Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044602_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:233157901:233171823:-1 gene:Zm00001d044602 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 SUMO-protein ligase SIZ1
Sequence

ATGGCGTCGCCGGACGACCCCGTGCTCTCCGCTTGCAAGAAAAACTTGAGCCACTTCAGA
ATAAAAGAGCTCAAGGATGTTCTACACCAACTTGGACTTTCAAAGCAAGGAAAGAAGCAG
GACCTAGTGGACAGAGTTATGGCAGTGTTGTTGAGCCAGCAAGATCAAGCCTTTGAAACG
AATGGCTTACCAAAGGCAAAATCAGCGGTGAAAATAGTGGAGGACACATTTAGAAAAATG
CAAGACCCTACAAATACTGTTGCAGTCTCAAGGAGCCACGAATTAGGAGACAGTGTTACG
TGTAAAAAGAAACCGGATGATTCTGCTCAGGCAGTTAAGGTTCGTTGCCCTTGTGGTGAC
TCCAAGCCAAATGATTCCATGATTAAGTGTATTGATCCACAATGCAACATATGGCAACAT
GTTGGCTGCGTCGTCATACCCGATACTGAGAAATCCGCGGACAATATTTCTCCTGAATTA
CCTTCCTGCTTTTATTGTGAAGTGTGCCGACTTAGCAGGGCTGATCCTTTTTGGGTCACT
GTGAACCATCTGTTACTCCCTATCTTAATAGGACCCTCTACTGTAGCAGCAGACGGGTCA
TACACTGTACAGTATACCGCAAAAAGCTTTCAGCTTTCAAGAGCTAATAGAGAAATTCTG
CAGCAAGCTGAATGCAATATTCAGGTTTGGTGTATCCTTCTCAGTGACAAAGTACCTTTT
AGGATGCACTGGCCTTTACACTCTGACATGCAAGTTAATGGTATTTATGTTAGGGTGGTT
AACAGGCAACCCACACAAAAGTTAGGGGCCAATGGTAGAGACGATGGTCCACTATTAACA
GATTACCTGAAGGAGGGACCTAACAAGATTTCTCTATCAAGAAATGACACTCGTACTTTC
TGTTTGGGTATCAGAATTGCCAAGAGGAGATCTCTAGAACAGGTCCTAAATTTGGTGCCA
AAGGAACAAGATGGTGAAAACTTCGATGACGCCCTTGCACGTGTGCGTCGCTGTGTTGGT
GGTGGAGCTGAGGCAAATAATGCAGACAGTGATAGTGATATCGAAGTTGTGGCTGATTTT
GTCTCTGTGAATCTTCGGTGCCCTATGACTGCTTCAAGGATACAGATCGCTGGTAGGTTC
AAGTCCTGTGCTCACATGGGCTGCTTTGATTTAGAAGCTTTTATTGAAATAAACCAACGT
TCCCGGAAGTGGCAATGCCCAATATGCCTGAAGAATTACTCTCTAGAGAACATAATAATT
GATCCTTATTTCAATCGCATCACTTCTTTGATCAAAAGCTGCGGAGATGATACATCTGAA
ATTGATGTCAAACCTGATGGTTCCTGGAGAGTTAAGGGCAGACCTAAACTGAAGGACCTT
ACACAGTGGCATCTACCAGATGGTACTCTCTCTCTGTCCACAGATACAGCAGCCAAACCT
GGAATGTGCATTGTAAAGCACGAGGTCAAAGAAGAGCCATTGTCTGAAGAGGTGGGATGT
CATCTTAAGTTGGGACTTAGGAAAAAAAGCAATGGCCAGTGGGAAATTAGCAAGAGAGTG
GATGCTGATCTGGTGCCGTCTTCTGGTAACGACCATGACCATTCAGGACACGATGAAAAC
AAAAACTGCATCACTCACTCAAGCAATATTGATGATACAAACATTGCAGATGAAGGTTAT
AATTTAGAGCCAGCAACAAATGGTTATCCCATGACCCATGTCCATGATCTTGACTCTTCA
TCCGCAGACGAAAATGGTCCTCCAGCATCGACAGGGCAGGATATAGTAGTTTTGAGTGAC
TCGGATGATGATGCTATCATGGTGTTGTCTCCCGGTGCTGTGAACTGTGGCTCGATGCAT
AACACTGGAAATCTGTTTCCACCCAACACACCTGAAAATTTAGGAGTGTGTAGTGGAGAA
ACTGGTGGATGCCCCAAGGAGACATCATTCCTTGCATTAAAAGAAGATTTTGGTGATCCG
GGGTTGTCATTTTGGGAAAGTCATGGTAGTCCCCGAGATGCTTCTACTTCCCAGATCCCC
GATGCCAGTACAAAGGCAGTAGATAATCCAGGTGAAGTGGACAACTACCCTGCCAATGAT
CAATCTAAGCAAGGGCAAGTTTCTGGGGCTGATTTTGGAGTAGCAGCAAATCCGGTGCCA
TTGGAAGATGGGCATGATAGCGCACTGCAACCTTGTTCAATGAGTGAAAGAGATAGTGCC
ATGGGTCTTGCTAGCCTGGGAGCGGATACTCAATCATGTGTTGATGTCCATTCTGACAAT
TGGACATCTGTCAGCATTAGTGGCCGTGATGAAGTTTTAACTGCTGCCAAAATTGCATCT
AGGAAAAGGAGCAATCCTGGAGACAGAATAGAAGATTTAGATGATGATTTTGAATCTGCG
CCCATTGTTCCTACAGTTTCATCACCATCACTTTGCCACTGCACAAACGTATCAGAATCT
TTGGCAGGCTTGTGA

