Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044281_T056
CDS Infomation

cds chromosome:B73_RefGen_v4:3:223989283:224011923:1 gene:Zm00001d044281 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chromatin modification-related protein EAF1 B
Sequence

ATGATAGCTCAGTATGAGCAGAAGGATTATATTAAAAAGAGACAGGAGACAAATGGGAAT
TTTGTGGTTAATGGCCTACATGCTGCTAAGAAGCCTAAATTGTTGAATCAAGCACCAGAT
ATTTCACTGGAAGCTCTTAAACCAATTGGTCCAATGGCCTCTCTTGCTGCATCACAAATG
AGCAACATGGCAAATCCTACGAGGGTTATAAAAATCAGCACCCGTGGAAGAAAAAGTAAA
GGACTCAAGATGCGAGCTGGTCATTCAGGTCCTGGAAGTCCATGGTCAAGTTTTGAGGAT
CAGGCTCTTGTTGTCCTTGTCCATGATATGGGTGAAAACTGGGAATTGGTTAGTGATGCC
CTTAACAGCATCATCCAATTGAAGTGCATATACAGAAGGCCTAATGAGTGTAAGGAACGC
CATAAACTTCTCACCGATAGAAGTTGTGGCGACGGTGCTGACAGCGCTGATGACTCAGGC
TCATCTCAACACTATCCTTCTGCATTGCCTGGGATTCCAAAGGGTAGTGCAAGGCAACTG
TTTCAGCGCCTTCAAGGACCGTTTGAGGAAGGGACTCTCAAGACACACTTCGAGAAAATA
ATATTGCTTGGTCAAAAATTGCATCAAACTCGTAGAAAGGATGAGATCCATGAGCTGAGG
CAAAAAAATCCACTTCATACTTCTCATGGTTTTGCACTTTCTCAAGCATGTCCAGGGAAC
TTATCTGGTGTCATTTTGACGCCACTTGACCTTTGCGATGGACCTTCGAACTCGGATGCA
CTTACAGGATCCAATACAAGTGGGTTAGGTCTTTCAAACAATAACTGCTCTGTTGGTCCT
ACTCTTCCTACATCAAATATGAACTTAAGATTACCAGGTTCTCCTGGTATGGTTTTGGGA
AGCAATTCACCATTGCCTTTGAATGCTCCCTCTAGGGATGTTCAGAGGTATGGTGTGCCT
AGACCAACCTCGATACAGGGTGACGAGCAATCAAGAATTCATTATAACCAGATGGTAAAT
GGCAGAAACCTTCAGCAACCTGGAGTTCCTGTTCCTGGTGTGTTGCCATCTGGTGTTGAT
CGGGGTGCCCGAATGATGCCACCTGCCCATGGTGTTGGAATCATGGCTGGACTAAATCGA
GGTACACCTATTACTAGGCCAGGTTTTCCAAGGCTTGGTTCTCTTGGAAACATGTCACCC
ACCGATGGTCAAGGCTTAAAAAATACTGTAAACGTTCATCCTGGTGCCATACTGGGACCT
GGAAGTACTATGTTGAGGCCACGTGACCCAATGCAGATGTTTAGACCTGGCCAGAATTCA
GAGGAGCATAGACAGATGATGATGCCAGAGTTTCAGTTACAAGTCTCGCAAGGAAATAAT
CATGCTGTGCATTTCAGCGGTCCACCATATTCCAACACTGGGGCATCTTCACCTGTTCAA
TCTTTACCTGCCCAGCAGTCCCAACCACATCAGATGCCACAACAATCACACATGTATGGA
AACACACACCTTCTTCATACCCAAGGAACAAACCAGTCAAATCCACAGCAACAGCAGGCT
TATGCTATGCGCTTGGCCAAAGAGAGGCATATGCAACAGATGATGCCCCAACAACAGCGT
CCATTATCTGTTGCCAGTGCAGTGTCAGCTGTACAGAATGGCTCACCGATGCAACAGCAG
AGCCAAGGATCTGCAACTTGCGTAATCCCAGCTACACAGACACAACATAAGCAGCAATAT
CCTGCACAAAATGCACAAGATAACTCAATGCTTCCCCATCAGCCTTCAGCCACCACTACA
CATAAACAGAAGAAGCAACAGGGCCAGCAGCAGCCTAGACAAAATCAACAGCAACGAAAT
CAAGGCAGTCAACAAGCTAAGCTTATGAAGAGTTTAGGCCGAGGGAACATGATGCAGCAG
AGTCCTGTGGATGTTATTCAAGCAAGTGGCATATCAACAAGCTGTAAAGATCAAGTTCCT
GATAAGAATATGATGCAACAGGGTCCAGGGCATTTTGTTGTAAGTAAAGGATCAATCCCA
TTGATACCTCAACCTGGGAATCAACCAAATGTATACACTTCTCAGATGCCTCCGTCTCCA
ATGCAGACACCGGATATTAGTAATCAGGGTGCAGTCAAGGGTTCTTCCAACCATGCCTTG
TTAACTTCCCAGCAAGGTTCACTCCATACGCCTTCACAGTTGGCACAGCAGCAGCAGCAG
CAACTACGGTTCATGAATCCGTCACAGAATAATATGCAAAGGTTGATAATGCAACAGAAT
CGGCATGTGAACACAGATGGCAGGATTGAGTTACCTGCTGACCAAGTACAGCATAACCAG
GTAATGTCATCTGCCTCACTTGCAAGAAGTACAGATTCAGGCAGCCCAGGAATCTCATCT
ATAAGCCAGCGGAAACAAGAGTCATCTCATGACCCAAGTGCAATTACCTCAACCTCGCAG
CTAGCTAGCTCACCTCAAGACACCTTTGTTGGAAGTGATAGGGTGTTGCCATCATCCAGC
CAAAGCATGCCGCAAAGGCAAATGTCCGGTGGTGTGCCTGTACATGGATATGGCATTGGT
GGCCAGGTGCAGCTACAACAGTCTCGGCAGCAACTCCAGTCTCAGCAGCAGCAGCAGCAG
CAGCAGAGGCCTGTTGTCCAAGGTGGTGTATATGCTCACCCCTCAAATTCAGGACAAGGA
TGA

