Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044599_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:3:233049093:233055422:1 gene:Zm00001d044599 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:blue-light receptor phototropin 1 description:Nonphototropic hypocotyl 1
Sequence	ATGACGGGCTACTCCTCCAATGAGGTCGTCGGAAGGAACTGCCGCTTCCTTCAAGGTTCT GGGACCGACCCCGTAGAGATTTCCAAGATCAGACAGGCTCTCGCAGCTGGGTCAAATTAC TGTGGCCGTATCCTCAACTACAAGAAGGATGGTACACCATTCTGGAACCTCCTAACCGTT GCCCCCATAAAGGATGAGGATGGCAGGGTCCTCAAGTTCATTGGGATGCAAGTGGAAGTA AGTAAGTACACGGAAGGTAACAAAGATACTGCTCTTCGTCCAAATGGATTGCCAGAGTCA CTCATCAAATATGATGCAAGGCAGAAGGATCATGCTCGTAGCTCAGTCTCGGAGCTCCTA CTTGCCCTGAAGGATCCACGGTCATTGTCAGAATCAAGAAACAATACCTTAAAAAGGAAA TCACAGGAATCAGCAGGTTCAGCTCTAGTTCCCGGCAAGAGAAGCTCCGAAACTGGATCC CGTCGTAACTCACATAGTGGAATGAGAAACTCTCTACAAAAAATCAGTGAGGTGCCTGAA GGAGGGAATAAGACCAGGAAATCTGGTTTGCGTTCTTTTATGGGCCTTATTGGTATGGGA CATGGGAATGTAGAGAAGAACATTCTAAAACCAAGGGAAGATCCCCTACTTGATAGCGAT GATGAGAGACCAGATAGCTTCGATGACGATTTCAGGAAGAAAGAAATGAGAAAGGGCATA GATTTGGCTACCACACTTGAACGTATTGAAAAGAATTTTGTCATCACCGACCCGAGGTTA CCAGATAATCCAATTATATTTGCATCGGATAGCTTTTTGCGTTTGACAGAGTATTGCCGC GAAGAAATATTGGGAAGAAACTGCAGGTTTCTTCAAGGACCTGAAACTGACCGTGGGACA GTAAAGAAGATAAGAGATGCCATAGATAACCAAACAGAAGTTACTGTTCAGCTGATAAAT TATACAAAGAGCGGTAAGAAATTCTGGAACCTCTTTCACTTGCAGCCTATGCGTGATCAG AAGGGTGATGTTCAATACTTCATTGGGGTTCAATTGGATGGAACTGAGCGTGTTCGAGAG GCTGCTGCAAAAGATGGTGCCATACTGGTTAAGAAAACTGCAGACAATATTGATGAGGCT GCAAAGGAGCTTCCGGATGCTAATTTGGTTTGTCTAAATAAACATGAATTTTGTATAATC TAA

Peptide Sequence

PEP ID	Zm00001d044599_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:3:233049093:233055422:1 gene:Zm00001d044599 transcript:Zm00001d044599_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:blue-light receptor phototropin 1 description:Nonphototropic hypocotyl 1
Sequence	MTGYSSNEVVGRNCRFLQGSGTDPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTV APIKDEDGRVLKFIGMQVEVSKYTEGNKDTALRPNGLPESLIKYDARQKDHARSSVSELL LALKDPRSLSESRNNTLKRKSQESAGSALVPGKRSSETGSRRNSHSGMRNSLQKISEVPE GGNKTRKSGLRSFMGLIGMGHGNVEKNILKPREDPLLDSDDERPDSFDDDFRKKEMRKGI DLATTLERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGT VKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTERVRE AAAKDGAILVKKTADNIDEAAKELPDANLVCLNKHEFCII