Peptide Sequence

PEP ID

Zm00001d044602_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:233157901:233171823:-1 gene:Zm00001d044602 transcript:Zm00001d044602_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 SUMO-protein ligase SIZ1
Sequence

MASPDDPVLSACKKNLSHFRIKELKDVLHQLGLSKQGKKQDLVDRVMAVLLSQQDQAFET
NGLPKAKSAVKIVEDTFRKMQDPTNTVAVSRSHELGDSVTCKKKPDDSAQAVKVRCPCGD
SKPNDSMIKCIDPQCNIWQHVGCVVIPDTEKSADNISPELPSCFYCEVCRLSRADPFWVT
VNHLLLPILIGPSTVAADGSYTVQYTAKSFQLSRANREILQQAECNIQVWCILLSDKVPF
RMHWPLHSDMQVNGIYVRVVNRQPTQKLGANGRDDGPLLTDYLKEGPNKISLSRNDTRTF
CLGIRIAKRRSLEQVLNLVPKEQDGENFDDALARVRRCVGGGAEANNADSDSDIEVVADF
VSVNLRCPMTASRIQIAGRFKSCAHMGCFDLEAFIEINQRSRKWQCPICLKNYSLENIII
DPYFNRITSLIKSCGDDTSEIDVKPDGSWRVKGRPKLKDLTQWHLPDGTLSLSTDTAAKP
GMCIVKHEVKEEPLSEEVGCHLKLGLRKKSNGQWEISKRVDADLVPSSGNDHDHSGHDEN
KNCITHSSNIDDTNIADEGYNLEPATNGYPMTHVHDLDSSSADENGPPASTGQDIVVLSD
SDDDAIMVLSPGAVNCGSMHNTGNLFPPNTPENLGVCSGETGGCPKETSFLALKEDFGDP
GLSFWESHGSPRDASTSQIPDASTKAVDNPGEVDNYPANDQSKQGQVSGADFGVAANPVP
LEDGHDSALQPCSMSERDSAMGLASLGADTQSCVDVHSDNWTSVSISGRDEVLTAAKIAS
RKRSNPGDRIEDLDDDFESAPIVPTVSSPSLCHCTNVSESLAGL

Transcript Sequence

Transcript ID

Zm00001d044602_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:233157901:233171823:-1 gene:Zm00001d044602 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 SUMO-protein ligase SIZ1
Sequence

GGGCCGCAGCTAGGCGGACCAAGAACGCGTACCGTTCCACCTGTTGGCTTGGCTAGCGCT
TTCGTCTTCCTCCGCTCCACTCGATGCACGCACGTGGAGAAGAACACCGCCGCCGCCGCC
AGCGCTACCGGGTTTTCGCAGCAAAAAAATAAAAAAAGGAAAAGGAGAGGGTGGGGTGTA
GGCAGGGGGGGGGGGGGGGGGGGGGGGGCGCCACTGCTTCTCTTCAAGACCCGATTCCAC
TCGCGTGTCTGCCCGCCGGCCAGACCTCGAGGAAACAAGGCCTTACTTCCTTGATTACAT
GGCGTCGCCGGACGACCCCGTGCTCTCCGCTTGCAAGAAAAACTTGAGCCACTTCAGAAT
AAAAGAGCTCAAGGATGTTCTACACCAACTTGGACTTTCAAAGCAAGGAAAGAAGCAGGA
CCTAGTGGACAGAGTTATGGCAGTGTTGTTGAGCCAGCAAGATCAAGCCTTTGAAACGAA
TGGCTTACCAAAGGCAAAATCAGCGGTGAAAATAGTGGAGGACACATTTAGAAAAATGCA
AGACCCTACAAATACTGTTGCAGTCTCAAGGAGCCACGAATTAGGAGACAGTGTTACGTG
TAAAAAGAAACCGGATGATTCTGCTCAGGCAGTTAAGGTTCGTTGCCCTTGTGGTGACTC
CAAGCCAAATGATTCCATGATTAAGTGTATTGATCCACAATGCAACATATGGCAACATGT
TGGCTGCGTCGTCATACCCGATACTGAGAAATCCGCGGACAATATTTCTCCTGAATTACC
TTCCTGCTTTTATTGTGAAGTGTGCCGACTTAGCAGGGCTGATCCTTTTTGGGTCACTGT
GAACCATCTGTTACTCCCTATCTTAATAGGACCCTCTACTGTAGCAGCAGACGGGTCATA
CACTGTACAGTATACCGCAAAAAGCTTTCAGCTTTCAAGAGCTAATAGAGAAATTCTGCA
GCAAGCTGAATGCAATATTCAGGTTTGGTGTATCCTTCTCAGTGACAAAGTACCTTTTAG
GATGCACTGGCCTTTACACTCTGACATGCAAGTTAATGGTATTTATGTTAGGGTGGTTAA
CAGGCAACCCACACAAAAGTTAGGGGCCAATGGTAGAGACGATGGTCCACTATTAACAGA
TTACCTGAAGGAGGGACCTAACAAGATTTCTCTATCAAGAAATGACACTCGTACTTTCTG
TTTGGGTATCAGAATTGCCAAGAGGAGATCTCTAGAACAGGTCCTAAATTTGGTGCCAAA
GGAACAAGATGGTGAAAACTTCGATGACGCCCTTGCACGTGTGCGTCGCTGTGTTGGTGG
TGGAGCTGAGGCAAATAATGCAGACAGTGATAGTGATATCGAAGTTGTGGCTGATTTTGT
CTCTGTGAATCTTCGGTGCCCTATGACTGCTTCAAGGATACAGATCGCTGGTAGGTTCAA
GTCCTGTGCTCACATGGGCTGCTTTGATTTAGAAGCTTTTATTGAAATAAACCAACGTTC
CCGGAAGTGGCAATGCCCAATATGCCTGAAGAATTACTCTCTAGAGAACATAATAATTGA
TCCTTATTTCAATCGCATCACTTCTTTGATCAAAAGCTGCGGAGATGATACATCTGAAAT
TGATGTCAAACCTGATGGTTCCTGGAGAGTTAAGGGCAGACCTAAACTGAAGGACCTTAC
ACAGTGGCATCTACCAGATGGTACTCTCTCTCTGTCCACAGATACAGCAGCCAAACCTGG
AATGTGCATTGTAAAGCACGAGGTCAAAGAAGAGCCATTGTCTGAAGAGGTGGGATGTCA
TCTTAAGTTGGGACTTAGGAAAAAAAGCAATGGCCAGTGGGAAATTAGCAAGAGAGTGGA
TGCTGATCTGGTGCCGTCTTCTGGTAACGACCATGACCATTCAGGACACGATGAAAACAA
AAACTGCATCACTCACTCAAGCAATATTGATGATACAAACATTGCAGATGAAGGTTATAA
TTTAGAGCCAGCAACAAATGGTTATCCCATGACCCATGTCCATGATCTTGACTCTTCATC
CGCAGACGAAAATGGTCCTCCAGCATCGACAGGGCAGGATATAGTAGTTTTGAGTGACTC
GGATGATGATGCTATCATGGTGTTGTCTCCCGGTGCTGTGAACTGTGGCTCGATGCATAA
CACTGGAAATCTGTTTCCACCCAACACACCTGAAAATTTAGGAGTGTGTAGTGGAGAAAC
TGGTGGATGCCCCAAGGAGACATCATTCCTTGCATTAAAAGAAGATTTTGGTGATCCGGG
GTTGTCATTTTGGGAAAGTCATGGTAGTCCCCGAGATGCTTCTACTTCCCAGATCCCCGA
TGCCAGTACAAAGGCAGTAGATAATCCAGGTGAAGTGGACAACTACCCTGCCAATGATCA
ATCTAAGCAAGGGCAAGTTTCTGGGGCTGATTTTGGAGTAGCAGCAAATCCGGTGCCATT
GGAAGATGGGCATGATAGCGCACTGCAACCTTGTTCAATGAGTGAAAGAGATAGTGCCAT
GGGTCTTGCTAGCCTGGGAGCGGATACTCAATCATGTGTTGATGTCCATTCTGACAATTG
GACATCTGTCAGCATTAGTGGCCGTGATGAAGTTTTAACTGCTGCCAAAATTGCATCTAG
GAAAAGGAGCAATCCTGGAGACAGAATAGAAGATTTAGATGATGATTTTGAATCTGCGCC
CATTGTTCCTACAGTTTCATCACCATCACTTTGCCACTGCACAAACGTATCAGAATCTTT
GGCAGGCTTGTGA