Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044488_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:229572437:229578470:1 gene:Zm00001d044488 gene_biotype:protein_coding transcript_biotype:protein_coding description:CTP synthase family protein
Sequence

ATGGCCTTTTTTTTTGCAAACCCCTCTTCTCTCTCCCAGTCTCCCCCAAACCGCCTTGCC
TCCGTTGCCCTCCCCACTCCCCTCTCACCTCCTAAAACCCCTCTTGCTCTCCCTTGCCCG
CGCGCACGAGCACGCGCATCGACACCTTCAGCTCGTGTGTCCGTGCGAGCGGGCGGTTTC
CTCGCCAAGAACTGTCGCGCGGGTCGGGGGATTGAGGAAGAGAGTGTCGGCGGCGGCGGC
GGCGACGACGACGGATTTTTCTGGCCCGAGATTCCTGGTCAAGGCAATATGAAGTACGTC
CTTGTCACCGGCGGGGTGGTGAGCGGCCTGGGCAAGGGCGTCACGGCCAGCAGCATCGGC
GTCGTCCTCAAGGCGTGCGGCTTCCGCATTACGTCCATTAAGATCGATCCTTACCTTAAC
ACCGATGCTGGGACTATGTCTCCATTCGAACATGGTGAAGTGTTTGTGCTGGATGATGGT
GGCGAGGTGGACTTGGATCTTGGTAATTACGAGAGGTTTCTGGACATTAAACTTACTCGG
GACAATAACATAACCACCGGAAAGATCTATCAGTCTGTAATTGACAAGGAGAGGAAAGGG
GAATACTTGGGAAAGACTGTCCAGGTTGTGCCACACATCACAAATGCCATACAGGAGTGG
ATTGAGCGTGTTGCTATGATACCAGTTGATGGCATGGAGGGACCTGCTGATGTCTGTGTG
ATAGAATTGGGGGGCACTATAGGTGATATTGAATCCATGCCATTTATAGAAGCTTTGGGT
CAGTTCTCTTATCGTGTTGGTCCTGGCAACTTCTGCCTGGTGCACGTCAGTCTAGTTCCA
GTTTTGAATGTTGTTGGTGAACAGAAAACAAAGCCAACCCAGCATAGTGTACGTGGTTTG
AGGGGACTCGGGCTCACTCCAAATATTTTAGCTTGCCGCAGTACTAAGGAATTAGAGGAT
AGTGTGAAGGAGAAACTCTCCCAGTTTTGCCATGTGCCGGCAGCAAATATTATCACTTTG
TATGATGTTTCCAATATCTGGCGCATTCCTTTGTTGCTTTGTGACCAAAAGGCTCATGAG
GCTATCCTTAAAGTTCTGAATCTGGAAAGGGTGGATAGCATTGCCCGAGAGCCGAAGTTA
GACGAATGGGTTGCAAGAGCTGCTATATTTGATACCCTTCATGACACTGTGAGGATTGCT
ATGGTTGGGAAGTACACTGGCTTATCAGATTCATACCTCTCTGTGTTGAAAGCCCTCTTG
CATGCATCTGTTGATTGCCGTAGGAAACTTGTTGTTGATTGGGTTGCTTCGACGGATCTT
GAGGATTCCACAGCAATTGAGGCACCCGATGCATATAAAACATCATGGAATTTATTGAAG
GGGGCAGATGGAATTTTGGTACCTGGTGGCTTTGGTGACAGAGGTGTTGAAGGGAAAATT
TTGGCTGCTAAGTATGCCCGGGAAAAGAATGTCCCATATCTTGGTATATGTCTTGGGATG
CAGATTGCTGTCGTGGAGTATGCCCGTCATGTTATGAATTTCACTGATGCCAACAGCACT
GAATTTGATCCAAATACCAAGACCCCTTGTGTTATTTTTATGCCTGAGGGTTCCAAAACA
CATATGGGTGCAACAATGCGCTTAGGATCAAGGAGGACATTTTTCAAGATTGCTGATTGC
AAGTCTTCTAAATTGTATGGCAATGTCACTTATGTTGATGAAAGGCACCGGCACAGATAT
GAGGTGAACCCTGATATGGTTCCAGAGTTCGAAAAAGCTGGGCTTCAGTTTGTTGGCAAA
GATGATACTGGAAGGAGGATGGAGATGATTGAAATACCCAACCACCGATATTTTGTTGGC
GCACAATTCCATCCTGAGTTCAAGTCAAGACCTTCAAAACCTTCTCCCCTATTTGTGGGA
CTAATTGCAGCTGCATCTGGGCAGTTGGATAGGGTGCTGCAAGACCGCTGCAATGGTCAT
GTTGGTTCAGCTAAACATGTTCTGAGCAATGGCTCATATACATCCGCAGTACACCAAAAT
GGGAACCCAAAGAAGCTCACCAATGGTCTCTCAAACGGAACATACTATGCCAATGGCAAT
GGTGTGCATGCTTAG

