Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044457_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:228664058:228666721:-1 gene:Zm00001d044457 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGCGCCCGACACGGCTCCTCGCCGCCGCCTCCTCAACGTTCCGACGGCGCCGCCTTTAC
ACTGCCGCCGCAGTCTCCACCGTGGCACCTTCTTCTGCGGCCCCGCCACCGCAGAGCGCC
GTCCAGCCCCTCTCCACCCAATTCGCTAGACCATCCCCCGCCCGTGGCCACGGCGTCGCC
GATGACCTCGCTTCCTCCCTCCGCGCACTCCTCGCCTCCTCGCCCACCGTCCAGCACGCC
TTCCATCTGCTCCGTTCCGCTGCGCTGGATACGCGCCTCCCGCCGAACGAGCTCGTCGAC
GCCGTCCTCTCCACCGTGGACGCTGGCTCGCCGGCCGCGGTTACTCTCCTCAGCCACGTC
CTCACCTGCCTCTCCCGCGCTGCCAGCGACTGCGCGGCCGCCGCGGCCGCATACTCTCGC
ATGGTCACGAGGGGCGTTGTCCCGGACGCCAAGTCTCGCACCGACCTGCTAGTCACCACG
GCGCGGGGCGCGTCGGCTGCGGATGCGCTAACGCTGTTCGACGAGATGCGGGGCAAGGGA
TGCTACGCGGATGCGAAGATGTACGACGTCGTGATACGGGCCTGCGTCAGGGGAGGGATG
CACTGTGATGCCGTCAGGCTGTTTGATGAAATGGCTGGTGCCGGGGTCAAGCCCGACGAG
CGCGTTTATGCCATCACAATCTCAGGTTTGTGCAAGCTACGCGATGCAGATCGGGCACTC
CAGGTGTTGGGGAAGATGAGGGAGGCAGGGTTCGAGCCGTGGGAGTTAACGTACAGTTCT
GTGGTGGATGTGCTTGTGAAGGTGGGGAGGATGGATGAGGCATTGAGGCTGAAGGATCAG
ATGCTGCTGGCTACGGGAAAGAAGATGGATGTGGTTCTCGCGACGATGTTGATGCACGGG
TATTGCTTGCATGGAGAAGTTGGGAAGGCATTGGATTTGTTTGATGAGGTTGTCAGTGAT
GGTGTGACACCGACCAATGTGACATATGGGGTGCTAATCAAAGGTTGTGATGCAGAGGGG
ATGTCAGATGAGACATATAAGCTATGCCGCCAGATGATAGAGCAGGGATTGTTACTGAGC
ACATATGAGTTCAATTTGGTGATCAAAGGCCTCTTGAGAGACAAACGGTGGAAGGATGCC
ATTGGCTTACTTGAACTTGTGGTAGATACTGGGGTACCAGATGTCTTCACTTACGGCTGT
CTAATTCATTGGCTCTGCAAGCATCAAAAACTCCACGAGGCAGTCAACTTATGGGATAAG
ATGAAGGAAGCAGGAGTCAAACCTTCTATTGTGACATACCACAGCCTACTGCTGGGGTAC
TGTGAGAAAGGGCGCATGGATGAAGCACTCAAGTTATACTCTGAGATGCCTGATAAAGGA
TTCCCGCCTAATGAGGTCACTTACACAACTCTGATGAAAGGGTACATCAAGAAGAAAGCT
TTTGACAATGCCTACGCCCTTCTTAATGAAATGCGTCAGAATGGAGTTTCTTGCGGCGAT
TATACGTATAATATTCTCATAAATGGACTTTACATGGTCAATCGTGTTTGTGAAGTTGAT
GAAATGTTGAAAAGATTTTTGAGTGAAGGTTTTGTTCCGACCACAATGACATACAATAGT
ATCATTAATGGATTTGTGAAAGCTGGTATGATGGGCTCTGCATTCGGTATGTATCGGCAG
ATGCGCAAGAAAGTGAAGCTGCTCATTTACGTGAGGCGCGATGGCATTCAACCTGACATT
GCTGCATACAACGCTTTCATAGATACGTTTTGCAAACAGGGGAATATGTCTCGTGCACTC
CATTTTTTGGTTCTTCTGTTGAAAGATGGTTTAACACCAGATGTCACTGTCTACAATAGT
TTTGTTACAGGGTACAAGAATTTGAAAATGATGGCAGAAGCTTCAAAGTTCTATTATAGC
ATGATCAAACAGAGAGTTGTTGCTGATACAGAAATCTATACAACCTTAATTGATGGGTTC
TCAAAAGTTGGCAATGTGGCCTTTGCTTTGGAACTGTACTCAGAGATGATGGCCAATCAC
GTTATTCCTGATGATAAAACTTTCACAGCACTAACCCACGGTCTTTGCCGAAGTGGAGAT
ATTGATGGTGCTAAGAGGTTATTGGATGATATGAGAAGATTAGATGTGTCTCCAAATATT
GTTACTTATAACATGCTGATAAATGCATGCGTCCGTGATGGTAAGCTGCAAGAGGCATTC
CAACTGCATGATGAGATGCTCAGCAGTGGAGTCGTGCCTGATGATACTACATATGACATA
CTCCCTCGGACCAATAATAGTTGA

