Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044397_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:227119946:227122395:1 gene:Zm00001d044397 gene_biotype:protein_coding transcript_biotype:protein_coding description:Small RNA 2'-O-methyltransferase
Sequence	ATGTCTAGGGATTCGATTCTTGTAGCGGAGCTTCCATCTGCATACTCTCGTTTTAGTTGG CAAGGCCTCTCTCCACGAGATCTCCTTTGCTCATTTTGTCGCCTTCAGAGGTTGCCAGAG CCCCATTTTGCTGTCAGTAGGGTCTCCTGTGATACATTAATGTCAGCTTTGAGCTCTAAA GAAAGAGGAGCGCCAGCAGGCAGCGCAGAAAATCAGTACACCAATGATGTCAGGATCAAC AAGGAAAAACCAGATCTTTTTAAATGTGAAGTGAACATACGTTCACGGAAGCAAGAAATT TTACTAGAGTATTCTGCAGCTGACACTTGGAGCAAGGAATCTGATGCTATTCAGAATTCT TCATTGAAGGTCTTGATTTGGTTCAATAATTATTTTAAGAAACTAACCTCAAAAACAGGC AAGCTATATCTTTCTGAGTCTACTGCTGATGTCAAGGTACATTCAAATATTTTTCTTCAA GAGTTTGCAATGTGTCTATCTGTTTATGGCAAGAATGGAGGCAGTGATTCAGCAATGTGC AGTGCAGTTGGACCATTTTCTATGGATACACAAAAGAAGCACCTTGAAAGCACTGCAAAG TTAACACACATTGAAGGTCCAGACTCTGGTGTTTTCCCGTCCCACGGATCATTGACTTGT ATAAGTTATACTGCTTCCCTTGTGACAAAGGATAAAGCAAAAACATATTTGTTGGAGAGC CACAATGAGTTTGAGTTTGAGATTGGGACGGGTGTTGTTAGTAATCAGCTTGAATCATGT GTAACTCAGCTGTCAGTGAATCAAACTGCACGTTTTGTAGCTGAACTGCCTCCTAGGGAT TTAATCATGGCTGCATCTTGTGAGTTCTCACATGACCTCTCCAATGTATCTAGCGAGAGC TGCTTCCTGGAGTTCTCTGTAAAGGTTCTGCAGGTAACTGAACCATTAGAAGATAGAATG GAGAAAGCCCTGTTCAGTCCTCCATTATCTAAACAAAGAGTCGAATTTGATGTACGACAC ATCAACGAGCTGCATGGTACCACACTTGTTGATTTTGGCTGTGGATCTGGTAGCCTTCTT GATTCATTGTTAGAGCATCCAACCACGCTGGAAAAGCTTGTTGGCGTTGATATTTCTCGA AAAGGCCTCACACGTGCAGCAAAGGTGATCGAGCACGTCGAGGAGGACCAGGCGACTTTA TTTGGCAACATCGTCTTGAGTTCATTCCGCCCGACCGTGCTCATTGTTTCCACACCCAAC TACGAATACAATCCTATCCTCCAGGGGTCTGCTATGCCCAACAAGGACGACGAGGCAGAC GAAAGCACTGGTCCCTACAAGTTCCGCAATCACGACCGCAAGTTCGAGTGGACCAGGCTA CAGTTCCAGTGTTGGGCTACTGGCCTCGCGGTGAAGCATAGCTACAGTGTGGAATTCTCC GGCGTCGGTGGCTCAGGCGAGGAGCTAGGCTACGCTTCCCAGATCGCTATTTTCAGAAGA CTGGTGCAGGGCCAGGAAGCGATGTGCCTGGACAAGGATGGCGATCAGCCTTACGAGGTT CTCTGGGAGTGGCCTAACGCGTGTGTGAACTAG

Peptide Sequence

PEP ID	Zm00001d044397_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:227119946:227122395:1 gene:Zm00001d044397 transcript:Zm00001d044397_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Small RNA 2'-O-methyltransferase
Sequence	MSRDSILVAELPSAYSRFSWQGLSPRDLLCSFCRLQRLPEPHFAVSRVSCDTLMSALSSK ERGAPAGSAENQYTNDVRINKEKPDLFKCEVNIRSRKQEILLEYSAADTWSKESDAIQNS SLKVLIWFNNYFKKLTSKTGKLYLSESTADVKVHSNIFLQEFAMCLSVYGKNGGSDSAMC SAVGPFSMDTQKKHLESTAKLTHIEGPDSGVFPSHGSLTCISYTASLVTKDKAKTYLLES HNEFEFEIGTGVVSNQLESCVTQLSVNQTARFVAELPPRDLIMAASCEFSHDLSNVSSES CFLEFSVKVLQVTEPLEDRMEKALFSPPLSKQRVEFDVRHINELHGTTLVDFGCGSGSLL DSLLEHPTTLEKLVGVDISRKGLTRAAKVIEHVEEDQATLFGNIVLSSFRPTVLIVSTPN YEYNPILQGSAMPNKDDEADESTGPYKFRNHDRKFEWTRLQFQCWATGLAVKHSYSVEFS GVGGSGEELGYASQIAIFRRLVQGQEAMCLDKDGDQPYEVLWEWPNACVN

