Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044596_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:232951418:232954214:-1 gene:Zm00001d044596 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; Os11g0100300 protein
Sequence

ATGACGATGAAGCAGCTAGTACAGTTAGTGGCCAAGCCGTTAACGCCGCCACCACCCTGC
TGCAGCTCCTCGTCACAAGACGATGAAGACGACGATGTGGTGCGGCAACTGGTTATGGGC
CGTTGGCGTTCGTCCCTATCGTCAGGCCTCCGTGCCGCCCTCGCCTGCACCATCGTGGGC
CTCGTCTCCCTCTACGCACCGGACGCCCTCCGCAGACACATCACCTTCCCGGCCTTCTCC
TACGTCGTCACGGTCATCCTCGTCACGGACGCCACACTCGGCACGGCCCTGCGCGGCGCG
GTGAGCGCGCTCCACGGCACCCTCATGGGCGCCGCGCCGTCCGTGGTGGCGCTGTGGCTC
GCGCACCGCACGGGCGCCGCGGAGTCGGCGGTGGCCACGTCGGCCGTGGTGGCGCTGACG
GCGTTCGCGGTGGCGCTCCCGGAGTCGGTGGGCCCGGTGGCGAAGCGGATCGCGCTGGGG
CAGGCCATCATAATCTACGTGGCCCGCAGGTTCCAGCCGGGGGAGCGCCCCAGCCGCGGC
TGGGTGCTGCTGCACCCGGCCAACGTGGTGGCGTGCACGGCGCTCGGGGTGGCGGCGGCG
CTGCTGGCCGTGCTGCTTCCCTGGCCGAGGCTGGCCACACGGGAGGCCAAAGACAAGAGC
AGGACGTACAAGGTGGTTGCCTCAGAGAGGGTCAGGGTCCTGGCTGATGCCTTCGTCGTT
GCCGCTGCTGTGGGTGTGGAGGAGGCCGATGAGGGGTGCAGCAGGCAGCGGCGATGGCAG
ATAGCGGCGTGCATGTCGGAGGCCAAGCGGCTGGCCTCCGCAAGTACAACACTCCTCAGC
CGCATGAACGCCATCAAGGAGGATTTGCAGTGGGAGCAGAGAGCAGTGGCGGTGGCGGTG
GAGGAGAAGGATAACAAGGGCAGCATCGAGATGCTCCTGGCAGGAATGCAGATCGCACTC
GCGACCATGCAACAAGCCGACGGCGGCCATGGGAGGAATATAAACATGGTCGGCCTTGTC
ATGGCGATGAGGGACCAGATACGCCTCGCGCTTCTCACGCCCAACAACAAGCAGCAGAGC
AGATCAACATGCACGCCCAGCTACCAGTTGCCAGCTACGAGCTTCGACTATCGCAACCAC
GAGCAGCATCAGCGGGCGTCTTTTTTGTTCATCTTCTCTCTCTACCAGCTCCATCATTGC
TGCTGCGATGGTGGTCCCAAGACGCCTTCGACGGCAGCTACCATGCTGCCCAACGCCAAG
CAGGTAGCGCCGGCGGCAACCACGACGACACGCCAAAAGCTACTACTACTGGAGCAACCA
GCAGCCGACTTACTGCCGGACGACGAGCAAGAAGAAGAAGAAGAAGCAGGTCAGCATGTG
GAGCAGGACGACGGACCATCTTCACAAGCTGGGGCAGCCACTGCAGGAGAGGAGAAGGCT
ACAGCGACGGCGGCAGCGGCGGCGACCAAGGACAAGCACAGCAGGCAGACACGCAGCTGT
CGCCGGCTCGTGGCGGCGGCCAAGTGCGGCTTCTCCCTCGGCCTCGCCGTCCTGCTGGGC
CTGCTCTTCAGCAACGACCACGGCTTCTGGTCGGGCCTCATCGTCGCCACAACCATGACG
GCGGGGCGCGAATCCACCTGGGCCGTGGCCGTGGCGCGCGCCCACGGCACCGCCCTGGGC
TCCATCTACGGCGTGCTGGGCTGCCTGCTCATGTCGCAGCAGCAGCTCGTGGCCATGGAC
CTGCGCTTCGTGGCCCTCCTCCCCTGGATGGTCCTCGCCACCTTCCTCAAACGCAGCCGC
GCCTACGGCCCCGCCGGCGGCGTGGCGGCCGCGCTGTCGGTCGTCATCATCATGGGGCGC
CGCTACGACGAGCCTCCCATGGCCTTCACCATCGCGCGCCTGGTGGAGACCTTCATAGGC
ATCTCCTGCGTCGTCCTGGCGGACCTTGTGTTCCAGCCCGGGGCGAGGCCGTCGGTGCAG
GCCAGGGAGCAGCTCGCCCGCTGCATCGCCGCGCTGGCAGCCTGCAGCCGCCTTGTTGTT
GCTGACCCTGCTGCTTCATCAGAATTATTGAAGAGGGTGCAGCAGGAGCTGGCCCTCTTG
AGGAAGCACGCCGCGGAGGCCGGCAGCGAGCCCACCTACCTGTGGCTGCCGCCGTTCCCG
GCGGCCTGCTACGAAACGATCCAGGGCAGCCTTGGCAGGATGGCACAGCTGCTGCAGCTC
TACCATCAGGCACGCCGCTACATGAGTGTGTCTTTGTCCCAGCAGCAGGTGGACGTGGAC
GATGATATCAACACCATCCAACACCGGCGCTTCAGCAACCTCGCCTCCACCTCCCTCGGC
CACTGCCTTCACATGCTGACAGCAGCAGAAGGCAAGGAGGCCAACAAAAAGCCCAAGGCC
CAGGTCGTCGTTGACCTTGAGGCTGGGACTGCGGCTGCCTGTGGCTGCTGCTACAGGGAT
GACGAGGTGGTGGGCTCCTTCGTAGCGCAGGCAAGAGAGCTGCTGTTGAACGATGACGAC
GACGACGATAGCGTTGAGCAACAACAAGAGGAGGAGAGGTTTTTGGCAGTGTGCTGCCTG
GGCTCCATTGTCCTGTGCATGGAAGAGATCCTCAAGGAGGCCCGGCGGCTGGAGGCGCAC
ATCCTAGACCTCAACAACAACCTGCAACTCAAATCAGCACTCGCTGATATATTATAG

