Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044496_T013
CDS Infomation	cds chromosome:B73_RefGen_v4:3:229674420:229695525:-1 gene:Zm00001d044496 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGGAACTCTCGCCCTTGCCGATGCTCGCTGCCTCCCGCTTCCTGTCCCTGTCGCCGCTG CTGGCGCCAACATGCCCCCAGCGGACCGCTCCTTCAGTCCGCGTGGCCACGCAGACGCTG GAAGCGCCGGAGGCGCCCAAACCGCCGCGGCCGTCCCCCAGGCGCAGCGCCGTCGCTGAG GTCAAGGGGGCCCTTGACCCCATCGCCGCCCTCAACAGGTTTGAGGAGGTACTGCAGACA CAAGACTGCAACATAATTCTGCGCCACTGCGGGGACATTAGGCGTTGGGATGACCTCTCT AAGGTCTTTGAGTGGATGCAGGAGCGCGAGATGACCAACGCTGCATCTTATAGCAGCTAC TTCAAGTACCTTGGACTGAGCCGTGACCCTGCGAGGGTGCTTCGAGTGTACGGTGCCATC AAAGACCGAACATTGAGGGTCCATGTCTCCGTCTGTAATTCAGTTCTTGGGTGCTTGGTG AAGAATGGGAGGTTGGACAGCAGCTTCAAGCTCTATGACGAGATGATACGGGAAGGTCTA TCTCCTGATCCATTCACCTACAGCACCCTGTTAGCAGGGTGTATGAAGTTGAAGCAAGGT TATACCAAGGCAATGGGATTGATCAATGAGATGAAATCTCGTGGTCTTCAGATGGATATT GTAATATATGGCACTCTTCTGGCAATATGTGCATCTCATAACTACTGTGAGGAGGCTGAA GTATACTTTCAGAAAATGAAAGATGAAGGCCATAGTCCTAATCTGTTCCATTACAGCTCC CTGTTGAATGCATATTCAGAAAATTCTGATTATGGAAAAGCTGAGCTATTGATGAAAGAT CTGAGGTCCTCTGGATTAACACCAAATAAGGTTATGTTGACCACTTTGTTAAAGGTGTAT TCTAAAGGTGGTCTCTTTGAGAAGGCTAAGGGACTGCTAACTGAACTGGAAGCCTCAGGT TTTGCACAGGATGAGATGCCATACTGCATATTGATTGATGGCCTTGTCAAAGGTGGAAAG ATACAGGAAGCAAATATTCTATTTAACGAAATGAAAGAAAAAGGAGTCAAATCTGATGGT TATGCATTTAGCATCATGATTTCAGCATTGCACAGAGGTGGTCATCACCAAGAATCGAAA CAGCTTGCCAAAGAATTCGAGTCTGAGAATGCATCATATGATCTGGTTATGCTTAATACA TCACTGCGCACTTACTGCAGCACAAATGACATGGAGAGCGTAATGAGGATGCTAAAGAAA ATGGATGAATCAAACATATCACCTGATAACATTACATTTAATACCTTGATAAGGTACTTC TGCAATGCAAAGGTTTGTCACCTAGCATACAAAACAGTTGAAGATATGCATGCAAAGGGT CATCAATTAAATGAGGAGCTTTGTTCTCATGTAATGGTACAGCTAGGAAAGGCAGGTTTC CCTTCTGAAGCATTTTCTGTGTATAATATGTTGAGATATAGTAAAAGAACAGTTCACAAA TCTCTTCATGAGAAGGTCTTAGGCATCTTAGTTCCAGCAGAACTTCTCAAAGCTGCTTAT ATAGTTGTTAAGGACAATGCTGATCTGATATCTCCTTCTTCTTTGGAGAAGTTTGCTAAA TCGTTCATGGTCTCAGGCAATATAAATCTAATTAATGATGTTATGAAAGCCCTAAACCGC TCCGGGTGGCGTATCAGCCAGGACATCTTTGGGAGAGCAATTAAGAGATACATCCAAAAG CCTGATAAGAAACAGTTGCTGCTGTGCCTCTTGGACTGGATGATTGGACAAGGCTATTCT GTAGACTCGTCATCAAGGAACTTACTTTTGAAGAATGCACAACTTTTTGGCGAAAAACAA GTTATAGCAGAAATCCTTTCTAAGCAGCAGATAGCATCAAGGACTATTGGCCTAAGACAC AAAAAATGA

Peptide Sequence

PEP ID	Zm00001d044496_P013
PEP Infomation	pep chromosome:B73_RefGen_v4:3:229674420:229695525:-1 gene:Zm00001d044496 transcript:Zm00001d044496_T013 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	MELSPLPMLAASRFLSLSPLLAPTCPQRTAPSVRVATQTLEAPEAPKPPRPSPRRSAVAE VKGALDPIAALNRFEEVLQTQDCNIILRHCGDIRRWDDLSKVFEWMQEREMTNAASYSSY FKYLGLSRDPARVLRVYGAIKDRTLRVHVSVCNSVLGCLVKNGRLDSSFKLYDEMIREGL SPDPFTYSTLLAGCMKLKQGYTKAMGLINEMKSRGLQMDIVIYGTLLAICASHNYCEEAE VYFQKMKDEGHSPNLFHYSSLLNAYSENSDYGKAELLMKDLRSSGLTPNKVMLTTLLKVY SKGGLFEKAKGLLTELEASGFAQDEMPYCILIDGLVKGGKIQEANILFNEMKEKGVKSDG YAFSIMISALHRGGHHQESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESVMRMLKK MDESNISPDNITFNTLIRYFCNAKVCHLAYKTVEDMHAKGHQLNEELCSHVMVQLGKAGF PSEAFSVYNMLRYSKRTVHKSLHEKVLGILVPAELLKAAYIVVKDNADLISPSSLEKFAK SFMVSGNINLINDVMKALNRSGWRISQDIFGRAIKRYIQKPDKKQLLLCLLDWMIGQGYS VDSSSRNLLLKNAQLFGEKQVIAEILSKQQIASRTIGLRHKK

