Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044657_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:234224168:234238691:1 gene:Zm00001d044657 gene_biotype:protein_coding transcript_biotype:protein_coding description:ENTH/VHS family protein
Sequence

ATGTCTGGTGCGAAAGCGGGTGTAGACGTGGAAACAAGGGACGGCGGTGCCGGTGGCTCC
TTCAGTGAGGAGAGGCTCGTTGATAAGCTCAACAAGCTCAACAACACAGCGGCGAGCATT
CAGACACTTTCACAATGGTGCATTTTTCACCGCAAGAGGGCCAGAAGGGTTGTAGACACA
TGGGAAAAGCAGTTCAGTAGTGCAACAAAGGATAAGAAAATATCATTCCTGTTTCTATCA
AATGATATCTTGCAAAACAGCAAGCGCAAAGGAGGTGATTATGTGCATGAGTTCTGGAGG
GTTCTACCCAGATCATTGAAACATGTCTACGAAAATGGGGGAGAAGATGGAAAGAAACTG
GTGGCTAGACTAATAGGAATTTGGGATGAACGCAAAGTTTTCGGAACCCGTATTGAAAGT
CTGAAATACAGCATTTTTGGTGACAACCCTCCTATATTCGATAACAATGGGAATAAAAAT
AATTCAAACCCTGGCTCTAACCCCTTAAATTCCAAAGTTGCAAGGAAGGATTCCAGTACA
GTACTAAAAAAACTGACTGTTGGTGGTATGCCTGAAAAGATTGTGACTGCATACCAATCT
GTGCTTGATCAACATTTTGATGAAGACACAGTTTTGAACAAATGTAAGAGTACTGTTAGT
GTTCTGGAAAAGATAAAGAAAGATATAGAAGATGCTAGTACCAAAGGTGATCAGCCTGCC
TCAACAATGATTTCTGACCTCCCAGAACAGGAAACAATCCTGAAGCAGTGCATTGCACAA
CTTGAAAGCGTATATGTGGTGAGGATATTGCTGATAAATCAATTAAAAGAAGCTCTCGTC
GAACAGGAGTCAAAGTCAGAAGTTCTTCGCAGCCAGTTGCAAGTCGCTCGTTCAGAGGCT
GAACATGCCATTCAACTTAGGCAACGATTTGATGGTGCCGTTGTCTCAAATGGCACAGGA
TCTAATTCTAGCCTGCTAATGATTACCCCAACAGAACAGACAGCTGCTATGATACAGGGT
TCTGGAGTAAGGCTGACGTCTCCTCAGTTGCAATCACTGAATCCAGCAACCTCGCTTGCC
CCTACAGTCAGTGCAGTGGGAGATGAGCCGAAGAGAACGGCAGCAGCAATGGCAGACAAG
CTGACATCTTTGTCGGCACCTGTGCAGGTTCTGAGCTCCATTTTCTCATCTTTTGTTGCC
GAGCATGGCGCCTCGCTATCTTCCAAGAACAGTGGACCGGCTTCTGGAGAACTCTCCGGG
GAACCGCCGGGCTTCCAGATTGAAAAGAGGCCTAGGCTTGAGAAAACCGTGCAGGCCAGT
GACATGGGTGCTCCTCCCTTTCCTGTGCAAGTACCGCAGCTGCAACAACAGACTGGAGCA
GCGCCCACACAGCTACCAACACAGATCAACCAAGCACCGGGTCCATTTGCACCGCCACTG
CCGTCTCTTTTGCCACCGTTTCTGCAACAGTTCGGCCAAAGTACTGGAGGAATGATGGGA
GTGGGACCTTTCGGGATGATGTCCGGCTCTATGCCACCTCCGCCTCCATTGCCCAACATT
ATGCCGGCAGGTTTTCCAGGACCAAGCGGTCCACCTCCACCTCCGCTTCCACCGGCCCAG
AACCAACCCCAACAGCAGCAGCAGTCTCCTCAGGCACCACAGCAATCACCCACATCAGCA
GGATTCTTCCAGTCATCAGCAGGCATGGGGTTCTTCCCACCAGTGCAGGTGCAACAGTCT
CCGTCTGCCCAACGACAATGA

Peptide Sequence

PEP ID

Zm00001d044657_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:234224168:234238691:1 gene:Zm00001d044657 transcript:Zm00001d044657_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:ENTH/VHS family protein
Sequence

MSGAKAGVDVETRDGGAGGSFSEERLVDKLNKLNNTAASIQTLSQWCIFHRKRARRVVDT
WEKQFSSATKDKKISFLFLSNDILQNSKRKGGDYVHEFWRVLPRSLKHVYENGGEDGKKL
VARLIGIWDERKVFGTRIESLKYSIFGDNPPIFDNNGNKNNSNPGSNPLNSKVARKDSST
VLKKLTVGGMPEKIVTAYQSVLDQHFDEDTVLNKCKSTVSVLEKIKKDIEDASTKGDQPA
STMISDLPEQETILKQCIAQLESVYVVRILLINQLKEALVEQESKSEVLRSQLQVARSEA
EHAIQLRQRFDGAVVSNGTGSNSSLLMITPTEQTAAMIQGSGVRLTSPQLQSLNPATSLA
PTVSAVGDEPKRTAAAMADKLTSLSAPVQVLSSIFSSFVAEHGASLSSKNSGPASGELSG
EPPGFQIEKRPRLEKTVQASDMGAPPFPVQVPQLQQQTGAAPTQLPTQINQAPGPFAPPL
PSLLPPFLQQFGQSTGGMMGVGPFGMMSGSMPPPPPLPNIMPAGFPGPSGPPPPPLPPAQ
NQPQQQQQSPQAPQQSPTSAGFFQSSAGMGFFPPVQVQQSPSAQRQ

