Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044639_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:233811186:233813372:1 gene:Zm00001d044639 gene_biotype:protein_coding transcript_biotype:protein_coding description:L-type lectin-domain containing receptor kinase IX.1
Sequence

ATGGCGGCCTGCCGTCCCTCCGGCCTCAGCGTCTTGTGCAGCCTCTACCGTCTCTACATC
TGCATGCTGTTCATCCATGTCCCTCGGGCTCACTCGCTGTCCTTCGACCTCAGCTTCTCC
AAACCCCAGAGCCCAGACCTCTCCTCCCAGAAGATAAACTTCAACGGCGACGCGTACCCC
ACTCCAGAAACGCTCGAGCTGACGCGAAACCAGCATGACCAAAGCAGCACCAACAGCATC
GGCCGGGCGACGTACGCGCAGCCGGTGCCGCTGTGGGATGGCGCCACCGGCGAGACGGCC
AGCTTCACCACCACCTTCACCTTCCGGATCAGGCCGGACTCGTGGAGCCCGTACCCCGGC
GACGGGATGGCGTTCTTCCTCGGCCACTACGGGTCAGATATCCCCGTCCAGAGCGGCGGC
GGCATGCTCGGCCTCGTCCCGACCCACACCAACGGCACCGGAAACGGCACCGTCGTCGCC
GTCGAGTTCGACACCTTCCAGAACCCGACGAACGACGACATCAGCAGCAACCACGTGGGC
ATCGACGTCGACTCCCTCAACTCCACGGCGTCCACGGACACCACCTCGCCGACCAAGAAC
CTCACGTCCGGTTACCTGATGGCGGCCACCGTAAGGTACGAGAACGTCACCAGGTTGCTC
GCCTTGGAGCTCACCGTCAACGACACGTCCTACTACGTCAACGCAACTGTCGATCTCAAG
GGCTACCTACCGGAGCGTGTAGCCGTCGGCTTCTCCGCGGCGACTGGAAATGGCGGCGAG
CAGCACCAGGTGCTGTCATGGTCATTCACGTCCACTCTGCCGGAACCACCGGCACCGGCA
CCGGCACCGCCGCCGCATGCGACACCAGACAACAACCAGCCTCCCAAGAAGAAGAGATCA
GTCGGGACCACGGGCCTGATAATCGCCGTGCTTGTGCCTCTGCTATCTCTCCTGGCGTGT
GCGGCAGGCGTGCTGGCAAGGCGAAAACTCAGGGGAAGAAGAAGAAGAAGACCGCCAAAC
GGTAGCAGCGACGACGACAACGATTACCAAGAACAGGACAACGGCAGCAGGGCGGAGCTC
GAGAGAGGAGTGGCTGCCACCGGCCCCCGGCGGTACGCGTACCGCGACCTGGCCGCCGCC
ACCGACAACTTCGCCGAGGACGGCAAGCTCGGTCGCGGTGGCTTCGGGAGCGTCTACAGG
GGCAAACTCACCGTCGCCGGCGAAGAGCGGCCCGTGGCGATCAAGGTGTTGTCGTCGGAG
TCGTCGGCGCAGGGCAGGAAGGAGTTCGAGGCGGAGGTGAGGATCATCAGCCGGCTCAAG
CATCGCAACCTCGTGCAGCTCCTGGGCTGGTGCGACAGCCGGCACGGCCTCCTGCTCGTC
TACGAGCTGGTGGCCCAGGGCAGCCTCGACAGGCATCTCCACGGCAGCGAGCGCTTCTTG
GCGTGGCCGGACAGGCACCAGATCATCCTCGGCCTGGGGTCGGCGCTGCGGTACCTCCAC
CAGGAGTGGGAGCAGCGCGTGGTGCACGGCGACATCAAGCCCAGCAACATCATGCTGGAC
GACTCGCTGGGCGCCAAGCTCGGCGACTTCGGCCTGGCCCGGCTCGGAGACCACGGCGGG
CGCTGGCACACCACCAAGGCCGTGCTCGGCACCGCGGGGTACATCGACCCGGAGTTCGTC
AACACGCGCCACCCGAGCACCCACGCCGACGTGTACAGCTTCGGCATCGTCCTCCTCGAG
GTCGTCTCCGGCCGGTCCCCGGTGGTCCTGCTGCCCGGCGAGCCGCCCTTCGTTCTGCTC
AAGTGGGTGTGGGGCCTGTACGGACGGAACGCGGTCCTCGACGCGGCGGACGAGCAGCTG
AGGGGCGGCGGCGACGACGACGAGTGCATCGAGAGGGCACTCGTCGTCGGGCTCTGGTGC
GCCCACCCTGAGCAGAGCGAGCGGCCGTCCATCGCGCAGGCCATGCACGTCCTGCAGTCG
GCGGACGCCAGGCTGCCGGCGCTCCCGCCGCAGATGTACAAGACGGCGTCGGACCTCGCC
GTCACCGGACGTTCCTACGGCGTTTTGTCCGTGGAAAGCTACAGCGGCGGTGACTCCTCT
ACGACGACTACGACCGCCGGCTACTCCAAAACTTCTTCAGGCTCGTCGACCACGGCCTTG
CTCCGAGATTCAAAAGAGAGACCTTGA

