Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044433_T029
CDS Infomation

cds chromosome:B73_RefGen_v4:3:227872099:227884610:-1 gene:Zm00001d044433 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:leunig-related1 description: leunig-related1
Sequence

ATGTCGCAGACGAACTGGGAGGCGGATAAGATGCTGGATGTGTACATATATGACTATTTT
GTCAAGAGAAACCTGCAGGCAACCGCAAAGGCCTTCCAAGCAGAAGGCAAGGTCTCATCA
GATCCAGTTGCTATTGATGCTCCTGGTGGCTTTCTCTTTGAGTGGTGGTCTGTATTTTGG
GATATATTCATAGCAAGAACAAATGAGAAGCATTCAGATGTTGCAGCATCATATATCGAG
ACTCAGCTAATTAAAGCAAGGGAACAACAACACCAGCAGCCACCTCAACAACAGCAACAG
CAGCAGCAAATACAAATGCAACAAATGCTGTTACATAGAGCTGCACAGCAGCAGCAACAG
CAGCAGCGTAGAGATGGTTCTCTTCTCAATGGTACTGCAAGTGGATTTTCTGGGAATGAT
CCTTTAATCCGACAAAATCCAGCTAATGCGAATTCGATGGCAGCAAAAATGTATGAAGAG
AGGTTAAAGCTCCCTCCCCAGCGGGATTCTCTGGATGAGGCGTCAATAAAGTTGCAGCAA
AGATATGGAGAAAATGTGGGACAAGTAATTGATCCGAACCAAGCACTATTGAAAGCAGCT
GCAGCTGGACAATCCTCTGGGCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACT
CCGCAACAAGTTCAGGCAAGAAGCCCACAACAACCACCTACAGCAGAACAGAATATCAGG
ACCGAGATCAATCCAGTGTTGACACCAAGAGCAGCAGGCACTGAGGGTTCATTGATTGGT
ATCCAAGGATCTAATCAGGCTGGAAACAATTTAACTCTGAAAGGCTGGCCGCTCACGGGA
CTTGATCATTTTCGCTCTGGAATTCTGCAGCAGAAGCCATTTATGCAATCTCCACAGCAA
TTTCAGCAGCTCCAGTTTCTGACCCCACAGCAGCAGCAGCAGCTTTTGCTGCACGCTCAG
CAAAATCTGTCGTCCTCGATGTCAAGCGATGTTGATACCAGGAGATTAAGGATGCTTCTT
AACAACAGGAATGTGGTCCTTGGACAGGATGGGCAGACAAATAGCGGCGGTGATGTTATC
CCAAATATTGGTTCGCCAGGGCAAAGTGGTGGATCGCGTAATGATATAGATATACTAATA
AAGAAGAAATTTGCTCTTCTACAGCAGCAGCAGCAGCAGCAAAGTCATAGCCAGCAGCAG
CAGCTTCAGCAACCTGCGCTCTCTGGACAGCAATCTCAAAGTTCAAACCAGCTTCTCCAT
CAGCATGGAAAACCAGGAGTTGGGAGCTTGCCTATTGATGGAAACTTGCCAAACTCTTTT
GGATTTCCTGAACAAGGATCAAAGAAGAGAAAGAAACCTGTCTCATCCTCTGGTAGAGCT
AATAGTTCAGGAACAGCGAACACTGCTGGGCCATCTCCTAGCTCTGCACCCTCAACACCA
TCTACTCACACGCCAGGAGATGCAATGTCCATTCCACAGCTGCAGTATAATGGTGGCCCT
TCAAAACCATTGATGATGTTTGGCTCTGATGGCACTGGAAGCTTGACTTCTCCAGCAAAC
CCGCTGGGTGATGTTGAACGTCTGTTGGAAGATGGTTCCTTGGATGAAAATGTAGAATCT
TTTTTATCGCAAGATGACATGGATCCTCGAGAAACAATGGGACGCTGCATGGATTCTAGT
AAAGGGTTGGGTTTTACTGAGGTTGCAAAAGCCCGTGCGAGTACAAACAAAGTTGTTTGT
TGCCATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGGTCGTT
TTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAGCACTCTTCCCTAATT
ACAGATGTCCGATTCAGCCCTGGCATGACCCGCCTTGCCACATCTTCCTTTGACAAAACC
GTGCGGGTTTGGGACGCTGACAATCCAGATTATTCGCTACGCACTTTTACAGGTCATTCA
GCATCTGTCATGTCACTTGATTTTCATCCGAACAAAGAAGACATCGTTTGTTCGTGTGAT
AGTGATGGTGAAGTGCGGTGTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGG
GTTTTCAATGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
GCTGCCTCAGAAAAGGGAATATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACT
CCTTTGCAG

