Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044313_T025
CDS Infomation

cds chromosome:B73_RefGen_v4:3:224990075:224995951:1 gene:Zm00001d044313 gene_biotype:protein_coding transcript_biotype:protein_coding description:SIT4 phosphatase-associated family protein
Sequence

ATGCTTGACAGTTTAGGCAACTTGCTGAAGTTACTGGACACTTCGGCTACTGAAAGCGGG
TTGCCAACAACTTATGGATCTTTGCGCCCACCTCTTGGAAAACATCGTCTGAAGATTGTA
GAATTCATCTCTGTGCTGCTTACAATTGGAAGTGAAACTGCTGAAAAAGAGCTAAGAAGG
CAGTCAGCAATAAAGCGCTCGATTGATTTGTTCTTTGAGTATCCATATAACAACTTTTTG
CACCATCATGTTGAGAATATAATTGTTGCTTGCCTGGAGGGTAAAAGACCTGAAGTTGTT
GAGCATGTTCTTCATGAATGTGATATTGTTGGTAAAATTCTTGTCTCAGAGAGGTTTTCA
TCCTTGTCGACTGAGTCTAATGGGCCTACTGTTCCCTCTGAAGGGAAAACCCCTCCAAGA
ATTGGAAATGTTGGTCACATGACAAGAATAGCCAATAAACTTATTCAGTTGGGCAATAGT
AACAACACAATCCAGGCTCACTTACAGGAAAATAATGATTGGGTTGAATGGCAAACAAAT
GTGCTGGTCAAACGCAATGAAGTGGAGAATGTTTATCATTGGGCTTGTGGGCGCCCGACA
TCTTTACATGACCGTGGTAGGGACAGCGATGATGATGACTTCCGGGACAGGGATTACGAC
GTGGCAGCTCTTGCTAATAACTTAAGTCAGGCATTTCGTTATGGGATATATAGCAACGAT
GACATTGAAGAGGCACAAGGATCACTTGAACGAGATGATGAGGATGTGTATTTTGATGAT
GAATCAGCTGAGGTTGTAATATCTTCTTTGCGTCTGGGAGATGACCAGGACAGCTCCCTC
TTTACAAATTCAAATTGGTTCACATTTGATGGAGAGAGAGGCATTGATGATCGTTTATCT
GCCTCTGTTCCTTCATCATCCCCCAATTCTCTGGAGACTTCACTAGAGGCCGAGGAAGCT
GATGATGGTAAAGTCATTGGCACTGAGGATGAAATGGAAACAGTATATCTTGGAAATGGT
AGTGCTGAGGAGGTAAAAGATGTAGCAGAATGTAATGAACAGCCAAATTGTTGTACTGAG
GATGAGCGATTGAAAAATACTGAAGGGATTGAACGGCATCCAGATGTTTCAAATCACTAT
ACCGACATATGTACAAATGAGGCTGCCTCTGCTGCAGCAGAATCTTCAGCCCCATCAGTT
GAGATAGTGGCAAAGAAAACAGTAGATGAACCATCGGAGGCAGAAAGAACAGTGGATGAA
CCGGCAGAATCATCTTTGGACAGTTCTGTCTCTATACCTTTGCCTGCTCCTGTTAATGGT
AGTGAGCCTGCCAACTCGGAAGCCTCTTCCGAACAAGTTGCCCATGACACTGATGTGCAG
CAACCAGTCAAGGAAGCTCCTGATGAGGACGTTAATGCAAAGAAAACTGATGTAGCCAAA
GCAAGCGAGTGA

Peptide Sequence

PEP ID

Zm00001d044313_P025
PEP Infomation

pep chromosome:B73_RefGen_v4:3:224990075:224995951:1 gene:Zm00001d044313 transcript:Zm00001d044313_T025 gene_biotype:protein_coding transcript_biotype:protein_coding description:SIT4 phosphatase-associated family protein
Sequence

MLDSLGNLLKLLDTSATESGLPTTYGSLRPPLGKHRLKIVEFISVLLTIGSETAEKELRR
QSAIKRSIDLFFEYPYNNFLHHHVENIIVACLEGKRPEVVEHVLHECDIVGKILVSERFS
SLSTESNGPTVPSEGKTPPRIGNVGHMTRIANKLIQLGNSNNTIQAHLQENNDWVEWQTN
VLVKRNEVENVYHWACGRPTSLHDRGRDSDDDDFRDRDYDVAALANNLSQAFRYGIYSND
DIEEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQDSSLFTNSNWFTFDGERGIDDRLS
ASVPSSSPNSLETSLEAEEADDGKVIGTEDEMETVYLGNGSAEEVKDVAECNEQPNCCTE
DERLKNTEGIERHPDVSNHYTDICTNEAASAAAESSAPSVEIVAKKTVDEPSEAERTVDE
PAESSLDSSVSIPLPAPVNGSEPANSEASSEQVAHDTDVQQPVKEAPDEDVNAKKTDVAK
ASE

