Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044300_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:224506619:224508325:1 gene:Zm00001d044300 gene_biotype:protein_coding transcript_biotype:protein_coding description:PIF / Ping-Pong family of plant transposases
Sequence

ATGTATATGCGACCCCCAACAGCCAACGACCGGCCTCCAAGCGGTGGGGGTGGAGGAGCA
GCAGCTGGTGCAGGTGCAGCAGCAGGGGACGACGACTTCGCCTTCTACTGCTCCTACCTC
CAGGACGCCGACGCTGCCGCCGCCTCAGCGACGTCGACGCTCGCCCTCGCCGTCGACGAC
CCCAACCCCAACCCCAGCGCCGCAGGGATGACGAACGGCCGGCGCCGGAAGCAGCGCGGG
GCAGAGGACGCCGGAGCCGCCGGGGAAGGGGAGGAGGAGGCCAAGAAGGACGGCAAGAAG
CGGTCCATAGCCAAGCTGCTCACCTCGCTGGCGGCGCTGGAGGCGGAGGAGCACGCCGAC
CGCGCGGGCGCCGCGGACGCGTCCAGGCGGGAGCTGGCGCTGCTCGAGTCCAACGCCGAC
ACCCGCTCGCAGGCCACCATGGACTACTACGCCAAGATGGAGAGCAGCTTCGACGCCACC
GCCGAGTCCGAGGCCGCCGCCAGGTCCAAGCGCTCCAGGCTCGCCGCGTCGGCCGCCACC
GCGGCCGTCGTGGCCGGGGAGGAGGCGGCAGCGTCAGCGGCGGCGTCGCCCTCCGCGTCG
GCCTCGCCGACGCGCGCCGCGGGGCAGGGGCAGGGAGGCCACCACCAGCGCCGGCTGTGG
GTCAAGGACCGGTCGCGCGCGTGGTGGGACCGGTGCAACAGCGCCGACTACCCGGAGGAG
GAGTTCCGGCGCGCGTTCCGGATGGGGCGCGGGACCTTCGACATGATCTGCGACGCGCTG
GGCTCCTCGGTGGCCAAGGAGGACACCATGCTCCGCGCCGCCATCCCCGTCCGCCAGCGC
GTCGCCGTCTGCGTCTGGCGCCTCGCCACGGGGGAGCCGCTCCGCCTCGTTTCCAAGCGC
TTCGGCCTCGGCATCTCCACCTGCCACAAGCTCGTCCTGGAGGTGTGCGCCGCCATCAAG
TCCGTGCTCATGCCGCGCTTCCTGCAGTGGCCCGACGCCGACGCCGCGGCGCGCTTCAAG
GAGGGCTTCGAGCGCGCCTCGGGCGTGCCGGGCGTCATCGGCGCCATGTACACCACCCAC
ATCCCCATCATCGCGCCCAAGATCTCGGTGGCGGCCTACTTCAACCGCCGCCACACGGAG
CGCAACCAGAAGACGTCCTACTCCATCACTCTCCAGGGCGTCGTCGGCCCCGACGGCGCC
TTCACCGACGTCTGCATCGGCTGGCCCGGCTCCATGCCCGACGACCAGGTCCTGGAGAAG
TCCATGCTCCACCAGCGCGCCGCGGCGGGGATGATGCACGACTCGTGGCTGGTGGCTGGC
GCCAGCTACCCGCTCATGGACTGGGTGCTGGTGCCGTACACGCACCCCAACCTGACGTGG
ACGCAGCACGCGTTCAACGAGAAGGTGGCCGAGCTCCGGCGCGTCGCGGTGGAGGCGTTC
GCGCGCCTCAAGGCGCGCTGGGCGTGCCTGCAGAAGCGCACCGAGGTCAAGCTGCAGGAC
CTCCCCGTCGTGCTGGGCGCCTGCTGCGTGCTCCACAACATCTGCGAGATTCGGGGCGAG
GAGGTGGACCCAGCCATCCGCTGCGAACTGGTGGACGACGAGACCACGCCGGAGAACCCC
GTGCGCTCCGAGACGGCCAGTCGCGCCAGGGACAACATCGCGCACAACCTGCTCCACCGT
GGCTTGGGCGGCAACACATTCTTCTGA

Peptide Sequence

PEP ID

Zm00001d044300_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:224506619:224508325:1 gene:Zm00001d044300 transcript:Zm00001d044300_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:PIF / Ping-Pong family of plant transposases
Sequence