Peptide Sequence

PEP ID

Zm00001d044281_P056
PEP Infomation

pep chromosome:B73_RefGen_v4:3:223989283:224011923:1 gene:Zm00001d044281 transcript:Zm00001d044281_T056 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chromatin modification-related protein EAF1 B
Sequence

MIAQYEQKDYIKKRQETNGNFVVNGLHAAKKPKLLNQAPDISLEALKPIGPMASLAASQM
SNMANPTRVIKISTRGRKSKGLKMRAGHSGPGSPWSSFEDQALVVLVHDMGENWELVSDA
LNSIIQLKCIYRRPNECKERHKLLTDRSCGDGADSADDSGSSQHYPSALPGIPKGSARQL
FQRLQGPFEEGTLKTHFEKIILLGQKLHQTRRKDEIHELRQKNPLHTSHGFALSQACPGN
LSGVILTPLDLCDGPSNSDALTGSNTSGLGLSNNNCSVGPTLPTSNMNLRLPGSPGMVLG
SNSPLPLNAPSRDVQRYGVPRPTSIQGDEQSRIHYNQMVNGRNLQQPGVPVPGVLPSGVD
RGARMMPPAHGVGIMAGLNRGTPITRPGFPRLGSLGNMSPTDGQGLKNTVNVHPGAILGP
GSTMLRPRDPMQMFRPGQNSEEHRQMMMPEFQLQVSQGNNHAVHFSGPPYSNTGASSPVQ
SLPAQQSQPHQMPQQSHMYGNTHLLHTQGTNQSNPQQQQAYAMRLAKERHMQQMMPQQQR
PLSVASAVSAVQNGSPMQQQSQGSATCVIPATQTQHKQQYPAQNAQDNSMLPHQPSATTT
HKQKKQQGQQQPRQNQQQRNQGSQQAKLMKSLGRGNMMQQSPVDVIQASGISTSCKDQVP
DKNMMQQGPGHFVVSKGSIPLIPQPGNQPNVYTSQMPPSPMQTPDISNQGAVKGSSNHAL
LTSQQGSLHTPSQLAQQQQQQLRFMNPSQNNMQRLIMQQNRHVNTDGRIELPADQVQHNQ
VMSSASLARSTDSGSPGISSISQRKQESSHDPSAITSTSQLASSPQDTFVGSDRVLPSSS
QSMPQRQMSGGVPVHGYGIGGQVQLQQSRQQLQSQQQQQQQQRPVVQGGVYAHPSNSGQG