Peptide Sequence

PEP ID

Zm00001d044457_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:228664058:228666721:-1 gene:Zm00001d044457 transcript:Zm00001d044457_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

MRPTRLLAAASSTFRRRRLYTAAAVSTVAPSSAAPPPQSAVQPLSTQFARPSPARGHGVA
DDLASSLRALLASSPTVQHAFHLLRSAALDTRLPPNELVDAVLSTVDAGSPAAVTLLSHV
LTCLSRAASDCAAAAAAYSRMVTRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKG
CYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRAL
QVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHG
YCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLS
TYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDK
MKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKA
FDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNS
IINGFVKAGMMGSAFGMYRQMRKKVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRAL
HFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGF
SKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNI
VTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRTNNS

Transcript Sequence

Transcript ID

Zm00001d044457_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:228664058:228666721:-1 gene:Zm00001d044457 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATCAAGCCCCTGCGGCGCCACTATGCGCCCGACACGGCTCCTCGCCGCCGCCTCCTCAAC
GTTCCGACGGCGCCGCCTTTACACTGCCGCCGCAGTCTCCACCGTGGCACCTTCTTCTGC
GGCCCCGCCACCGCAGAGCGCCGTCCAGCCCCTCTCCACCCAATTCGCTAGACCATCCCC
CGCCCGTGGCCACGGCGTCGCCGATGACCTCGCTTCCTCCCTCCGCGCACTCCTCGCCTC
CTCGCCCACCGTCCAGCACGCCTTCCATCTGCTCCGTTCCGCTGCGCTGGATACGCGCCT
CCCGCCGAACGAGCTCGTCGACGCCGTCCTCTCCACCGTGGACGCTGGCTCGCCGGCCGC
GGTTACTCTCCTCAGCCACGTCCTCACCTGCCTCTCCCGCGCTGCCAGCGACTGCGCGGC
CGCCGCGGCCGCATACTCTCGCATGGTCACGAGGGGCGTTGTCCCGGACGCCAAGTCTCG
CACCGACCTGCTAGTCACCACGGCGCGGGGCGCGTCGGCTGCGGATGCGCTAACGCTGTT
CGACGAGATGCGGGGCAAGGGATGCTACGCGGATGCGAAGATGTACGACGTCGTGATACG
GGCCTGCGTCAGGGGAGGGATGCACTGTGATGCCGTCAGGCTGTTTGATGAAATGGCTGG