Transcript Sequence

Transcript ID

Zm00001d044313_T025
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:224990075:224995951:1 gene:Zm00001d044313 gene_biotype:protein_coding transcript_biotype:protein_coding description:SIT4 phosphatase-associated family protein
Sequence

AGTTTTGTTGGAAGGTTGTTCCATCATGCTCTTGAAGAATCAAGACCCAAATCTGTTCTG
GTTCATTCACTATCAGTGTGCATATCTTTGCTGGATCCGAAAAGACTAGCATCAGCTTCG
TATCAAGCATTCAGAAGCAACTTAAGTCATGGGGCATTGGTCACAGCCAGTCCAGAGACA
GTTGATGGCATGCTTGACAGTTTAGGCAACTTGCTGAAGTTACTGGACACTTCGGCTACT
GAAAGCGGGTTGCCAACAACTTATGGATCTTTGCGCCCACCTCTTGGAAAACATCGTCTG
AAGATTGTAGAATTCATCTCTGTGCTGCTTACAATTGGAAGTGAAACTGCTGAAAAAGAG
CTAAGAAGGCAGTCAGCAATAAAGCGCTCGATTGATTTGTTCTTTGAGTATCCATATAAC
AACTTTTTGCACCATCATGTTGAGAATATAATTGTTGCTTGCCTGGAGGGTAAAAGACCT
GAAGTTGTTGAGCATGTTCTTCATGAATGTGATATTGTTGGTAAAATTCTTGTCTCAGAG
AGGTTTTCATCCTTGTCGACTGAGTCTAATGGGCCTACTGTTCCCTCTGAAGGGAAAACC
CCTCCAAGAATTGGAAATGTTGGTCACATGACAAGAATAGCCAATAAACTTATTCAGTTG
GGCAATAGTAACAACACAATCCAGGCTCACTTACAGGAAAATAATGATTGGGTTGAATGG
CAAACAAATGTGCTGGTCAAACGCAATGAAGTGGAGAATGTTTATCATTGGGCTTGTGGG
CGCCCGACATCTTTACATGACCGTGGTAGGGACAGCGATGATGATGACTTCCGGGACAGG
GATTACGACGTGGCAGCTCTTGCTAATAACTTAAGTCAGGCATTTCGTTATGGGATATAT
AGCAACGATGACATTGAAGAGGCACAAGGATCACTTGAACGAGATGATGAGGATGTGTAT
TTTGATGATGAATCAGCTGAGGTTGTAATATCTTCTTTGCGTCTGGGAGATGACCAGGAC
AGCTCCCTCTTTACAAATTCAAATTGGTTCACATTTGATGGAGAGAGAGGCATTGATGAT
CGTTTATCTGCCTCTGTTCCTTCATCATCCCCCAATTCTCTGGAGACTTCACTAGAGGCC
GAGGAAGCTGATGATGGTAAAGTCATTGGCACTGAGGATGAAATGGAAACAGTATATCTT
GGAAATGGTAGTGCTGAGGAGGTAAAAGATGTAGCAGAATGTAATGAACAGCCAAATTGT
TGTACTGAGGATGAGCGATTGAAAAATACTGAAGGGATTGAACGGCATCCAGATGTTTCA
AATCACTATACCGACATATGTACAAATGAGGCTGCCTCTGCTGCAGCAGAATCTTCAGCC
CCATCAGTTGAGATAGTGGCAAAGAAAACAGTAGATGAACCATCGGAGGCAGAAAGAACA
GTGGATGAACCGGCAGAATCATCTTTGGACAGTTCTGTCTCTATACCTTTGCCTGCTCCT
GTTAATGGTAGTGAGCCTGCCAACTCGGAAGCCTCTTCCGAACAAGTTGCCCATGACACT
GATGTGCAGCAACCAGTCAAGGAAGCTCCTGATGAGGACGTTAATGCAAAGAAAACTGAT
GTAGCCAAAGCAAGCGAGTGAATTAGCAACATGTTGGACTGAGCTGATCAGAGCAATTAC
TTGCGAACTGAAAACACTGGAGTGTAGCCTGTGCTCAGCTGCCACAAGATAGCCTGAAGC
AAACTGCTGTACAATAAGCAAGTGATTGTTCTGCCATCAACGGTGGCATATCACTGTACA
AATGAGCACCATTGACTAACGCACATAAGTCGCCTTGTCTGAAACTGGTCATTTTCTTTG
AAATTCACCCTCCAGTTCATGTGCTTTGGTGGCAGACGTCGTGGCATGGTATATGGTACC
TGAGAACATTCTTTGGGTGGCAACTGGTTTTGGCTACTTAGTCTTCTGTTGCCTGTAATA
TGAGATGTGATGTTATTTCTAGTCTAGCTATTGTTGTAATTTTTTTGGACTCTACATGTG