Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044573_T067
CDS Infomation	cds chromosome:B73_RefGen_v4:3:232095138:232120800:1 gene:Zm00001d044573 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA-processing protein 40A
Sequence	ATGCCAGTTGCAGGGAAGATTAATGTCACTCCAGTGGAGGAGAAAACAAGTGAAGAAGAA CCTGTAGTCTATGCCACTAAGATGGAAGCAAAAAATGCGTTCAAGTCCCTGCTTGAGTCG GTAAATGTGGAGTCTGATTGGACATGGGATCAGACTATGAGAGTCATCATAAATGACAAA AGATATGGTGCTTTGAAAACTCTTGGAGAGAGAAAGCAAGCTTTCAATGAGTACTTGAAC CAGCGCAAAAAGTTTGAAGCCGAAGAAAAACGTATCAAACAGAGGAAAGCACGTGATGAT TTCCTTGCAATGTTGGAAGAAAGCAAGGAGCTTACATCATCAACAAGATGGAGCAAAGCA ATACTTATGTTTGAAGATGATGAAAGATTCAAAGCAGTTGAGCGTCCAAGGGAGCGTGAA GATTTATTTGAGAACTATCTTGTGGAACTGCATAAGAAGGAAAAAGCCAAGGCTGCTGAA GAACACAAAAGATATGTAGCAGAGTACAGAGCTTTTCTAGAATCATGTGACTTCATCAAG GCAAGCACTCAGTGGAGAAAAGTTCAGGAACGCCTGGAGGACGATGAACGTTATTCCCGA CTTGAGAAGTTTGATCGGTTGGATATTTTTCAAGAGTACATTCGACACCTAGAGAAAGAA GAGGAAGAGCAGAAGCGGGTACAAAAGGATCAAGTGAGAAGACAAGAGAGGAAAAACCGT GATGGGTTTCGTAAAATGTTGGAAGAACATGTTGCTGATGGCACACTTAATGCAAGAACT CGGTGGCGTGATTACTGTGCACAGATAAAAGATTCACAGTCCTACTTGGCTGTAGCATCA AACACATCTGGCTCTACACCGAAAGAGTTATTTGATGACGTGATCGAGGAACTTGGCAAA CAGTATCAAGAAGACAAGATCCAAATTAAAGAAGTGGTGAAATCTGGAAAGATTCCTATG ACAACTTCATGGACATTAGAGGAATTCCAAACTGCTACTCTGGAGGATGATGCTCTTAAA GGAATATCAACCATCAACATCAAGCTTGTATATGACGATCAGCTTGAAAGGCTCAAGGAA AAAGAGCAAAAGGACGCTAAGAAGCGCCAGCGCTTGGGTGAAAATTTTTCAGATCTTTTG TATTCCATCAAGGAAATATCAGCTTCTTCAACATGGGATGATTCTAAACAGCTTTTCGAG GATAGCCAAGAGTTCAGGGCCTTGGACAGTGAGACTTATGCTAGAGAGCTTTTTGAAGAG TGCGTTGTCCACCTGAAAGAAAGGTTAAAAGAGAAAGAACGTTTGAGGGAGGAAGAAAAG GCAAAAAGAGAGAAAGAGCGTGAGGAGAAAGAGAAGAAGAAAGAGAAAGAAAGGAAGGAG AAAGAACGCAAAGAAAAAGAAAGAGACCACCGGGAGGAGAGAGAAAAGGAGAAAGGGAAG GATCGATCAAGGAGAGATGAAATGGAGTTTGATGGTGCTGATTTGAACACCCATGGTGCA AAAGATAAGAAAAGAGATAAAGATAAAGAAAAGAAACATAAGAGACGTCACCATGACACA GATGATGTAAGCTCTGAGAGGGATGATAAAGACGATGCTAAGAAGTCTCGGAGGCATAGC AGTGATCGCAAGAAATCTAGGAAGCATGCACATGGCTCAGATTCAGATAGTGAAAACCGG CACAAAAGACATAAAAAGGACCGAGATAGTAGTAGAAGAAATGGAGCACATGAGCTGGAA GATGGTGAACTTGGAGAGGATGGGGAGATCTATTAG

Peptide Sequence

PEP ID	Zm00001d044573_P067
PEP Infomation	pep chromosome:B73_RefGen_v4:3:232095138:232120800:1 gene:Zm00001d044573 transcript:Zm00001d044573_T067 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA-processing protein 40A
Sequence	MPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDK RYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKA ILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIK ASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNR DGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGK QYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKE KEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEE CVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGK DRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHS SDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY

Transcript Sequence

Transcript ID	Zm00001d044573_T067
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:232095138:232120800:1 gene:Zm00001d044573 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA-processing protein 40A
Sequence	GCAGAAACAACGATGAAAATTCATCTCTGACCACTGGGGCTGACGCAGAGGATGGTACAT CCGCTGAAGATTTGGTGGAGGCCAAAAAGACCATGCCAGTTGCAGGGAAGATTAATGTCA CTCCAGTGGAGGAGAAAACAAGTGAAGAAGAACCTGTAGTCTATGCCACTAAGATGGAAG CAAAAAATGCGTTCAAGTCCCTGCTTGAGTCGGTAAATGTGGAGTCTGATTGGACATGGG ATCAGACTATGAGAGTCATCATAAATGACAAAAGATATGGTGCTTTGAAAACTCTTGGAG AGAGAAAGCAAGCTTTCAATGAGTACTTGAACCAGCGCAAAAAGTTTGAAGCCGAAGAAA AACGTATCAAACAGAGGAAAGCACGTGATGATTTCCTTGCAATGTTGGAAGAAAGCAAGG AGCTTACATCATCAACAAGATGGAGCAAAGCAATACTTATGTTTGAAGATGATGAAAGAT TCAAAGCAGTTGAGCGTCCAAGGGAGCGTGAAGATTTATTTGAGAACTATCTTGTGGAAC TGCATAAGAAGGAAAAAGCCAAGGCTGCTGAAGAACACAAAAGATATGTAGCAGAGTACA GAGCTTTTCTAGAATCATGTGACTTCATCAAGGCAAGCACTCAGTGGAGAAAAGTTCAGG AACGCCTGGAGGACGATGAACGTTATTCCCGACTTGAGAAGTTTGATCGGTTGGATATTT TTCAAGAGTACATTCGACACCTAGAGAAAGAAGAGGAAGAGCAGAAGCGGGTACAAAAGG ATCAAGTGAGAAGACAAGAGAGGAAAAACCGTGATGGGTTTCGTAAAATGTTGGAAGAAC ATGTTGCTGATGGCACACTTAATGCAAGAACTCGGTGGCGTGATTACTGTGCACAGATAA AAGATTCACAGTCCTACTTGGCTGTAGCATCAAACACATCTGGCTCTACACCGAAAGAGT TATTTGATGACGTGATCGAGGAACTTGGCAAACAGTATCAAGAAGACAAGATCCAAATTA AAGAAGTGGTGAAATCTGGAAAGATTCCTATGACAACTTCATGGACATTAGAGGAATTCC AAACTGCTACTCTGGAGGATGATGCTCTTAAAGGAATATCAACCATCAACATCAAGCTTG TATATGACGATCAGCTTGAAAGGCTCAAGGAAAAAGAGCAAAAGGACGCTAAGAAGCGCC AGCGCTTGGGTGAAAATTTTTCAGATCTTTTGTATTCCATCAAGGAAATATCAGCTTCTT CAACATGGGATGATTCTAAACAGCTTTTCGAGGATAGCCAAGAGTTCAGGGCCTTGGACA GTGAGACTTATGCTAGAGAGCTTTTTGAAGAGTGCGTTGTCCACCTGAAAGAAAGGTTAA AAGAGAAAGAACGTTTGAGGGAGGAAGAAAAGGCAAAAAGAGAGAAAGAGCGTGAGGAGA AAGAGAAGAAGAAAGAGAAAGAAAGGAAGGAGAAAGAACGCAAAGAAAAAGAAAGAGACC ACCGGGAGGAGAGAGAAAAGGAGAAAGGGAAGGATCGATCAAGGAGAGATGAAATGGAGT TTGATGGTGCTGATTTGAACACCCATGGTGCAAAAGATAAGAAAAGAGATAAAGATAAAG AAAAGAAACATAAGAGACGTCACCATGACACAGATGATGTAAGCTCTGAGAGGGATGATA AAGACGATGCTAAGAAGTCTCGGAGGCATAGCAGTGATCGCAAGAAATCTAGGAAGCATG CACATGGCTCAGATTCAGATAGTGAAAACCGGCACAAAAGACATAAAAAGGACCGAGATA GTAGTAGAAGAAATGGAGCACATGAGCTGGAAGATGGTGAACTTGGAGAGGATGGGGAGA TCTATTAGTCTTTCTGTTTGCTACCGAGATTCTACTTGTAGCACTCATCTCCAGTCTTGT TACACATGGATTTATTGCCATCTCTTGCCTGTTGAGTTGCGCACTTGGGCTGAAGCCTAC CAGCTGGATTTTTGCTCTGCCGCACCTGTGATGCTACTGCTGGGGGGCAATGGATATAGC AATAACACCAGCTACTGCTGGGGAGCAATGGATGTAGCAATAACACCAGCCCATGCTTGA CACCTTTCTTTGGTCCTTCTGGCAGCTGACCAGGCTAAATTTTCATTTCCTTCAAAGTCC ATGGTGCTGTCTGTGCTGAGGTAACAGATTGCTCAGTTTGCAACGAGTTTCTTTGTGAGT GATGTGCTTTTGGGAGAGTATGGAGTGTTTGATTTGTCGCTCATGTCATGTTAAGGCTTG TTCATTATACTAGGATTTAGTTATCTATGGAAATTTGTCGAGGATTGCTGGGCTTGAAGA TTCAGCGTGTTTGTATTATGGTTTTCATTTACTAGCTTATCC