Peptide Sequence

PEP ID

Zm00001d044639_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:233811186:233813372:1 gene:Zm00001d044639 transcript:Zm00001d044639_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:L-type lectin-domain containing receptor kinase IX.1
Sequence

MAACRPSGLSVLCSLYRLYICMLFIHVPRAHSLSFDLSFSKPQSPDLSSQKINFNGDAYP
TPETLELTRNQHDQSSTNSIGRATYAQPVPLWDGATGETASFTTTFTFRIRPDSWSPYPG
DGMAFFLGHYGSDIPVQSGGGMLGLVPTHTNGTGNGTVVAVEFDTFQNPTNDDISSNHVG
IDVDSLNSTASTDTTSPTKNLTSGYLMAATVRYENVTRLLALELTVNDTSYYVNATVDLK
GYLPERVAVGFSAATGNGGEQHQVLSWSFTSTLPEPPAPAPAPPPHATPDNNQPPKKKRS
VGTTGLIIAVLVPLLSLLACAAGVLARRKLRGRRRRRPPNGSSDDDNDYQEQDNGSRAEL
ERGVAATGPRRYAYRDLAAATDNFAEDGKLGRGGFGSVYRGKLTVAGEERPVAIKVLSSE
SSAQGRKEFEAEVRIISRLKHRNLVQLLGWCDSRHGLLLVYELVAQGSLDRHLHGSERFL
AWPDRHQIILGLGSALRYLHQEWEQRVVHGDIKPSNIMLDDSLGAKLGDFGLARLGDHGG
RWHTTKAVLGTAGYIDPEFVNTRHPSTHADVYSFGIVLLEVVSGRSPVVLLPGEPPFVLL
KWVWGLYGRNAVLDAADEQLRGGGDDDECIERALVVGLWCAHPEQSERPSIAQAMHVLQS
ADARLPALPPQMYKTASDLAVTGRSYGVLSVESYSGGDSSTTTTTAGYSKTSSGSSTTAL
LRDSKERP

Transcript Sequence

Transcript ID

Zm00001d044639_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:233811186:233813372:1 gene:Zm00001d044639 gene_biotype:protein_coding transcript_biotype:protein_coding description:L-type lectin-domain containing receptor kinase IX.1
Sequence

