Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044458_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:228692766:228695429:-1 gene:Zm00001d044458 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGCGCCCGACACGGCTCCTCGCCGCCGCCTCCTCAACGTTCCGACGGCGCCGCCTTTAC
ACTGCCGCCGCAGTCTCCACCGTGGCACCTTCTTCTGCGGCCCCGCCACCGCAGGGCGCC
GTCCAGCCCCTCTCCACCCAATTCGCTAGACCATCCCCCGCCCGTGGCCACGGCGTCGCC
GATGACCTCGCTTCCTCCCTCCGCGCACTCCTCGCCTCCTCGCCCACCGTCCAGCACGCC
TTCCATCTGCTCCGTTCCGCTGCGCTGGATACGCGCCTCCCGCCGAACGAGCTCGTCGAC
GCCGTCCTCTCCACCGTGGACCCTGGCTCGCCGGCCGCGGTTACTCTCCTCAGCCACGTC
CTCACCTGCCTCTCCCGTGCTGCCAGCGACTGCGCGGCCGCCGCGGCCGCATACTCTCGC
ATGGTCACGAGGGGCGTTGTCCCGGACGCCAAGTCTCGCACCGACCTGCTCGTCACCACG
GCGCTGGGCGCGTCGGCTGCGGATGCGCTAACGCTGTTCGACGAGATGCGGGGCAAGGGG
TGCTACGCGGATGCGAAGATGTACGACGTCGTGATACGGGCCTGCGTCAGGGGAGGGATG
CACTGTGATGCCGTCAGGCTGTTTGATGAAATGGCTGGTGCCGGGGTCAAGCCCGACGAG
CGCGTTTATGCCATCACAATCTCAGGTTTGTGCAAGCTACGCGATGCAGATCGGGCACTC
CAGGTGTTGGGGAAGATGAGGGAGGCAGGGTTCGAGCCGTGGGAGTTAACGTACAGTTCT
GTGGTGGATGTGCTTGTGAAGGTGAGGAGGATGGATGAGGCATTGCGGCTGAAGGATCAG
ATGCTGCTGGCTACGGGAAAGAAGATGGATGTGGTTCTTGCGACGATGTTGATGCACGGG
TATTGCTTGAATGGAGAAGTTGGGAAGGCATTGGATTTGTTTGATGAGGTTGTCAGTGAT
GGTGTGACACCGACCAATGTGACATATGGGGTGCTAATCAAAGGTTGTGATGCAGAGGGG
ATGACAGATGAGACATATAAGCTATGCCGCCAGATGATAGAGCAGGGATTGTTACCGAGC
ACATATGAGTTCAATTTGGTGATCAAAGGCCTCTTGAGAGACAAACGGTGGAAGGATGCC
ATTGGCTTACTTAAACTTGTGGTAGATACTGGGGTACCAGATGTCTTCACTTACGGCTGT
CTAATTCATTGGCTCTGCAAGCATCAAAAACTCCACGAGGCAGTCAACTTATGGGATAAG
ATGAAGGAAGCAGGAGTCAAACCTTCTATTGTGACATACCACAGCCTACTGCTGGGGTAC
TGTGAGAAAGGGCGCATGGATGAAGCACTCAAGTTATACTCTGAGATGCCTGATAAAGGA
TTCCCGCCTAATGAGGTCACTTACACAACTCTGATGAAAGGGTACATCAAGAAGAAAGCT
TTTGACAATGCCTACGCCCTTCTTAATGAAATGCGTCAGAATGGAGTTTCTTGCGGCGAT
TATACGTATAATATTCTCATAAATGGACTTTACATGGTCAATCGTGTTTGTGAAGTTGAT
GAAATGTTGAAAAGATTTTTGAGTGAAGGTTTTGTTCCGACCACAATGACATACAATAGT
ATCATTAATGGATTTGTGAAAGCTGGTATGATGGGCTCTGCATTCGGTATGTATCGGCAG
ATGCGCAAGAAAGTGAAGCTGCTCATTTACGTGAGGCGCGATGGCATTCAACCTGACATT
GCTGCATACAACGCTTTCATAGATACGTTTTGCAAACAGGGGAATATGTCTCGTGCACTC
CATTTTTTGGTTCTTCTGTTGAAAGATGGTTTAACACCAGATGTCACTGTCTACAATAGT
TTTGTTACAGGGTACAAGAATTTGAAAATGATGGCAGAAGCTTCAAAGTTCTATTATAGC
ATGATCAAACAGAGAGTTGTTGCTGATACAGAAATCTATACAACCTTAATTGATGGGTTC
TCAAAAGTTGGCAATGTGGCCTTTGCTTTGGAACTGTACTCAGAGATGATGGCCAATCAC
GTTATTCCTGATGATAAAACTTTCACAGCACTAACCCACGGTCTTTGCCGAAGTGGAGAT
ATTGATGGTGCTAAGAGGTTATTGGATGATATGAGAAGATTAGATGTGTCTCCAAATATT
GTTACTTATAACATGCTGATAAATGCATGCGTCCGTGATGGTAAGCTGCAAGAGGCATTC
CAACTGCATGATGAGATGCTCAGCAGTGGAGTCGTGCCTGATGATACTACATATGACATA
CTCCCTCGGACCAATAATAGTTGA