Peptide Sequence

PEP ID

Zm00001d044596_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:232951418:232954214:-1 gene:Zm00001d044596 transcript:Zm00001d044596_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; Os11g0100300 protein
Sequence

MTMKQLVQLVAKPLTPPPPCCSSSSQDDEDDDVVRQLVMGRWRSSLSSGLRAALACTIVG
LVSLYAPDALRRHITFPAFSYVVTVILVTDATLGTALRGAVSALHGTLMGAAPSVVALWL
AHRTGAAESAVATSAVVALTAFAVALPESVGPVAKRIALGQAIIIYVARRFQPGERPSRG
WVLLHPANVVACTALGVAAALLAVLLPWPRLATREAKDKSRTYKVVASERVRVLADAFVV
AAAVGVEEADEGCSRQRRWQIAACMSEAKRLASASTTLLSRMNAIKEDLQWEQRAVAVAV
EEKDNKGSIEMLLAGMQIALATMQQADGGHGRNINMVGLVMAMRDQIRLALLTPNNKQQS
RSTCTPSYQLPATSFDYRNHEQHQRASFLFIFSLYQLHHCCCDGGPKTPSTAATMLPNAK
QVAPAATTTTRQKLLLLEQPAADLLPDDEQEEEEEAGQHVEQDDGPSSQAGAATAGEEKA
TATAAAAATKDKHSRQTRSCRRLVAAAKCGFSLGLAVLLGLLFSNDHGFWSGLIVATTMT
AGRESTWAVAVARAHGTALGSIYGVLGCLLMSQQQLVAMDLRFVALLPWMVLATFLKRSR
AYGPAGGVAAALSVVIIMGRRYDEPPMAFTIARLVETFIGISCVVLADLVFQPGARPSVQ
AREQLARCIAALAACSRLVVADPAASSELLKRVQQELALLRKHAAEAGSEPTYLWLPPFP
AACYETIQGSLGRMAQLLQLYHQARRYMSVSLSQQQVDVDDDINTIQHRRFSNLASTSLG
HCLHMLTAAEGKEANKKPKAQVVVDLEAGTAAACGCCYRDDEVVGSFVAQARELLLNDDD
DDDSVEQQQEEERFLAVCCLGSIVLCMEEILKEARRLEAHILDLNNNLQLKSALADIL

Transcript Sequence

Transcript ID

Zm00001d044596_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:232951418:232954214:-1 gene:Zm00001d044596 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; Os11g0100300 protein
Sequence