Transcript Sequence

Transcript ID	Zm00001d044599_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:233049093:233055422:1 gene:Zm00001d044599 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:blue-light receptor phototropin 1 description:Nonphototropic hypocotyl 1
Sequence	GCCGCCGGAGATGGCGGCGATGCTGACGTGGGTCGGGCGACACAGAGGGCCGCCGAGTGG GGCCTCGTCCTCCAGACCGACGAGCACACCGGCCGCCCCCAGGGTGTCGTCGCCCGTCCC TCCGGTTCCAACCGCACCAGCGAGAGTGGCAACTCCATCGACGAGAGGGCCGCCGCCGCC GGTGCTGGTAGAGCTCTCCCCCGGGTGTCGGAGGAGCTTCGCGCCGCGCTCTCAGCGTTC CAGCAGACCTTCGTCGTGTCCGATGCCACCCGCCCTGACCACCCCATCCTCTACGCCAGC GCTGGATTCTTCAACATGACGGGCTACTCCTCCAATGAGGTCGTCGGAAGGAACTGCCGC TTCCTTCAAGGTTCTGGGACCGACCCCGTAGAGATTTCCAAGATCAGACAGGCTCTCGCA GCTGGGTCAAATTACTGTGGCCGTATCCTCAACTACAAGAAGGATGGTACACCATTCTGG AACCTCCTAACCGTTGCCCCCATAAAGGATGAGGATGGCAGGGTCCTCAAGTTCATTGGG ATGCAAGTGGAAGTAAGTAAGTACACGGAAGGTAACAAAGATACTGCTCTTCGTCCAAAT GGATTGCCAGAGTCACTCATCAAATATGATGCAAGGCAGAAGGATCATGCTCGTAGCTCA GTCTCGGAGCTCCTACTTGCCCTGAAGGATCCACGGTCATTGTCAGAATCAAGAAACAAT ACCTTAAAAAGGAAATCACAGGAATCAGCAGGTTCAGCTCTAGTTCCCGGCAAGAGAAGC TCCGAAACTGGATCCCGTCGTAACTCACATAGTGGAATGAGAAACTCTCTACAAAAAATC AGTGAGGTGCCTGAAGGAGGGAATAAGACCAGGAAATCTGGTTTGCGTTCTTTTATGGGC CTTATTGGTATGGGACATGGGAATGTAGAGAAGAACATTCTAAAACCAAGGGAAGATCCC CTACTTGATAGCGATGATGAGAGACCAGATAGCTTCGATGACGATTTCAGGAAGAAAGAA ATGAGAAAGGGCATAGATTTGGCTACCACACTTGAACGTATTGAAAAGAATTTTGTCATC ACCGACCCGAGGTTACCAGATAATCCAATTATATTTGCATCGGATAGCTTTTTGCGTTTG ACAGAGTATTGCCGCGAAGAAATATTGGGAAGAAACTGCAGGTTTCTTCAAGGACCTGAA ACTGACCGTGGGACAGTAAAGAAGATAAGAGATGCCATAGATAACCAAACAGAAGTTACT GTTCAGCTGATAAATTATACAAAGAGCGGTAAGAAATTCTGGAACCTCTTTCACTTGCAG CCTATGCGTGATCAGAAGGGTGATGTTCAATACTTCATTGGGGTTCAATTGGATGGAACT GAGCGTGTTCGAGAGGCTGCTGCAAAAGATGGTGCCATACTGGTTAAGAAAACTGCAGAC AATATTGATGAGGCTGCAAAGGAGCTTCCGGATGCTAATTTGGTTTGTCTAAATAAACAT GAATTTTGTATAATCTAAAACTAAGTATTACTAGGCATTTGTAATAGAAATTTGTGGTCA TATTCAGAGACCTGAGGATCTATGGGCTAATCACTCAAAACCAGTCTTGCCAAAGCCACA TATGAAGGATACTGCATCGTGGAGAGCCATCCAAAAGGTTCTTGAGAACGGTGAAAGCAT TGATTTGAAACATTTCAGACCAGTAAGGCCTTTAGGATCTGGTGATACTGGCAGGTAAGT ACTTCTATATTATAGTTTCAACTATGGCAATGACTCAGTTTGCATGAATCCATTAGACAC ACTCCTTTCTAATTTTCACTCCCTATTTACGTTTAAACAGTAAACATGTGAATTGTTGTT GAATTGTAGTGTCCACTTGGTGGAGTTGCTTGGCACAGGTGAATACTTTGCCATGAAAGC TATGGATAAAAGTGTCATGCTTAACCGAAACAAGGTCCATAGAGCTACCGCTGAACGACA AATCCTTGATATGTTGGACCACCCATTCCTTCCGACATTGTATGCATCATTTCAGACAAA GACACATATATGTCTTATTGTTGACTATTGTGCTGGTGGGGAACTCTTTATGCTCCTTGA TAGGCAACCTATGAAGGTTCTGAAGGAGGATGCGGTCAGGTTCTATGCTGCAGAAGTGGT CACAGCACTTGAATACCTACATTGCCAAGGTATAATCTACAGAGACTTAAAGCCAGAGAA CATTTTACTTCATAGAGATGGGCACATTTCATTGACAGACTTTGATTTGTCTTGCTTGAC ATCCTGCCGACCACAAGTGTTTCTTCCACACGATATTGATAAGAAGAAAAAGAGGAGGAA GAGCAGGAGTAATCCCATATTTTTTGCTGAACCAATGCGAGCATCAAATTCTTTTGTTGG TACAGAGGAGTACATTGCACCGGAGATTATTACCGGAGCTGGCCATACGAGTGCTGTAGA TTGGTGGGCGCTAGGAATTCTTCTATATGAGATGTTATATGGTTATACACCGTTCAGAGG GAAAACAAGACAAAGGACATTTGCTAATATTCTGCACAAGGATATCAGATTTCCTGCGAG CATACAGGTGAGCCTGGCGGCAAGGCAGCTGATATACCGGTTGTTACACCGAGACCCTGC AAATAGGCTAGGTTCCTATGAGGGCGCTATGGAGATCAAACAACACCCCTTCTTTCGTGG CATAAACTGGGCTCTAGTTCGTGCCGCCACGCCCCCAGAGCTGGAGGCTCCCCTCCAGGA TACATTGGAGGCCACACTGCCTCCTCCTGCAGCTGATGGGGCTCACACCGATATGTTCTG ATCATACATTGGTCCATGATGCTACATGTTAATTTGCTTAAAGGAAGAAAAAATATTAGA TGATGAAGATGCATGACTTTGGCATAGATGAGAACAATAATGTATGTTAAGGACTAATTA TCTTGATC