Peptide Sequence

PEP ID

Zm00001d044458_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:228692766:228695429:-1 gene:Zm00001d044458 transcript:Zm00001d044458_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

MRPTRLLAAASSTFRRRRLYTAAAVSTVAPSSAAPPPQGAVQPLSTQFARPSPARGHGVA
DDLASSLRALLASSPTVQHAFHLLRSAALDTRLPPNELVDAVLSTVDPGSPAAVTLLSHV
LTCLSRAASDCAAAAAAYSRMVTRGVVPDAKSRTDLLVTTALGASAADALTLFDEMRGKG
CYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRAL
QVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHG
YCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQGLLPS
TYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDK
MKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKA
FDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNS
IINGFVKAGMMGSAFGMYRQMRKKVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRAL
HFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGF
SKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNI
VTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRTNNS

Transcript Sequence

Transcript ID

Zm00001d044458_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:228692766:228695429:-1 gene:Zm00001d044458 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATCAAGCCCCTGCGGCGCCACCATGCGCCCGACACGGCTCCTCGCCGCCGCCTCCTCAAC
GTTCCGACGGCGCCGCCTTTACACTGCCGCCGCAGTCTCCACCGTGGCACCTTCTTCTGC
GGCCCCGCCACCGCAGGGCGCCGTCCAGCCCCTCTCCACCCAATTCGCTAGACCATCCCC
CGCCCGTGGCCACGGCGTCGCCGATGACCTCGCTTCCTCCCTCCGCGCACTCCTCGCCTC
CTCGCCCACCGTCCAGCACGCCTTCCATCTGCTCCGTTCCGCTGCGCTGGATACGCGCCT
CCCGCCGAACGAGCTCGTCGACGCCGTCCTCTCCACCGTGGACCCTGGCTCGCCGGCCGC
GGTTACTCTCCTCAGCCACGTCCTCACCTGCCTCTCCCGTGCTGCCAGCGACTGCGCGGC
CGCCGCGGCCGCATACTCTCGCATGGTCACGAGGGGCGTTGTCCCGGACGCCAAGTCTCG
CACCGACCTGCTCGTCACCACGGCGCTGGGCGCGTCGGCTGCGGATGCGCTAACGCTGTT
CGACGAGATGCGGGGCAAGGGGTGCTACGCGGATGCGAAGATGTACGACGTCGTGATACG
GGCCTGCGTCAGGGGAGGGATGCACTGTGATGCCGTCAGGCTGTTTGATGAAATGGCTGG
TGCCGGGGTCAAGCCCGACGAGCGCGTTTATGCCATCACAATCTCAGGTTTGTGCAAGCT