Peptide Sequence

PEP ID

Zm00001d044433_P029
PEP Infomation

pep chromosome:B73_RefGen_v4:3:227872099:227884610:-1 gene:Zm00001d044433 transcript:Zm00001d044433_T029 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:leunig-related1 description: leunig-related1
Sequence

MSQTNWEADKMLDVYIYDYFVKRNLQATAKAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
DIFIARTNEKHSDVAASYIETQLIKAREQQHQQPPQQQQQQQQIQMQQMLLHRAAQQQQQ
QQRRDGSLLNGTASGFSGNDPLIRQNPANANSMAAKMYEERLKLPPQRDSLDEASIKLQQ
RYGENVGQVIDPNQALLKAAAAGQSSGQILHGTASGLSGTPQQVQARSPQQPPTAEQNIR
TEINPVLTPRAAGTEGSLIGIQGSNQAGNNLTLKGWPLTGLDHFRSGILQQKPFMQSPQQ
FQQLQFLTPQQQQQLLLHAQQNLSSSMSSDVDTRRLRMLLNNRNVVLGQDGQTNSGGDVI
PNIGSPGQSGGSRNDIDILIKKKFALLQQQQQQQSHSQQQQLQQPALSGQQSQSSNQLLH
QHGKPGVGSLPIDGNLPNSFGFPEQGSKKRKKPVSSSGRANSSGTANTAGPSPSSAPSTP
STHTPGDAMSIPQLQYNGGPSKPLMMFGSDGTGSLTSPANPLGDVERLLEDGSLDENVES
FLSQDDMDPRETMGRCMDSSKGLGFTEVAKARASTNKVVCCHFSLDGKLLATGGHDKKVV
LWFTDVLKRKSALEEHSSLITDVRFSPGMTRLATSSFDKTVRVWDADNPDYSLRTFTGHS
ASVMSLDFHPNKEDIVCSCDSDGEVRCWSINNGSCVTCVRVFNGGATRLRFQPRQGKYLA
AASEKGISILDAETLQVCRTPLQ

Transcript Sequence

Transcript ID

Zm00001d044433_T029
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:227872099:227884610:-1 gene:Zm00001d044433 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:leunig-related1 description: leunig-related1
Sequence

