Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044379_T008
CDS Infomation	cds chromosome:B73_RefGen_v4:3:226474008:226482560:1 gene:Zm00001d044379 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence	ATGGCCGACCCGCCGGCCTCCGACGCACAGCCGGAGCAGGCGCCCGCCGCCGCTGCTGCT TCCAATGACCCTGCCGAGGACGCCACGGTCGAGAAGCCCCTCGCGGCGCCGCCCACGCCG AAGCTGGACGCCGCTGCGGCGGCGGATGGGTCAGCGTATGAGGTGGAGGATGATGAGTAC GTGAGCGATCCCAACGATGAGCCGTTTCCTACGATGCGTCGTCGAGAGGCCAGCGACGAC GAGGGGTCCGAGGACGGGAGGCCCAGGGCGCGGATCGGCCCTGACCAGGACGACGACGGC CAGGGGGGCCCCGAGGCGTACGACGACGAGGTGGACGAGGAGGATGAGGAGTACTACGAC GAGGAAGAGGAGGACCTGGGAGAGGGATTCGAGGAGTACGAAGGGCGCGCGGCACCTCCC ATGGAGGACGGCGGCGGCGGCGGCGGCGGCCAAGTCTCGCGCGGAGAGGATGGCGTGGCT GGAGAGGAGGGATTGCCGGAGGGGGAGGCCAAGGGCGAGGGAGAAGAGAAGGAGCAGGAG CCCTTCGCCGTGCCCACTTCCGGCGCCTTCTACATGCACGATGACCGGTTTCAGGAGGAG AACCGCGGCAGGCGCAGGCGAATGTTTGGTGCAAGGAAGTTATGGGATGCTAAAGATGAT CAAGCTTGGGTGCATGACAGATTTGAGGAGATGAACTTGCATGATGATCGCTATGAAGAC CAGCGGATGTCTAGAGGTCGTTTTAGAGGTCGTGGTGGTCGAGGTAAAGCAAGAGGTGGT GGCCGTGGTTTTCCCAGAGGTGGGAAGCAGCCCAATTACCATGAAGATGGCAACACCCAA AACCGCCCCCCAAAGGTAGTGAGAGGGAGGGGACCTCGACGTTATGAAGCTGTTGCAAGG AGCAGCAGAGAGGTTGTTGGATCCCAACGAAAGCAAGCAGCTAGATTTCGAGAGCCTGTT CCAAATGCTGCAGCAGCCAGAAATTCTGGTCAAGTTTCACATGCACAACAAGAGGCTGCT CCTCCCAAAAAGAATGTCATCAGCTCAAGCCTGAATTCTGCATCCCCTCCATTTTATCCC TCTGGTGCAGCTTGTCAAGATTTTCCGGTAGCAACTCAGAGGAGAGACATACAAACAGGA GGTTCTAATAAGATTCCTCCATCTTCCATGAAGATGGATGATAACTCAATATTACAATCT GGTTCAATGGTTAGAGGGAGAACAGCCATGGATTATGGTGGGCGTGATAGGTTTCATGCT GATGGTCCTGTTAGGTCATCCCTTGGAAGGGTGCCAACGGCGTCACTGAATTCAGGATTT ACATCATCATTGGTAAATCCTAGCCAATCCACTATTGTCCGGGCTTCAGGGGGCAATTCA AACATTGGAATATCTTCAAATAATCAGCCTACTTCATCGCTTCACCAAACGTCAAGGATT TCTACACATCCACAAAGTCATGGACCAGTGATGCACCAGAAGTCAATGCAAGTGCAGAAT CAGTCTGCAGCAAGAATTCCAACTCAGCAATTGAGCCATCGGACTAACAATTCATTACCA GCAGCTCAGCATCTATCTGTTAAATCAACAGAAAGTGGCGAGAATGGTTCATACCCTAGT CTGAACAATTCAAAGACAGCTTCTGCAGTGGTAAAAGCCAATAGCCAGGAAACTGGAATG GATTCATTGATGTATGGTGGTGCCCAAGTTATTGGGGCTGCTGGTCTTTCCCAGGGAGAT CAAAATTTTCCTGGCACTCCAGCTTTGCTGCCAGTGATGCAATTTGGGGGTCAGCATCCT GGTGGTCTTGGAGTTCCTACTGTTGGTATGGCCCTCCCTGGCTATGTATCTCAACAGCAG ATGGGAATGGGAAACAATGAAATGGCATGGTTGCCATTATTGGCTGGTGCTGCTGGTGCT TTTGGAGCATCATATCCACCATATATAACTCTTGATCCGAGTTTTTACTCCAGGTCTCCA GGACAGACATCATCATCAGTTCCATCCAGGGAACCTAGTGCTAATAGAGGGTCTAAATCT CCTCCTCGAAATGATATTGGAAATGAGGAGCTTGATCAGCGCCAGAACAAACCTAGGAGA TACTCAGAGATGAACTTCAGCCAGTGA

Peptide Sequence

PEP ID	Zm00001d044379_P008
PEP Infomation	pep chromosome:B73_RefGen_v4:3:226474008:226482560:1 gene:Zm00001d044379 transcript:Zm00001d044379_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence	MADPPASDAQPEQAPAAAAASNDPAEDATVEKPLAAPPTPKLDAAAAADGSAYEVEDDEY VSDPNDEPFPTMRRREASDDEGSEDGRPRARIGPDQDDDGQGGPEAYDDEVDEEDEEYYD EEEEDLGEGFEEYEGRAAPPMEDGGGGGGGQVSRGEDGVAGEEGLPEGEAKGEGEEKEQE PFAVPTSGAFYMHDDRFQEENRGRRRRMFGARKLWDAKDDQAWVHDRFEEMNLHDDRYED QRMSRGRFRGRGGRGKARGGGRGFPRGGKQPNYHEDGNTQNRPPKVVRGRGPRRYEAVAR SSREVVGSQRKQAARFREPVPNAAAARNSGQVSHAQQEAAPPKKNVISSSLNSASPPFYP SGAACQDFPVATQRRDIQTGGSNKIPPSSMKMDDNSILQSGSMVRGRTAMDYGGRDRFHA DGPVRSSLGRVPTASLNSGFTSSLVNPSQSTIVRASGGNSNIGISSNNQPTSSLHQTSRI STHPQSHGPVMHQKSMQVQNQSAARIPTQQLSHRTNNSLPAAQHLSVKSTESGENGSYPS LNNSKTASAVVKANSQETGMDSLMYGGAQVIGAAGLSQGDQNFPGTPALLPVMQFGGQHP GGLGVPTVGMALPGYVSQQQMGMGNNEMAWLPLLAGAAGAFGASYPPYITLDPSFYSRSP GQTSSSVPSREPSANRGSKSPPRNDIGNEELDQRQNKPRRYSEMNFSQ

Transcript Sequence

Transcript ID	Zm00001d044379_T008
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:226474008:226482560:1 gene:Zm00001d044379 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence	CTCACCATACCGCAACGCGCCGCTCCCAAATCTAGGGTTCCTTTTTGACCATGGCCGACC CGCCGGCCTCCGACGCACAGCCGGAGCAGGCGCCCGCCGCCGCTGCTGCTTCCAATGACC CTGCCGAGGACGCCACGGTCGAGAAGCCCCTCGCGGCGCCGCCCACGCCGAAGCTGGACG CCGCTGCGGCGGCGGATGGGTCAGCGTATGAGGTGGAGGATGATGAGTACGTGAGCGATC CCAACGATGAGCCGTTTCCTACGATGCGTCGTCGAGAGGCCAGCGACGACGAGGGGTCCG AGGACGGGAGGCCCAGGGCGCGGATCGGCCCTGACCAGGACGACGACGGCCAGGGGGGCC CCGAGGCGTACGACGACGAGGTGGACGAGGAGGATGAGGAGTACTACGACGAGGAAGAGG AGGACCTGGGAGAGGGATTCGAGGAGTACGAAGGGCGCGCGGCACCTCCCATGGAGGACG GCGGCGGCGGCGGCGGCGGCCAAGTCTCGCGCGGAGAGGATGGCGTGGCTGGAGAGGAGG GATTGCCGGAGGGGGAGGCCAAGGGCGAGGGAGAAGAGAAGGAGCAGGAGCCCTTCGCCG TGCCCACTTCCGGCGCCTTCTACATGCACGATGACCGGTTTCAGGAGGAGAACCGCGGCA GGCGCAGGCGAATGTTTGGTGCAAGGAAGTTATGGGATGCTAAAGATGATCAAGCTTGGG TGCATGACAGATTTGAGGAGATGAACTTGCATGATGATCGCTATGAAGACCAGCGGATGT CTAGAGGTCGTTTTAGAGGTCGTGGTGGTCGAGGTAAAGCAAGAGGTGGTGGCCGTGGTT TTCCCAGAGGTGGGAAGCAGCCCAATTACCATGAAGATGGCAACACCCAAAACCGCCCCC CAAAGGTAGTGAGAGGGAGGGGACCTCGACGTTATGAAGCTGTTGCAAGGAGCAGCAGAG AGGTTGTTGGATCCCAACGAAAGCAAGCAGCTAGATTTCGAGAGCCTGTTCCAAATGCTG CAGCAGCCAGAAATTCTGGTCAAGTTTCACATGCACAACAAGAGGCTGCTCCTCCCAAAA AGAATGTCATCAGCTCAAGCCTGAATTCTGCATCCCCTCCATTTTATCCCTCTGGTGCAG CTTGTCAAGATTTTCCGGTAGCAACTCAGAGGAGAGACATACAAACAGGAGGTTCTAATA AGATTCCTCCATCTTCCATGAAGATGGATGATAACTCAATATTACAATCTGGTTCAATGG TTAGAGGGAGAACAGCCATGGATTATGGTGGGCGTGATAGGTTTCATGCTGATGGTCCTG TTAGGTCATCCCTTGGAAGGGTGCCAACGGCGTCACTGAATTCAGGATTTACATCATCAT TGGTAAATCCTAGCCAATCCACTATTGTCCGGGCTTCAGGGGGCAATTCAAACATTGGAA TATCTTCAAATAATCAGCCTACTTCATCGCTTCACCAAACGTCAAGGATTTCTACACATC CACAAAGTCATGGACCAGTGATGCACCAGAAGTCAATGCAAGTGCAGAATCAGTCTGCAG CAAGAATTCCAACTCAGCAATTGAGCCATCGGACTAACAATTCATTACCAGCAGCTCAGC ATCTATCTGTTAAATCAACAGAAAGTGGCGAGAATGGTTCATACCCTAGTCTGAACAATT CAAAGACAGCTTCTGCAGTGGTAAAAGCCAATAGCCAGGAAACTGGAATGGATTCATTGA TGTATGGTGGTGCCCAAGTTATTGGGGCTGCTGGTCTTTCCCAGGGAGATCAAAATTTTC CTGGCACTCCAGCTTTGCTGCCAGTGATGCAATTTGGGGGTCAGCATCCTGGTGGTCTTG GAGTTCCTACTGTTGGTATGGCCCTCCCTGGCTATGTATCTCAACAGCAGATGGGAATGG GAAACAATGAAATGGCATGGTTGCCATTATTGGCTGGTGCTGCTGGTGCTTTTGGAGCAT CATATCCACCATATATAACTCTTGATCCGAGTTTTTACTCCAGGTCTCCAGGACAGACAT CATCATCAGTTCCATCCAGGGAACCTAGTGCTAATAGAGGGTCTAAATCTCCTCCTCGAA ATGATATTGGAAATGAGGAGCTTGATCAGCGCCAGAACAAACCTAGGAGATACTCAGAGA TGAACTTCAGCCAGTGAAGCATCTTGTAAGGCCCTATTTAGGCCCTTTGTGATCTCCAGT TCTGATCTGGAGCACTTTGGGTGGCTTTGGTATCCTTACTTATGTTAGGTCTTATGCCTG TTCGTGCTGGAGTTATCTGATGGGTCACTTCACAGCAAAGGAGGGGTGGCATTTGTTACT TGAATTGTAGTATTGCTCGGTTGTGTTGCGTCAGGAAATGCCAAATTTGTTGGTTGTTGC TGCGTCTGAAGATGTGCACGGTTGTTGAGGAGAGCTTGAAAATATTGGTCTGGTTGGGCT GATAAAGTTAAGAGTATTTTTTAAGTACACCTTGTTAGTGAATCCGGTTGGTGTCGGTCT ACTCTGCTGAAGACCAAGCGGCTTCATTGCCGCAGCTTGTATCTTTTGGAATCCGTTGAA ATGTGCGTGCGGTTTGACTACTTTCAGCTTAAATGAGCGTGCCCAACATGGATTTTTCGG TTACCTGCAAGAAAAGCCAACAGAATAATCCGCCCGTCGTTTCCCCCCGGGTG