ATGGCGGCCTGCCGTCCCTCCGGCCTCAGCGTCTTGTGCAGCCTCTACCGTCTCTACATC
TGCATGCTGTTCATCCATGTCCCTCGGGCTCACTCGCTGTCCTTCGACCTCAGCTTCTCC
AAACCCCAGAGCCCAGACCTCTCCTCCCAGAAGATAAACTTCAACGGCGACGCGTACCCC
ACTCCAGAAACGCTCGAGCTGACGCGAAACCAGCATGACCAAAGCAGCACCAACAGCATC
GGCCGGGCGACGTACGCGCAGCCGGTGCCGCTGTGGGATGGCGCCACCGGCGAGACGGCC
AGCTTCACCACCACCTTCACCTTCCGGATCAGGCCGGACTCGTGGAGCCCGTACCCCGGC
GACGGGATGGCGTTCTTCCTCGGCCACTACGGGTCAGATATCCCCGTCCAGAGCGGCGGC
GGCATGCTCGGCCTCGTCCCGACCCACACCAACGGCACCGGAAACGGCACCGTCGTCGCC
GTCGAGTTCGACACCTTCCAGAACCCGACGAACGACGACATCAGCAGCAACCACGTGGGC
ATCGACGTCGACTCCCTCAACTCCACGGCGTCCACGGACACCACCTCGCCGACCAAGAAC
CTCACGTCCGGTTACCTGATGGCGGCCACCGTAAGGTACGAGAACGTCACCAGGTTGCTC
GCCTTGGAGCTCACCGTCAACGACACGTCCTACTACGTCAACGCAACTGTCGATCTCAAG
GGCTACCTACCGGAGCGTGTAGCCGTCGGCTTCTCCGCGGCGACTGGAAATGGCGGCGAG
CAGCACCAGGTGCTGTCATGGTCATTCACGTCCACTCTGCCGGAACCACCGGCACCGGCA
CCGGCACCGCCGCCGCATGCGACACCAGACAACAACCAGCCTCCCAAGAAGAAGAGATCA
GTCGGGACCACGGGCCTGATAATCGCCGTGCTTGTGCCTCTGCTATCTCTCCTGGCGTGT
GCGGCAGGCGTGCTGGCAAGGCGAAAACTCAGGGGAAGAAGAAGAAGAAGACCGCCAAAC
GGTAGCAGCGACGACGACAACGATTACCAAGAACAGGACAACGGCAGCAGGGCGGAGCTC
GAGAGAGGAGTGGCTGCCACCGGCCCCCGGCGGTACGCGTACCGCGACCTGGCCGCCGCC
ACCGACAACTTCGCCGAGGACGGCAAGCTCGGTCGCGGTGGCTTCGGGAGCGTCTACAGG
GGCAAACTCACCGTCGCCGGCGAAGAGCGGCCCGTGGCGATCAAGGTGTTGTCGTCGGAG
TCGTCGGCGCAGGGCAGGAAGGAGTTCGAGGCGGAGGTGAGGATCATCAGCCGGCTCAAG
CATCGCAACCTCGTGCAGCTCCTGGGCTGGTGCGACAGCCGGCACGGCCTCCTGCTCGTC
TACGAGCTGGTGGCCCAGGGCAGCCTCGACAGGCATCTCCACGGCAGCGAGCGCTTCTTG
GCGTGGCCGGACAGGCACCAGATCATCCTCGGCCTGGGGTCGGCGCTGCGGTACCTCCAC
CAGGAGTGGGAGCAGCGCGTGGTGCACGGCGACATCAAGCCCAGCAACATCATGCTGGAC
GACTCGCTGGGCGCCAAGCTCGGCGACTTCGGCCTGGCCCGGCTCGGAGACCACGGCGGG
CGCTGGCACACCACCAAGGCCGTGCTCGGCACCGCGGGGTACATCGACCCGGAGTTCGTC
AACACGCGCCACCCGAGCACCCACGCCGACGTGTACAGCTTCGGCATCGTCCTCCTCGAG
GTCGTCTCCGGCCGGTCCCCGGTGGTCCTGCTGCCCGGCGAGCCGCCCTTCGTTCTGCTC
AAGTGGGTGTGGGGCCTGTACGGACGGAACGCGGTCCTCGACGCGGCGGACGAGCAGCTG
AGGGGCGGCGGCGACGACGACGAGTGCATCGAGAGGGCACTCGTCGTCGGGCTCTGGTGC
GCCCACCCTGAGCAGAGCGAGCGGCCGTCCATCGCGCAGGCCATGCACGTCCTGCAGTCG
GCGGACGCCAGGCTGCCGGCGCTCCCGCCGCAGATGTACAAGACGGCGTCGGACCTCGCC
GTCACCGGACGTTCCTACGGCGTTTTGTCCGTGGAAAGCTACAGCGGCGGTGACTCCTCT
ACGACGACTACGACCGCCGGCTACTCCAAAACTTCTTCAGGCTCGTCGACCACGGCCTTG
CTCCGAGATTCAAAAGAGAGACCTTGA