CGGCTGCCCCACACCTCTGCTCTTCCCTCTCGCCTCCCGCCGTTACAGCTTGCAGCTCCA
GCCCCAACCCCCGTCCCTCTCTCCCTGAGCCGTCGCCTTCGCCTTCGCTGCGAAATCTAG
GGTTTACGCCGCGCATCGGGTACCGCGCACGCACCGACCGACCACCCGGCGGTCGGCGCC
GCTACACGCGGGCTCGCTCTCAGGTGGTTGAGCGTGGCCGGAGAAGGGGAGGGGCGACAC
TGCTCGTGGGTGGGTCAGCCAGTGTGCCCCACGAGGAACGGCAATCATGTCGCAGACGAA
CTGGGAGGCGGATAAGATGCTGGATGTGTACATATATGACTATTTTGTCAAGAGAAACCT
GCAGGCAACCGCAAAGGCCTTCCAAGCAGAAGGCAAGGTCTCATCAGATCCAGTTGCTAT
TGATGCTCCTGGTGGCTTTCTCTTTGAGTGGTGGTCTGTATTTTGGGATATATTCATAGC
AAGAACAAATGAGAAGCATTCAGATGTTGCAGCATCATATATCGAGACTCAGCTAATTAA
AGCAAGGGAACAACAACACCAGCAGCCACCTCAACAACAGCAACAGCAGCAGCAAATACA
AATGCAACAAATGCTGTTACATAGAGCTGCACAGCAGCAGCAACAGCAGCAGCGTAGAGA
TGGTTCTCTTCTCAATGGTACTGCAAGTGGATTTTCTGGGAATGATCCTTTAATCCGACA
AAATCCAGCTAATGCGAATTCGATGGCAGCAAAAATGTATGAAGAGAGGTTAAAGCTCCC
TCCCCAGCGGGATTCTCTGGATGAGGCGTCAATAAAGTTGCAGCAAAGATATGGAGAAAA
TGTGGGACAAGTAATTGATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATC
CTCTGGGCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGTTCA
GGCAAGAAGCCCACAACAACCACCTACAGCAGAACAGAATATCAGGACCGAGATCAATCC
AGTGTTGACACCAAGAGCAGCAGGCACTGAGGGTTCATTGATTGGTATCCAAGGATCTAA
TCAGGCTGGAAACAATTTAACTCTGAAAGGCTGGCCGCTCACGGGACTTGATCATTTTCG
CTCTGGAATTCTGCAGCAGAAGCCATTTATGCAATCTCCACAGCAATTTCAGCAGCTCCA
GTTTCTGACCCCACAGCAGCAGCAGCAGCTTTTGCTGCACGCTCAGCAAAATCTGTCGTC
CTCGATGTCAAGCGATGTTGATACCAGGAGATTAAGGATGCTTCTTAACAACAGGAATGT
GGTCCTTGGACAGGATGGGCAGACAAATAGCGGCGGTGATGTTATCCCAAATATTGGTTC
GCCAGGGCAAAGTGGTGGATCGCGTAATGATATAGATATACTAATAAAGAAGAAATTTGC
TCTTCTACAGCAGCAGCAGCAGCAGCAAAGTCATAGCCAGCAGCAGCAGCTTCAGCAACC
TGCGCTCTCTGGACAGCAATCTCAAAGTTCAAACCAGCTTCTCCATCAGCATGGAAAACC
AGGAGTTGGGAGCTTGCCTATTGATGGAAACTTGCCAAACTCTTTTGGATTTCCTGAACA
AGGATCAAAGAAGAGAAAGAAACCTGTCTCATCCTCTGGTAGAGCTAATAGTTCAGGAAC
AGCGAACACTGCTGGGCCATCTCCTAGCTCTGCACCCTCAACACCATCTACTCACACGCC
AGGAGATGCAATGTCCATTCCACAGCTGCAGTATAATGGTGGCCCTTCAAAACCATTGAT
GATGTTTGGCTCTGATGGCACTGGAAGCTTGACTTCTCCAGCAAACCCGCTGGGTGATGT
TGAACGTCTGTTGGAAGATGGTTCCTTGGATGAAAATGTAGAATCTTTTTTATCGCAAGA
TGACATGGATCCTCGAGAAACAATGGGACGCTGCATGGATTCTAGTAAAGGGTTGGGTTT
TACTGAGGTTGCAAAAGCCCGTGCGAGTACAAACAAAGTTGTTTGTTGCCATTTCTCATT
GGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGGTCGTTTTATGGTTTACAGA
TGTGCTAAAACGTAAATCCGCATTAGAAGAGCACTCTTCCCTAATTACAGATGTCCGATT
CAGCCCTGGCATGACCCGCCTTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGA
CGCTGACAATCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTC
ACTTGATTTTCATCCGAACAAAGAAGACATCGTTTGTTCGTGTGATAGTGATGGTGAAGT
GCGGTGTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAATGGAGG
AGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAGCTGCCTCAGAAAA
GGGAATATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGG