Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044552_T014
CDS Infomation

cds chromosome:B73_RefGen_v4:3:231537159:231545846:-1 gene:Zm00001d044552 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleavage and polyadenylation specificity factor subunit 2
Sequence

ATGGGGACTTCGGTGCAGGTGACGCCTCTCAGCGGGGCGTACGGGGAGGGCCCCCTGTGC
TACCTACTCGCCGTCGATGGTTTCCGCTTCCTCCTCGACTGCGGATGGACCGACCTCTGC
GATACCTCGCAACTTCAACCCCTCGCAAAGGTTGCACCAACTGTAGATGCTGTTCTTTTG
TCACATCCTGACATGATGCATCTAGGAGCTTTGCCTTACGCTATGAAACACCTTGGGCTG
TCTGCACCAGTTTATGCAACAGAACCCGTGTTTAGGCTTGGCCTTTTGACCATGTATGAC
CATTTCCTGTCTCGATGGCAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGAT
GCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATGATAAA
GGTGAAGGAGTTGTTATTGCTCCACATGTGGCTGGGCATCTTTTGGGGGGGACAGTTTGG
AAGATTACAAAAGATGGGGAGGATGTTGTGTATGCTGTTGACTTCAACCATCGGAAAGAG
AGGCATTTGAATGGCACCGTTCTTGGATCTTTCGTGCGGCCAGCTGTTCTGATAACTGAT
GCTTACAATGCTTTGAACAACCAAGGCTATAGAAAAAAGCAGGATCAAGATTTCATTGAA
TCATTAATTAAAGTTCTGGCAACTGGTGGAAGTGTGCTACTTCCTGTTGACACGGCTGGT
AGAGTGTTGGAACTTCTTTTGTTATTGGATATGTACTGGGATGAAAGGCGATTGCAGTAC
CCTATCTACTTCCTGACAAATGTGTCGACAAGTACCGTTGATTATGTCAAGAGTTTTCTT
GAATGGATGGGTGATCAAATTGCAAAATCTTTTGAAAGCAGTAGAGCCAATGCCTTCTTG
TTAAAAAAGGTCACGCTGATAATTAACAAAGAAGAGCTTGAGAAATTGGGAGATGCTCCA
AAGGTGGTTCTGGCATCCATGGCAAGTTTGGAGGTTGGCTTTTCTCATGACATATTTGTG
GAGATGGCAAATGAAGCAAGAAATCTAGTGCTCTTTACTGAGAAGGGACAGTTTGGGACA
CTGGCTCGAATGCTCCAAGTGGACCCACCCCCTAAAGCTTTAAAGGTCACTATGAGCAAG
AGGATTCCTTTGGTGGGTAATGAACTAAAGGCTTATGAAGAAGAGCAAGAACGGATAAAA
AAAGAGAAATCGCTAAAGGCTAGCCTTGTCAAAGAAGAGGAGCTAAAGGCTTCTCATGGA
TCAAACACAAAGGCTTCTGAGCCAATGGTCATTGATGCAAGCTCATCTCGAAAATCTGTG
AATGCTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTCCTTTA
ACCAGTGTTGCTCCAATGTTTCCCTTCTTTGAAAACACTGCTGAATGGGACGACTTTGGT
GAGGTCATCAACCCTGATGATTATATGATGAAACAAGAAGAAATGGATAATACTCTGATG
CTTGGCCCTGGAGATGGATTAGATGGTAGGATCGATGATGGCTCAGCACGCCTGCTTCTT
GATTCAACGCCCTCAAAAGTCATTTCCAACGAGATGACTGTTCAAGTGAAATGCTCATTG
GTTTATATGGACTTTGAAGGTCGCTCTGATGGGCGTTCTGTAAAATCAATTATTGCTCAC
GTGGCTCCACTGAAACTTATCCTGGTGCATGGATCAGCTGAAGCAACTGAACATTTGAAA
ATGCACTGCGCAAAGAATTTAGATTTGCATGTTTATGCTCCACAGATTGAGGAAACTATT
GATGTAACATCAGACTTATGTGCTTATAAGGTACAACTTTCGGAGAAGTTAATGAGTAAC
ATCATTTCTAAGAAGTTGGGTGAGCATGAAATTGCTTGGGTGGATGCAGAAGTTGGAAAA
GAAGATGAGAAGCTTATTTTGCTTCCCCCATCGTCAACACCACCACCCCATAAGCCTGTT
CTTGTGGGTGATCTAAAGTTGTCTGATTTTAAACAATTTTTGGAAAACAAAGGCTGGCAG
GTTGAATTTGCCGGAGGTGCTTTACGGTGTGGCGAATACATCATGGTGCGCAAAGTTGGT
GATTCTATCCTAAAGGGCAGCACAGGGTCCCAGCAGATCGTCATCGAGGGCCCCCTCTGC
GAGGACTATTACAAGATCAGGGAGCTTCTGTACTCGCAGTTCTACTTGCTGTGA