TGCCGGGGTCAAGCCCGACGAGCGCGTTTATGCCATCACAATCTCAGGTTTGTGCAAGCT
ACGCGATGCAGATCGGGCACTCCAGGTGTTGGGGAAGATGAGGGAGGCAGGGTTCGAGCC
GTGGGAGTTAACGTACAGTTCTGTGGTGGATGTGCTTGTGAAGGTGGGGAGGATGGATGA
GGCATTGAGGCTGAAGGATCAGATGCTGCTGGCTACGGGAAAGAAGATGGATGTGGTTCT
CGCGACGATGTTGATGCACGGGTATTGCTTGCATGGAGAAGTTGGGAAGGCATTGGATTT
GTTTGATGAGGTTGTCAGTGATGGTGTGACACCGACCAATGTGACATATGGGGTGCTAAT
CAAAGGTTGTGATGCAGAGGGGATGTCAGATGAGACATATAAGCTATGCCGCCAGATGAT
AGAGCAGGGATTGTTACTGAGCACATATGAGTTCAATTTGGTGATCAAAGGCCTCTTGAG
AGACAAACGGTGGAAGGATGCCATTGGCTTACTTGAACTTGTGGTAGATACTGGGGTACC
AGATGTCTTCACTTACGGCTGTCTAATTCATTGGCTCTGCAAGCATCAAAAACTCCACGA
GGCAGTCAACTTATGGGATAAGATGAAGGAAGCAGGAGTCAAACCTTCTATTGTGACATA
CCACAGCCTACTGCTGGGGTACTGTGAGAAAGGGCGCATGGATGAAGCACTCAAGTTATA
CTCTGAGATGCCTGATAAAGGATTCCCGCCTAATGAGGTCACTTACACAACTCTGATGAA
AGGGTACATCAAGAAGAAAGCTTTTGACAATGCCTACGCCCTTCTTAATGAAATGCGTCA
GAATGGAGTTTCTTGCGGCGATTATACGTATAATATTCTCATAAATGGACTTTACATGGT
CAATCGTGTTTGTGAAGTTGATGAAATGTTGAAAAGATTTTTGAGTGAAGGTTTTGTTCC
GACCACAATGACATACAATAGTATCATTAATGGATTTGTGAAAGCTGGTATGATGGGCTC
TGCATTCGGTATGTATCGGCAGATGCGCAAGAAAGTGAAGCTGCTCATTTACGTGAGGCG
CGATGGCATTCAACCTGACATTGCTGCATACAACGCTTTCATAGATACGTTTTGCAAACA
GGGGAATATGTCTCGTGCACTCCATTTTTTGGTTCTTCTGTTGAAAGATGGTTTAACACC
AGATGTCACTGTCTACAATAGTTTTGTTACAGGGTACAAGAATTTGAAAATGATGGCAGA
AGCTTCAAAGTTCTATTATAGCATGATCAAACAGAGAGTTGTTGCTGATACAGAAATCTA
TACAACCTTAATTGATGGGTTCTCAAAAGTTGGCAATGTGGCCTTTGCTTTGGAACTGTA
CTCAGAGATGATGGCCAATCACGTTATTCCTGATGATAAAACTTTCACAGCACTAACCCA
CGGTCTTTGCCGAAGTGGAGATATTGATGGTGCTAAGAGGTTATTGGATGATATGAGAAG
ATTAGATGTGTCTCCAAATATTGTTACTTATAACATGCTGATAAATGCATGCGTCCGTGA
TGGTAAGCTGCAAGAGGCATTCCAACTGCATGATGAGATGCTCAGCAGTGGAGTCGTGCC
TGATGATACTACATATGACATACTCCCTCGGACCAATAATAGTTGATTTTCCACCTGCCA
GGATTGCTTGCTGCTTGTTCAAGCCTCCAGTCTGACACAGTGTATTACCAACCAGAGGGA
ATACGAGTTAGCTTGAAACTTTTGGAAGCAAGTCCTGCAGATGCTGAAAATCATGTTTCA
ATTCTGCCAGTAAAGTATGAAGAACCTTAACATGCGATTCAGCAGATTGAAATTTAGGAA
ACTTGCACTGTAAATGAAGTGAACTCCTTGTCAGTTATAATTTTTCCTTTTCAATATATC
TCTACCCCT