Peptide Sequence

PEP ID

Zm00001d044488_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:229572437:229578470:1 gene:Zm00001d044488 transcript:Zm00001d044488_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:CTP synthase family protein
Sequence

MAFFFANPSSLSQSPPNRLASVALPTPLSPPKTPLALPCPRARARASTPSARVSVRAGGF
LAKNCRAGRGIEEESVGGGGGDDDGFFWPEIPGQGNMKYVLVTGGVVSGLGKGVTASSIG
VVLKACGFRITSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTR
DNNITTGKIYQSVIDKERKGEYLGKTVQVVPHITNAIQEWIERVAMIPVDGMEGPADVCV
IELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGL
RGLGLTPNILACRSTKELEDSVKEKLSQFCHVPAANIITLYDVSNIWRIPLLLCDQKAHE
AILKVLNLERVDSIAREPKLDEWVARAAIFDTLHDTVRIAMVGKYTGLSDSYLSVLKALL
HASVDCRRKLVVDWVASTDLEDSTAIEAPDAYKTSWNLLKGADGILVPGGFGDRGVEGKI
LAAKYAREKNVPYLGICLGMQIAVVEYARHVMNFTDANSTEFDPNTKTPCVIFMPEGSKT
HMGATMRLGSRRTFFKIADCKSSKLYGNVTYVDERHRHRYEVNPDMVPEFEKAGLQFVGK
DDTGRRMEMIEIPNHRYFVGAQFHPEFKSRPSKPSPLFVGLIAAASGQLDRVLQDRCNGH
VGSAKHVLSNGSYTSAVHQNGNPKKLTNGLSNGTYYANGNGVHA

Transcript Sequence

Transcript ID

Zm00001d044488_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:229572437:229578470:1 gene:Zm00001d044488 gene_biotype:protein_coding transcript_biotype:protein_coding description:CTP synthase family protein
Sequence