Transcript Sequence

Transcript ID	Zm00001d044496_T013
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:229674420:229695525:-1 gene:Zm00001d044496 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	AACGCAAACAGATAGCATCCCGCGTCGCCGCGATGGAACTCTCGCCCTTGCCGATGCTCG CTGCCTCCCGCTTCCTGTCCCTGTCGCCGCTGCTGGCGCCAACATGCCCCCAGCGGACCG CTCCTTCAGTCCGCGTGGCCACGCAGACGCTGGAAGCGCCGGAGGCGCCCAAACCGCCGC GGCCGTCCCCCAGGCGCAGCGCCGTCGCTGAGGTCAAGGGGGCCCTTGACCCCATCGCCG CCCTCAACAGGTTTGAGGAGGTACTGCAGACACAAGACTGCAACATAATTCTGCGCCACT GCGGGGACATTAGGCGTTGGGATGACCTCTCTAAGGTCTTTGAGTGGATGCAGGAGCGCG AGATGACCAACGCTGCATCTTATAGCAGCTACTTCAAGTACCTTGGACTGAGCCGTGACC CTGCGAGGGTGCTTCGAGTGTACGGTGCCATCAAAGACCGAACATTGAGGGTCCATGTCT CCGTCTGTAATTCAGTTCTTGGGTGCTTGGTGAAGAATGGGAGGTTGGACAGCAGCTTCA AGCTCTATGACGAGATGATACGGGAAGGTCTATCTCCTGATCCATTCACCTACAGCACCC TGTTAGCAGGGTGTATGAAGTTGAAGCAAGGTTATACCAAGGCAATGGGATTGATCAATG AGATGAAATCTCGTGGTCTTCAGATGGATATTGTAATATATGGCACTCTTCTGGCAATAT GTGCATCTCATAACTACTGTGAGGAGGCTGAAGTATACTTTCAGAAAATGAAAGATGAAG GCCATAGTCCTAATCTGTTCCATTACAGCTCCCTGTTGAATGCATATTCAGAAAATTCTG ATTATGGAAAAGCTGAGCTATTGATGAAAGATCTGAGGTCCTCTGGATTAACACCAAATA AGGTTATGTTGACCACTTTGTTAAAGGTGTATTCTAAAGGTGGTCTCTTTGAGAAGGCTA AGGGACTGCTAACTGAACTGGAAGCCTCAGGTTTTGCACAGGATGAGATGCCATACTGCA TATTGATTGATGGCCTTGTCAAAGGTGGAAAGATACAGGAAGCAAATATTCTATTTAACG AAATGAAAGAAAAAGGAGTCAAATCTGATGGTTATGCATTTAGCATCATGATTTCAGCAT TGCACAGAGGTGGTCATCACCAAGAATCGAAACAGCTTGCCAAAGAATTCGAGTCTGAGA ATGCATCATATGATCTGGTTATGCTTAATACATCACTGCGCACTTACTGCAGCACAAATG ACATGGAGAGCGTAATGAGGATGCTAAAGAAAATGGATGAATCAAACATATCACCTGATA ACATTACATTTAATACCTTGATAAGGTACTTCTGCAATGCAAAGGTTTGTCACCTAGCAT ACAAAACAGTTGAAGATATGCATGCAAAGGGTCATCAATTAAATGAGGAGCTTTGTTCTC ATGTAATGGTACAGCTAGGAAAGGCAGGTTTCCCTTCTGAAGCATTTTCTGTGTATAATA TGTTGAGATATAGTAAAAGAACAGTTCACAAATCTCTTCATGAGAAGGTCTTAGGCATCT TAGTTCCAGCAGAACTTCTCAAAGCTGCTTATATAGTTGTTAAGGACAATGCTGATCTGA TATCTCCTTCTTCTTTGGAGAAGTTTGCTAAATCGTTCATGGTCTCAGGCAATATAAATC TAATTAATGATGTTATGAAAGCCCTAAACCGCTCCGGGTGGCGTATCAGCCAGGACATCT TTGGGAGAGCAATTAAGAGATACATCCAAAAGCCTGATAAGAAACAGTTGCTGCTGTGCC TCTTGGACTGGATGATTGGACAAGGCTATTCTGTAGACTCGTCATCAAGGAACTTACTTT TGAAGAATGCACAACTTTTTGGCGAAAAACAAGTTATAGCAGAAATCCTTTCTAAGCAGC AGATAGCATCAAGGACTATTGGCCTAAGACACAAAAAATGATAAAGGAAAGATTTTGTAT ATGTAAATTGTTCATATACATCCAGGATATGCCTAGGCTGATTGTTTGAGGATCAATTTA TTGTGCTCTGAGGGGAATTTTCCAATGAGGCATGCTTGTTCCAGTAGCGGTACAGCTGGG AGTGGAGTATGACCATGCTTGCTATGATATGTGTGTTAGATTGTGTTGTCTGAAGGCTTA CAGTAAGTTTTTGATACATATGGACATACCCATACAGCTAAAGCAAAGACAATTTGATTT GATTTTAGAGGATTTTGCATGTAATTCAACATGGTTGAGGTCACTGTACCTAGAAAGCAG CATACAGATCTAATTTTGTTGACAATCGTACAAGGTATTATTACTTAATTACTTTGGTGA AAAGAGGTTGCTT