Transcript Sequence

Transcript ID	Zm00001d044397_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:227119946:227122395:1 gene:Zm00001d044397 gene_biotype:protein_coding transcript_biotype:protein_coding description:Small RNA 2'-O-methyltransferase
Sequence	ACCAAACTTCCTATAGTTCTTCAGAGTGACACACTGACATGCTTTTGCCTCAGGATACTT CTGGGCAAGTTACCTGATGGAAATTGTAAGATGTCTAGGGATTCGATTCTTGTAGCGGAG CTTCCATCTGCATACTCTCGTTTTAGTTGGCAAGGCCTCTCTCCACGAGATCTCCTTTGC TCATTTTGTCGCCTTCAGAGGTTGCCAGAGCCCCATTTTGCTGTCAGTAGGGTCTCCTGT GATACATTAATGTCAGCTTTGAGCTCTAAAGAAAGAGGAGCGCCAGCAGGCAGCGCAGAA AATCAGTACACCAATGATGTCAGGATCAACAAGGAAAAACCAGATCTTTTTAAATGTGAA GTGAACATACGTTCACGGAAGCAAGAAATTTTACTAGAGTATTCTGCAGCTGACACTTGG AGCAAGGAATCTGATGCTATTCAGAATTCTTCATTGAAGGTCTTGATTTGGTTCAATAAT TATTTTAAGAAACTAACCTCAAAAACAGGCAAGCTATATCTTTCTGAGTCTACTGCTGAT GTCAAGGTACATTCAAATATTTTTCTTCAAGAGTTTGCAATGTGTCTATCTGTTTATGGC AAGAATGGAGGCAGTGATTCAGCAATGTGCAGTGCAGTTGGACCATTTTCTATGGATACA CAAAAGAAGCACCTTGAAAGCACTGCAAAGTTAACACACATTGAAGGTCCAGACTCTGGT GTTTTCCCGTCCCACGGATCATTGACTTGTATAAGTTATACTGCTTCCCTTGTGACAAAG GATAAAGCAAAAACATATTTGTTGGAGAGCCACAATGAGTTTGAGTTTGAGATTGGGACG GGTGTTGTTAGTAATCAGCTTGAATCATGTGTAACTCAGCTGTCAGTGAATCAAACTGCA CGTTTTGTAGCTGAACTGCCTCCTAGGGATTTAATCATGGCTGCATCTTGTGAGTTCTCA CATGACCTCTCCAATGTATCTAGCGAGAGCTGCTTCCTGGAGTTCTCTGTAAAGGTTCTG CAGGTAACTGAACCATTAGAAGATAGAATGGAGAAAGCCCTGTTCAGTCCTCCATTATCT AAACAAAGAGTCGAATTTGATGTACGACACATCAACGAGCTGCATGGTACCACACTTGTT GATTTTGGCTGTGGATCTGGTAGCCTTCTTGATTCATTGTTAGAGCATCCAACCACGCTG GAAAAGCTTGTTGGCGTTGATATTTCTCGAAAAGGCCTCACACGTGCAGCAAAGGTGATC GAGCACGTCGAGGAGGACCAGGCGACTTTATTTGGCAACATCGTCTTGAGTTCATTCCGC CCGACCGTGCTCATTGTTTCCACACCCAACTACGAATACAATCCTATCCTCCAGGGGTCT GCTATGCCCAACAAGGACGACGAGGCAGACGAAAGCACTGGTCCCTACAAGTTCCGCAAT CACGACCGCAAGTTCGAGTGGACCAGGCTACAGTTCCAGTGTTGGGCTACTGGCCTCGCG GTGAAGCATAGCTACAGTGTGGAATTCTCCGGCGTCGGTGGCTCAGGCGAGGAGCTAGGC TACGCTTCCCAGATCGCTATTTTCAGAAGACTGGTGCAGGGCCAGGAAGCGATGTGCCTG GACAAGGATGGCGATCAGCCTTACGAGGTTCTCTGGGAGTGGCCTAACGCGTGTGTGAAC TAGGTAGATTGCACGTCTAATCTCTCTAGGGCTTGGAACTTCGAATCGTGTCCCCGGTTT GGAACTGATTAATATATCTGTCAGGAAAGTGGGCATCTGACTTGTGGCAAGAACACAAAA ATTAACATTGTTGCATGCAAGTGCAGAAATTCAGTCTGCTTCTAGGTTC