ATGACGATGAAGCAGCTAGTACAGTTAGTGGCCAAGCCGTTAACGCCGCCACCACCCTGC
TGCAGCTCCTCGTCACAAGACGATGAAGACGACGATGTGGTGCGGCAACTGGTTATGGGC
CGTTGGCGTTCGTCCCTATCGTCAGGCCTCCGTGCCGCCCTCGCCTGCACCATCGTGGGC
CTCGTCTCCCTCTACGCACCGGACGCCCTCCGCAGACACATCACCTTCCCGGCCTTCTCC
TACGTCGTCACGGTCATCCTCGTCACGGACGCCACACTCGGCACGGCCCTGCGCGGCGCG
GTGAGCGCGCTCCACGGCACCCTCATGGGCGCCGCGCCGTCCGTGGTGGCGCTGTGGCTC
GCGCACCGCACGGGCGCCGCGGAGTCGGCGGTGGCCACGTCGGCCGTGGTGGCGCTGACG
GCGTTCGCGGTGGCGCTCCCGGAGTCGGTGGGCCCGGTGGCGAAGCGGATCGCGCTGGGG
CAGGCCATCATAATCTACGTGGCCCGCAGGTTCCAGCCGGGGGAGCGCCCCAGCCGCGGC
TGGGTGCTGCTGCACCCGGCCAACGTGGTGGCGTGCACGGCGCTCGGGGTGGCGGCGGCG
CTGCTGGCCGTGCTGCTTCCCTGGCCGAGGCTGGCCACACGGGAGGCCAAAGACAAGAGC
AGGACGTACAAGGTGGTTGCCTCAGAGAGGGTCAGGGTCCTGGCTGATGCCTTCGTCGTT
GCCGCTGCTGTGGGTGTGGAGGAGGCCGATGAGGGGTGCAGCAGGCAGCGGCGATGGCAG
ATAGCGGCGTGCATGTCGGAGGCCAAGCGGCTGGCCTCCGCAAGTACAACACTCCTCAGC
CGCATGAACGCCATCAAGGAGGATTTGCAGTGGGAGCAGAGAGCAGTGGCGGTGGCGGTG
GAGGAGAAGGATAACAAGGGCAGCATCGAGATGCTCCTGGCAGGAATGCAGATCGCACTC
GCGACCATGCAACAAGCCGACGGCGGCCATGGGAGGAATATAAACATGGTCGGCCTTGTC
ATGGCGATGAGGGACCAGATACGCCTCGCGCTTCTCACGCCCAACAACAAGCAGCAGAGC
AGATCAACATGCACGCCCAGCTACCAGTTGCCAGCTACGAGCTTCGACTATCGCAACCAC
GAGCAGCATCAGCGGGCGTCTTTTTTGTTCATCTTCTCTCTCTACCAGCTCCATCATTGC
TGCTGCGATGGTGGTCCCAAGACGCCTTCGACGGCAGCTACCATGCTGCCCAACGCCAAG
CAGGTAGCGCCGGCGGCAACCACGACGACACGCCAAAAGCTACTACTACTGGAGCAACCA
GCAGCCGACTTACTGCCGGACGACGAGCAAGAAGAAGAAGAAGAAGCAGGTCAGCATGTG
GAGCAGGACGACGGACCATCTTCACAAGCTGGGGCAGCCACTGCAGGAGAGGAGAAGGCT
ACAGCGACGGCGGCAGCGGCGGCGACCAAGGACAAGCACAGCAGGCAGACACGCAGCTGT
CGCCGGCTCGTGGCGGCGGCCAAGTGCGGCTTCTCCCTCGGCCTCGCCGTCCTGCTGGGC
CTGCTCTTCAGCAACGACCACGGCTTCTGGTCGGGCCTCATCGTCGCCACAACCATGACG
GCGGGGCGCGAATCCACCTGGGCCGTGGCCGTGGCGCGCGCCCACGGCACCGCCCTGGGC
TCCATCTACGGCGTGCTGGGCTGCCTGCTCATGTCGCAGCAGCAGCTCGTGGCCATGGAC
CTGCGCTTCGTGGCCCTCCTCCCCTGGATGGTCCTCGCCACCTTCCTCAAACGCAGCCGC
GCCTACGGCCCCGCCGGCGGCGTGGCGGCCGCGCTGTCGGTCGTCATCATCATGGGGCGC
CGCTACGACGAGCCTCCCATGGCCTTCACCATCGCGCGCCTGGTGGAGACCTTCATAGGC
ATCTCCTGCGTCGTCCTGGCGGACCTTGTGTTCCAGCCCGGGGCGAGGCCGTCGGTGCAG
GCCAGGGAGCAGCTCGCCCGCTGCATCGCCGCGCTGGCAGCCTGCAGCCGCCTTGTTGTT
GCTGACCCTGCTGCTTCATCAGAATTATTGAAGAGGGTGCAGCAGGAGCTGGCCCTCTTG
AGGAAGCACGCCGCGGAGGCCGGCAGCGAGCCCACCTACCTGTGGCTGCCGCCGTTCCCG
GCGGCCTGCTACGAAACGATCCAGGGCAGCCTTGGCAGGATGGCACAGCTGCTGCAGCTC
TACCATCAGGCACGCCGCTACATGAGTGTGTCTTTGTCCCAGCAGCAGGTGGACGTGGAC
GATGATATCAACACCATCCAACACCGGCGCTTCAGCAACCTCGCCTCCACCTCCCTCGGC
CACTGCCTTCACATGCTGACAGCAGCAGAAGGCAAGGAGGCCAACAAAAAGCCCAAGGCC
CAGGTCGTCGTTGACCTTGAGGCTGGGACTGCGGCTGCCTGTGGCTGCTGCTACAGGGAT
GACGAGGTGGTGGGCTCCTTCGTAGCGCAGGCAAGAGAGCTGCTGTTGAACGATGACGAC
GACGACGATAGCGTTGAGCAACAACAAGAGGAGGAGAGGTTTTTGGCAGTGTGCTGCCTG
GGCTCCATTGTCCTGTGCATGGAAGAGATCCTCAAGGAGGCCCGGCGGCTGGAGGCGCAC
ATCCTAGACCTCAACAACAACCTGCAACTCAAATCAGCACTCGCTGATATATTATAG