Transcript Sequence

Transcript ID

Zm00001d044281_T056
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:223989283:224011923:1 gene:Zm00001d044281 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chromatin modification-related protein EAF1 B
Sequence

AGGGCAATTATGATCATAGATCTCAGATCGATATGATAGCTCAGTATGAGCAGAAGGATT
ATATTAAAAAGAGACAGGAGACAAATGGGAATTTTGTGGTTAATGGCCTACATGCTGCTA
AGAAGCCTAAATTGTTGAATCAAGCACCAGATATTTCACTGGAAGCTCTTAAACCAATTG
GTCCAATGGCCTCTCTTGCTGCATCACAAATGAGCAACATGGCAAATCCTACGAGGGTTA
TAAAAATCAGCACCCGTGGAAGAAAAAGTAAAGGACTCAAGATGCGAGCTGGTCATTCAG
GTCCTGGAAGTCCATGGTCAAGTTTTGAGGATCAGGCTCTTGTTGTCCTTGTCCATGATA
TGGGTGAAAACTGGGAATTGGTTAGTGATGCCCTTAACAGCATCATCCAATTGAAGTGCA
TATACAGAAGGCCTAATGAGTGTAAGGAACGCCATAAACTTCTCACCGATAGAAGTTGTG
GCGACGGTGCTGACAGCGCTGATGACTCAGGCTCATCTCAACACTATCCTTCTGCATTGC
CTGGGATTCCAAAGGGTAGTGCAAGGCAACTGTTTCAGCGCCTTCAAGGACCGTTTGAGG
AAGGGACTCTCAAGACACACTTCGAGAAAATAATATTGCTTGGTCAAAAATTGCATCAAA
CTCGTAGAAAGGATGAGATCCATGAGCTGAGGCAAAAAAATCCACTTCATACTTCTCATG
GTTTTGCACTTTCTCAAGCATGTCCAGGGAACTTATCTGGTGTCATTTTGACGCCACTTG
ACCTTTGCGATGGACCTTCGAACTCGGATGCACTTACAGGATCCAATACAAGTGGGTTAG
GTCTTTCAAACAATAACTGCTCTGTTGGTCCTACTCTTCCTACATCAAATATGAACTTAA
GATTACCAGGTTCTCCTGGTATGGTTTTGGGAAGCAATTCACCATTGCCTTTGAATGCTC
CCTCTAGGGATGTTCAGAGGTATGGTGTGCCTAGACCAACCTCGATACAGGGTGACGAGC
AATCAAGAATTCATTATAACCAGATGGTAAATGGCAGAAACCTTCAGCAACCTGGAGTTC
CTGTTCCTGGTGTGTTGCCATCTGGTGTTGATCGGGGTGCCCGAATGATGCCACCTGCCC
ATGGTGTTGGAATCATGGCTGGACTAAATCGAGGTACACCTATTACTAGGCCAGGTTTTC
CAAGGCTTGGTTCTCTTGGAAACATGTCACCCACCGATGGTCAAGGCTTAAAAAATACTG
TAAACGTTCATCCTGGTGCCATACTGGGACCTGGAAGTACTATGTTGAGGCCACGTGACC
CAATGCAGATGTTTAGACCTGGCCAGAATTCAGAGGAGCATAGACAGATGATGATGCCAG