GAGTTACTAAATTAGCCCTTAATTAGTTGTTTAACTAATATCTTAGAGATGCTATAAATG
GCCTTTTTTTTTGCAAACCCCTCTTCTCTCTCCCAGTCTCCCCCAAACCGCCTTGCCTCC
GTTGCCCTCCCCACTCCCCTCTCACCTCCTAAAACCCCTCTTGCTCTCCCTTGCCCGCGC
GCACGAGCACGCGCATCGACACCTTCAGCTCGTGTGTCCGTGCGAGCGGGCGGTTTCCTC
GCCAAGAACTGTCGCGCGGGTCGGGGGATTGAGGAAGAGAGTGTCGGCGGCGGCGGCGGC
GACGACGACGGATTTTTCTGGCCCGAGATTCCTGGTCAAGGCAATATGAAGTACGTCCTT
GTCACCGGCGGGGTGGTGAGCGGCCTGGGCAAGGGCGTCACGGCCAGCAGCATCGGCGTC
GTCCTCAAGGCGTGCGGCTTCCGCATTACGTCCATTAAGATCGATCCTTACCTTAACACC
GATGCTGGGACTATGTCTCCATTCGAACATGGTGAAGTGTTTGTGCTGGATGATGGTGGC
GAGGTGGACTTGGATCTTGGTAATTACGAGAGGTTTCTGGACATTAAACTTACTCGGGAC
AATAACATAACCACCGGAAAGATCTATCAGTCTGTAATTGACAAGGAGAGGAAAGGGGAA
TACTTGGGAAAGACTGTCCAGGTTGTGCCACACATCACAAATGCCATACAGGAGTGGATT
GAGCGTGTTGCTATGATACCAGTTGATGGCATGGAGGGACCTGCTGATGTCTGTGTGATA
GAATTGGGGGGCACTATAGGTGATATTGAATCCATGCCATTTATAGAAGCTTTGGGTCAG
TTCTCTTATCGTGTTGGTCCTGGCAACTTCTGCCTGGTGCACGTCAGTCTAGTTCCAGTT
TTGAATGTTGTTGGTGAACAGAAAACAAAGCCAACCCAGCATAGTGTACGTGGTTTGAGG
GGACTCGGGCTCACTCCAAATATTTTAGCTTGCCGCAGTACTAAGGAATTAGAGGATAGT
GTGAAGGAGAAACTCTCCCAGTTTTGCCATGTGCCGGCAGCAAATATTATCACTTTGTAT
GATGTTTCCAATATCTGGCGCATTCCTTTGTTGCTTTGTGACCAAAAGGCTCATGAGGCT
ATCCTTAAAGTTCTGAATCTGGAAAGGGTGGATAGCATTGCCCGAGAGCCGAAGTTAGAC
GAATGGGTTGCAAGAGCTGCTATATTTGATACCCTTCATGACACTGTGAGGATTGCTATG
GTTGGGAAGTACACTGGCTTATCAGATTCATACCTCTCTGTGTTGAAAGCCCTCTTGCAT
GCATCTGTTGATTGCCGTAGGAAACTTGTTGTTGATTGGGTTGCTTCGACGGATCTTGAG
GATTCCACAGCAATTGAGGCACCCGATGCATATAAAACATCATGGAATTTATTGAAGGGG
GCAGATGGAATTTTGGTACCTGGTGGCTTTGGTGACAGAGGTGTTGAAGGGAAAATTTTG
GCTGCTAAGTATGCCCGGGAAAAGAATGTCCCATATCTTGGTATATGTCTTGGGATGCAG
ATTGCTGTCGTGGAGTATGCCCGTCATGTTATGAATTTCACTGATGCCAACAGCACTGAA
TTTGATCCAAATACCAAGACCCCTTGTGTTATTTTTATGCCTGAGGGTTCCAAAACACAT
ATGGGTGCAACAATGCGCTTAGGATCAAGGAGGACATTTTTCAAGATTGCTGATTGCAAG
TCTTCTAAATTGTATGGCAATGTCACTTATGTTGATGAAAGGCACCGGCACAGATATGAG
GTGAACCCTGATATGGTTCCAGAGTTCGAAAAAGCTGGGCTTCAGTTTGTTGGCAAAGAT
GATACTGGAAGGAGGATGGAGATGATTGAAATACCCAACCACCGATATTTTGTTGGCGCA
CAATTCCATCCTGAGTTCAAGTCAAGACCTTCAAAACCTTCTCCCCTATTTGTGGGACTA
ATTGCAGCTGCATCTGGGCAGTTGGATAGGGTGCTGCAAGACCGCTGCAATGGTCATGTT
GGTTCAGCTAAACATGTTCTGAGCAATGGCTCATATACATCCGCAGTACACCAAAATGGG
AACCCAAAGAAGCTCACCAATGGTCTCTCAAACGGAACATACTATGCCAATGGCAATGGT
GTGCATGCTTAGACCATCAGATGGATGGATCAAGGATTTTGCAACTCTTTACTTCAATTA
TGCGGTTCCTAATGCATCAGTTTTGTCCGTTCGAGGAAGAAAAAGTTCTTGCGCTCGATG
CAGACTGTCTGCTGGGAATAGTGCTCGTTCGGTGGTTTTTAGTTAAAGAACTAAGCTGGA
TCTCTTTGGAAGGCACGAGACTGGTTTCTGTGTTCGTCTCTACCCTATTGTGTAAGCTAA
AGGAGCAGATTTGGGACGGAAGAGTTTACAAGTTGTATATCCTCAAAGAAAAGCTGAATA
TTTTTATTAACTTAAATTAGGTCTTCAGTGAGGTCGAGAGCTGATGCTTAAAAGTGGGCA
GCAGTGCAAGTGCAAGAGAGAGTATTTCGAAATCAGGCAACTCTGTATTTTGATTTTGGA
CATTTTTTTTGTTTCTTGTGCGCAAATAAGTTGATGCACTGTTGCATGATCATATATCAG
TTTTGACTTT