTGATTCATGACCGGGTGCGTGCTCTTCAC
GAAGCATGAGCAGAAGAAACTTTCTCCACGCGTCAAGAAGGGGGGAACTAAGCTTCCTAA
TGAGGCAATGGCTGTGCTTCGGCACCAGATCATTAGATGTCGAAACGATAAAGTTTGTTC
TCAATAAAGCTTATACGACGCCATATTTGTTGCTGGGTAGTTTGTAATAGTCACTAATAG
GAAGGAAATAAAGAGGGCCTTGCATGAGATTCCAGCTGGTGTCTTCACCTTTGTGGTGAC
TGCAAATGAGATGCCCATCCATTAATGGCATGGCGCATTGTAGGTATATTGTGTAAATAA
ACCTGTGGATCTTCATTTGAGGAACATCACTTCTGTAAAAGTTTATTTGAAGATACGGCC
AGCTTTGCAAATCTA