ACGCGATGCAGATCGGGCACTCCAGGTGTTGGGGAAGATGAGGGAGGCAGGGTTCGAGCC
GTGGGAGTTAACGTACAGTTCTGTGGTGGATGTGCTTGTGAAGGTGAGGAGGATGGATGA
GGCATTGCGGCTGAAGGATCAGATGCTGCTGGCTACGGGAAAGAAGATGGATGTGGTTCT
TGCGACGATGTTGATGCACGGGTATTGCTTGAATGGAGAAGTTGGGAAGGCATTGGATTT
GTTTGATGAGGTTGTCAGTGATGGTGTGACACCGACCAATGTGACATATGGGGTGCTAAT
CAAAGGTTGTGATGCAGAGGGGATGACAGATGAGACATATAAGCTATGCCGCCAGATGAT
AGAGCAGGGATTGTTACCGAGCACATATGAGTTCAATTTGGTGATCAAAGGCCTCTTGAG
AGACAAACGGTGGAAGGATGCCATTGGCTTACTTAAACTTGTGGTAGATACTGGGGTACC
AGATGTCTTCACTTACGGCTGTCTAATTCATTGGCTCTGCAAGCATCAAAAACTCCACGA
GGCAGTCAACTTATGGGATAAGATGAAGGAAGCAGGAGTCAAACCTTCTATTGTGACATA
CCACAGCCTACTGCTGGGGTACTGTGAGAAAGGGCGCATGGATGAAGCACTCAAGTTATA
CTCTGAGATGCCTGATAAAGGATTCCCGCCTAATGAGGTCACTTACACAACTCTGATGAA
AGGGTACATCAAGAAGAAAGCTTTTGACAATGCCTACGCCCTTCTTAATGAAATGCGTCA
GAATGGAGTTTCTTGCGGCGATTATACGTATAATATTCTCATAAATGGACTTTACATGGT
CAATCGTGTTTGTGAAGTTGATGAAATGTTGAAAAGATTTTTGAGTGAAGGTTTTGTTCC
GACCACAATGACATACAATAGTATCATTAATGGATTTGTGAAAGCTGGTATGATGGGCTC
TGCATTCGGTATGTATCGGCAGATGCGCAAGAAAGTGAAGCTGCTCATTTACGTGAGGCG
CGATGGCATTCAACCTGACATTGCTGCATACAACGCTTTCATAGATACGTTTTGCAAACA
GGGGAATATGTCTCGTGCACTCCATTTTTTGGTTCTTCTGTTGAAAGATGGTTTAACACC
AGATGTCACTGTCTACAATAGTTTTGTTACAGGGTACAAGAATTTGAAAATGATGGCAGA
AGCTTCAAAGTTCTATTATAGCATGATCAAACAGAGAGTTGTTGCTGATACAGAAATCTA
TACAACCTTAATTGATGGGTTCTCAAAAGTTGGCAATGTGGCCTTTGCTTTGGAACTGTA
CTCAGAGATGATGGCCAATCACGTTATTCCTGATGATAAAACTTTCACAGCACTAACCCA
CGGTCTTTGCCGAAGTGGAGATATTGATGGTGCTAAGAGGTTATTGGATGATATGAGAAG
ATTAGATGTGTCTCCAAATATTGTTACTTATAACATGCTGATAAATGCATGCGTCCGTGA
TGGTAAGCTGCAAGAGGCATTCCAACTGCATGATGAGATGCTCAGCAGTGGAGTCGTGCC
TGATGATACTACATATGACATACTCCCTCGGACCAATAATAGTTGATTTTCCACCTGCCA
GGATTGCTTGCTGCTTGTTCAAGCCTCCAGTCTGACACAGTGTATTACCAACCAGAGGGA
ATACGAGTTAGCTTGAAACTTTTGGAAGCAAGTCCTGCAGATGCTGAAAATCATGTTTCA
ATTCTGCCAGTAAAGTATGAAGAACCTTAACATGCGATTCAGCAGATTGAAATTTAGGAA
ACTTGCACTGTAAATGAAGTGAACTCCTTGTCAGTTATAATTTTTCCTTTTCAATATATC
TCTACCCCT