Peptide Sequence

PEP ID

Zm00001d044552_P014
PEP Infomation

pep chromosome:B73_RefGen_v4:3:231537159:231545846:-1 gene:Zm00001d044552 transcript:Zm00001d044552_T014 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleavage and polyadenylation specificity factor subunit 2
Sequence

MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL
SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD
AAFQNVVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE
RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIESLIKVLATGGSVLLPVDTAG
RVLELLLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFL
LKKVTLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQFGT
LARMLQVDPPPKALKVTMSKRIPLVGNELKAYEEEQERIKKEKSLKASLVKEEELKASHG
SNTKASEPMVIDASSSRKSVNASHFGGNNDILIDGFVPPLTSVAPMFPFFENTAEWDDFG
EVINPDDYMMKQEEMDNTLMLGPGDGLDGRIDDGSARLLLDSTPSKVISNEMTVQVKCSL
VYMDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLDLHVYAPQIEETI
DVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGKEDEKLILLPPSSTPPPHKPV
LVGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKVGDSILKGSTGSQQIVIEGPLC
EDYYKIRELLYSQFYLL

Transcript Sequence

Transcript ID

Zm00001d044552_T014
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:231537159:231545846:-1 gene:Zm00001d044552 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleavage and polyadenylation specificity factor subunit 2
Sequence