Transcript Sequence

Transcript ID

Zm00001d044657_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:234224168:234238691:1 gene:Zm00001d044657 gene_biotype:protein_coding transcript_biotype:protein_coding description:ENTH/VHS family protein
Sequence

AGGGTGGAGGCGGAAGCCACAAACCAAACCCTCCTGCGTCTTCCCTCCTGCTTCGTGCTT
CTTCCACTCCCCCTTCTCTTCTGCGGCGCCAAGCTCGAGCTCATCGCCACGGAGCTCGAT
CTTGGGTTTTGGTCTATCCGCGACGAAGGTGAATTAGTTGGAGACTGCGTGATGTCTGGT
GCGAAAGCGGGTGTAGACGTGGAAACAAGGGACGGCGGTGCCGGTGGCTCCTTCAGTGAG
GAGAGGCTCGTTGATAAGCTCAACAAGCTCAACAACACAGCGGCGAGCATTCAGACACTT
TCACAATGGTGCATTTTTCACCGCAAGAGGGCCAGAAGGGTTGTAGACACATGGGAAAAG
CAGTTCAGTAGTGCAACAAAGGATAAGAAAATATCATTCCTGTTTCTATCAAATGATATC
TTGCAAAACAGCAAGCGCAAAGGAGGTGATTATGTGCATGAGTTCTGGAGGGTTCTACCC
AGATCATTGAAACATGTCTACGAAAATGGGGGAGAAGATGGAAAGAAACTGGTGGCTAGA
CTAATAGGAATTTGGGATGAACGCAAAGTTTTCGGAACCCGTATTGAAAGTCTGAAATAC
AGCATTTTTGGTGACAACCCTCCTATATTCGATAACAATGGGAATAAAAATAATTCAAAC
CCTGGCTCTAACCCCTTAAATTCCAAAGTTGCAAGGAAGGATTCCAGTACAGTACTAAAA
AAACTGACTGTTGGTGGTATGCCTGAAAAGATTGTGACTGCATACCAATCTGTGCTTGAT
CAACATTTTGATGAAGACACAGTTTTGAACAAATGTAAGAGTACTGTTAGTGTTCTGGAA
AAGATAAAGAAAGATATAGAAGATGCTAGTACCAAAGGTGATCAGCCTGCCTCAACAATG
ATTTCTGACCTCCCAGAACAGGAAACAATCCTGAAGCAGTGCATTGCACAACTTGAAAGC
GTATATGTGGTGAGGATATTGCTGATAAATCAATTAAAAGAAGCTCTCGTCGAACAGGAG
TCAAAGTCAGAAGTTCTTCGCAGCCAGTTGCAAGTCGCTCGTTCAGAGGCTGAACATGCC
ATTCAACTTAGGCAACGATTTGATGGTGCCGTTGTCTCAAATGGCACAGGATCTAATTCT
AGCCTGCTAATGATTACCCCAACAGAACAGACAGCTGCTATGATACAGGGTTCTGGAGTA
AGGCTGACGTCTCCTCAGTTGCAATCACTGAATCCAGCAACCTCGCTTGCCCCTACAGTC
AGTGCAGTGGGAGATGAGCCGAAGAGAACGGCAGCAGCAATGGCAGACAAGCTGACATCT
TTGTCGGCACCTGTGCAGGTTCTGAGCTCCATTTTCTCATCTTTTGTTGCCGAGCATGGC
GCCTCGCTATCTTCCAAGAACAGTGGACCGGCTTCTGGAGAACTCTCCGGGGAACCGCCG
GGCTTCCAGATTGAAAAGAGGCCTAGGCTTGAGAAAACCGTGCAGGCCAGTGACATGGGT
GCTCCTCCCTTTCCTGTGCAAGTACCGCAGCTGCAACAACAGACTGGAGCAGCGCCCACA
CAGCTACCAACACAGATCAACCAAGCACCGGGTCCATTTGCACCGCCACTGCCGTCTCTT
TTGCCACCGTTTCTGCAACAGTTCGGCCAAAGTACTGGAGGAATGATGGGAGTGGGACCT
TTCGGGATGATGTCCGGCTCTATGCCACCTCCGCCTCCATTGCCCAACATTATGCCGGCA
GGTTTTCCAGGACCAAGCGGTCCACCTCCACCTCCGCTTCCACCGGCCCAGAACCAACCC
CAACAGCAGCAGCAGTCTCCTCAGGCACCACAGCAATCACCCACATCAGCAGGATTCTTC
CAGTCATCAGCAGGCATGGGGTTCTTCCCACCAGTGCAGGTGCAACAGTCTCCGTCTGCC
CAACGACAATGACTCAACGGTGGCATGGCATTCATCGGGCTATAATGGCAGCACTTTGTG
CTAACTTCTGTACATTAACCAATAATCACCTAGCGTCGAGCTTATACGTGGCTGATCCTG
CAAGAGAGGCGCAGGACCGTTGTCACGGTTAGAAAAAAAAACTGTAGAATAGGCTTTTGT
GATGACTCTCGTTTTGGTCAGAGTTGTTTAACTCTTCCTTGTTCTGTGTAGTAGTTAGAT
GTTGTGTCTCTGTCCCCCGTTTGCTTTGATCTCCTGAGGCAAAAGAAAGTGGCACTGGAA
TTGTTGCCCACTGAATCACTGATCGTGCTGTCATTGACATGATGTAAACTGCAAATACTT
GTTCTATTGTTGTTTAAATTTAATTATTTATTATGAT