MYMRPPTANDRPPSGGGGGAAAGAGAAAGDDDFAFYCSYLQDADAAAASATSTLALAVDD
PNPNPSAAGMTNGRRRKQRGAEDAGAAGEGEEEAKKDGKKRSIAKLLTSLAALEAEEHAD
RAGAADASRRELALLESNADTRSQATMDYYAKMESSFDATAESEAAARSKRSRLAASAAT
AAVVAGEEAAASAAASPSASASPTRAAGQGQGGHHQRRLWVKDRSRAWWDRCNSADYPEE
EFRRAFRMGRGTFDMICDALGSSVAKEDTMLRAAIPVRQRVAVCVWRLATGEPLRLVSKR
FGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDADAAARFKEGFERASGVPGVIGAMYTTH
IPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVVGPDGAFTDVCIGWPGSMPDDQVLEK
SMLHQRAAAGMMHDSWLVAGASYPLMDWVLVPYTHPNLTWTQHAFNEKVAELRRVAVEAF
ARLKARWACLQKRTEVKLQDLPVVLGACCVLHNICEIRGEEVDPAIRCELVDDETTPENP
VRSETASRARDNIAHNLLHRGLGGNTFF

Transcript Sequence

Transcript ID

Zm00001d044300_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:224506619:224508325:1 gene:Zm00001d044300 gene_biotype:protein_coding transcript_biotype:protein_coding description:PIF / Ping-Pong family of plant transposases
Sequence

ATGTATATGCGACCCCCAACAGCCAACGACCGGCCTCCAAGCGGTGGGGGTGGAGGAGCA
GCAGCTGGTGCAGGTGCAGCAGCAGGGGACGACGACTTCGCCTTCTACTGCTCCTACCTC
CAGGACGCCGACGCTGCCGCCGCCTCAGCGACGTCGACGCTCGCCCTCGCCGTCGACGAC
CCCAACCCCAACCCCAGCGCCGCAGGGATGACGAACGGCCGGCGCCGGAAGCAGCGCGGG
GCAGAGGACGCCGGAGCCGCCGGGGAAGGGGAGGAGGAGGCCAAGAAGGACGGCAAGAAG
CGGTCCATAGCCAAGCTGCTCACCTCGCTGGCGGCGCTGGAGGCGGAGGAGCACGCCGAC
CGCGCGGGCGCCGCGGACGCGTCCAGGCGGGAGCTGGCGCTGCTCGAGTCCAACGCCGAC
ACCCGCTCGCAGGCCACCATGGACTACTACGCCAAGATGGAGAGCAGCTTCGACGCCACC
GCCGAGTCCGAGGCCGCCGCCAGGTCCAAGCGCTCCAGGCTCGCCGCGTCGGCCGCCACC
GCGGCCGTCGTGGCCGGGGAGGAGGCGGCAGCGTCAGCGGCGGCGTCGCCCTCCGCGTCG
GCCTCGCCGACGCGCGCCGCGGGGCAGGGGCAGGGAGGCCACCACCAGCGCCGGCTGTGG
GTCAAGGACCGGTCGCGCGCGTGGTGGGACCGGTGCAACAGCGCCGACTACCCGGAGGAG
GAGTTCCGGCGCGCGTTCCGGATGGGGCGCGGGACCTTCGACATGATCTGCGACGCGCTG
GGCTCCTCGGTGGCCAAGGAGGACACCATGCTCCGCGCCGCCATCCCCGTCCGCCAGCGC
GTCGCCGTCTGCGTCTGGCGCCTCGCCACGGGGGAGCCGCTCCGCCTCGTTTCCAAGCGC
TTCGGCCTCGGCATCTCCACCTGCCACAAGCTCGTCCTGGAGGTGTGCGCCGCCATCAAG
TCCGTGCTCATGCCGCGCTTCCTGCAGTGGCCCGACGCCGACGCCGCGGCGCGCTTCAAG
GAGGGCTTCGAGCGCGCCTCGGGCGTGCCGGGCGTCATCGGCGCCATGTACACCACCCAC
ATCCCCATCATCGCGCCCAAGATCTCGGTGGCGGCCTACTTCAACCGCCGCCACACGGAG
CGCAACCAGAAGACGTCCTACTCCATCACTCTCCAGGGCGTCGTCGGCCCCGACGGCGCC
TTCACCGACGTCTGCATCGGCTGGCCCGGCTCCATGCCCGACGACCAGGTCCTGGAGAAG
TCCATGCTCCACCAGCGCGCCGCGGCGGGGATGATGCACGACTCGTGGCTGGTGGCTGGC
GCCAGCTACCCGCTCATGGACTGGGTGCTGGTGCCGTACACGCACCCCAACCTGACGTGG
ACGCAGCACGCGTTCAACGAGAAGGTGGCCGAGCTCCGGCGCGTCGCGGTGGAGGCGTTC
GCGCGCCTCAAGGCGCGCTGGGCGTGCCTGCAGAAGCGCACCGAGGTCAAGCTGCAGGAC
CTCCCCGTCGTGCTGGGCGCCTGCTGCGTGCTCCACAACATCTGCGAGATTCGGGGCGAG
GAGGTGGACCCAGCCATCCGCTGCGAACTGGTGGACGACGAGACCACGCCGGAGAACCCC
GTGCGCTCCGAGACGGCCAGTCGCGCCAGGGACAACATCGCGCACAACCTGCTCCACCGT
GGCTTGGGCGGCAACACATTCTTCTGA