GCCCGCGCCTCCTTCCTCCGTCCTCCGGCTCGGCGGTCCGCCGCCCTCCTTCATCCTCCG
GCTGGAGGCCCTCCTCCACCCCCGCCTCGCGGCCCTACACTCTCGTTGGGTCGGCACCCG
TGCCTCCCATTCTCTCCTCTTCTCTCGCTCGAGCGCCGCGGCCTCTGCTCGCTCGGTCGA
GGCTGAAGGACGGGACAAAGCGCAGATTGACCACCGGGCGTCGGAACCGCCGCCGCTGCC
GCCGAAGGGGTTATAAGATCAGATGGGGACTTCGGTGCAGGTGACGCCTCTCAGCGGGGC
GTACGGGGAGGGCCCCCTGTGCTACCTACTCGCCGTCGATGGTTTCCGCTTCCTCCTCGA
CTGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAAGGTTGCACC
AACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCATCTAGGAGCTTTGCCTTA
CGCTATGAAACACCTTGGGCTGTCTGCACCAGTTTATGCAACAGAACCCGTGTTTAGGCT
TGGCCTTTTGACCATGTATGACCATTTCCTGTCTCGATGGCAAGTTTCAGACTTTGACTT
GTTTACTCTAGATGATGTTGATGCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACA
AAATTACCTTCTGAATGATAAAGGTGAAGGAGTTGTTATTGCTCCACATGTGGCTGGGCA
TCTTTTGGGGGGGACAGTTTGGAAGATTACAAAAGATGGGGAGGATGTTGTGTATGCTGT
TGACTTCAACCATCGGAAAGAGAGGCATTTGAATGGCACCGTTCTTGGATCTTTCGTGCG
GCCAGCTGTTCTGATAACTGATGCTTACAATGCTTTGAACAACCAAGGCTATAGAAAAAA
GCAGGATCAAGATTTCATTGAATCATTAATTAAAGTTCTGGCAACTGGTGGAAGTGTGCT
ACTTCCTGTTGACACGGCTGGTAGAGTGTTGGAACTTCTTTTGTTATTGGATATGTACTG
GGATGAAAGGCGATTGCAGTACCCTATCTACTTCCTGACAAATGTGTCGACAAGTACCGT
TGATTATGTCAAGAGTTTTCTTGAATGGATGGGTGATCAAATTGCAAAATCTTTTGAAAG
CAGTAGAGCCAATGCCTTCTTGTTAAAAAAGGTCACGCTGATAATTAACAAAGAAGAGCT
TGAGAAATTGGGAGATGCTCCAAAGGTGGTTCTGGCATCCATGGCAAGTTTGGAGGTTGG
CTTTTCTCATGACATATTTGTGGAGATGGCAAATGAAGCAAGAAATCTAGTGCTCTTTAC
TGAGAAGGGACAGTTTGGGACACTGGCTCGAATGCTCCAAGTGGACCCACCCCCTAAAGC
TTTAAAGGTCACTATGAGCAAGAGGATTCCTTTGGTGGGTAATGAACTAAAGGCTTATGA
AGAAGAGCAAGAACGGATAAAAAAAGAGAAATCGCTAAAGGCTAGCCTTGTCAAAGAAGA
GGAGCTAAAGGCTTCTCATGGATCAAACACAAAGGCTTCTGAGCCAATGGTCATTGATGC
AAGCTCATCTCGAAAATCTGTGAATGCTTCACATTTTGGTGGGAACAATGATATTCTCAT
AGATGGATTTGTCCCTCCTTTAACCAGTGTTGCTCCAATGTTTCCCTTCTTTGAAAACAC
TGCTGAATGGGACGACTTTGGTGAGGTCATCAACCCTGATGATTATATGATGAAACAAGA
AGAAATGGATAATACTCTGATGCTTGGCCCTGGAGATGGATTAGATGGTAGGATCGATGA
TGGCTCAGCACGCCTGCTTCTTGATTCAACGCCCTCAAAAGTCATTTCCAACGAGATGAC
TGTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGATGGGCGTTC
TGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTTATCCTGGTGCATGGATCAGC
TGAAGCAACTGAACATTTGAAAATGCACTGCGCAAAGAATTTAGATTTGCATGTTTATGC
TCCACAGATTGAGGAAACTATTGATGTAACATCAGACTTATGTGCTTATAAGGTACAACT
TTCGGAGAAGTTAATGAGTAACATCATTTCTAAGAAGTTGGGTGAGCATGAAATTGCTTG
GGTGGATGCAGAAGTTGGAAAAGAAGATGAGAAGCTTATTTTGCTTCCCCCATCGTCAAC
ACCACCACCCCATAAGCCTGTTCTTGTGGGTGATCTAAAGTTGTCTGATTTTAAACAATT
TTTGGAAAACAAAGGCTGGCAGGTTGAATTTGCCGGAGGTGCTTTACGGTGTGGCGAATA
CATCATGGTGCGCAAAGTTGGTGATTCTATCCTAAAGGGCAGCACAGGGTCCCAGCAGAT
CGTCATCGAGGGCCCCCTCTGCGAGGACTATTACAAGATCAGGGAGCTTCTGTACTCGCA
GTTCTACTTGCTGTGAGGCAACGTACGGCAAAGCTTAGGCTTTATTTACATTGGTTATAA
ATTATTAGATTAGATGTTGACTGTAAGACTATCCTGGTGTTTTCTGTTTTTACATTGTTT
GTTTCCCCTTTCACAAGCTTAGGCTTGTGTTGTCCGAAATTTGGCGTGGGATGACCGTGA
CAAAGTTTTGGCATCAGTTTC