AGTTTCAGTTACAAGTCTCGCAAGGAAATAATCATGCTGTGCATTTCAGCGGTCCACCAT
ATTCCAACACTGGGGCATCTTCACCTGTTCAATCTTTACCTGCCCAGCAGTCCCAACCAC
ATCAGATGCCACAACAATCACACATGTATGGAAACACACACCTTCTTCATACCCAAGGAA
CAAACCAGTCAAATCCACAGCAACAGCAGGCTTATGCTATGCGCTTGGCCAAAGAGAGGC
ATATGCAACAGATGATGCCCCAACAACAGCGTCCATTATCTGTTGCCAGTGCAGTGTCAG
CTGTACAGAATGGCTCACCGATGCAACAGCAGAGCCAAGGATCTGCAACTTGCGTAATCC
CAGCTACACAGACACAACATAAGCAGCAATATCCTGCACAAAATGCACAAGATAACTCAA
TGCTTCCCCATCAGCCTTCAGCCACCACTACACATAAACAGAAGAAGCAACAGGGCCAGC
AGCAGCCTAGACAAAATCAACAGCAACGAAATCAAGGCAGTCAACAAGCTAAGCTTATGA
AGAGTTTAGGCCGAGGGAACATGATGCAGCAGAGTCCTGTGGATGTTATTCAAGCAAGTG
GCATATCAACAAGCTGTAAAGATCAAGTTCCTGATAAGAATATGATGCAACAGGGTCCAG
GGCATTTTGTTGTAAGTAAAGGATCAATCCCATTGATACCTCAACCTGGGAATCAACCAA
ATGTATACACTTCTCAGATGCCTCCGTCTCCAATGCAGACACCGGATATTAGTAATCAGG
GTGCAGTCAAGGGTTCTTCCAACCATGCCTTGTTAACTTCCCAGCAAGGTTCACTCCATA
CGCCTTCACAGTTGGCACAGCAGCAGCAGCAGCAACTACGGTTCATGAATCCGTCACAGA
ATAATATGCAAAGGTTGATAATGCAACAGAATCGGCATGTGAACACAGATGGCAGGATTG
AGTTACCTGCTGACCAAGTACAGCATAACCAGGTAATGTCATCTGCCTCACTTGCAAGAA
GTACAGATTCAGGCAGCCCAGGAATCTCATCTATAAGCCAGCGGAAACAAGAGTCATCTC
ATGACCCAAGTGCAATTACCTCAACCTCGCAGCTAGCTAGCTCACCTCAAGACACCTTTG
TTGGAAGTGATAGGGTGTTGCCATCATCCAGCCAAAGCATGCCGCAAAGGCAAATGTCCG
GTGGTGTGCCTGTACATGGATATGGCATTGGTGGCCAGGTGCAGCTACAACAGTCTCGGC
AGCAACTCCAGTCTCAGCAGCAGCAGCAGCAGCAGCAGAGGCCTGTTGTCCAAGGTGGTG
TATATGCTCACCCCTCAAATTCAGGACAAGGATGATGCTGAACCATACTGGGCCTGCATT
TCTGAAGAGCCTCCCTTCCCCTTGTAAAGTTACCTGTACAGGCGTCCGTGCTGTGGAAGA
TGTGTGCGGATGATAGTGCTCTTTATTCCCAACTTTGAGCTAACTGTAGCCTCCTCGGTG
TCAGGTAGATAATTATTTCTCCTCACCATTTTGGTGCCACACTGCTACCTTCCATGTAGT
TTGACCCTAGGTTGCTGGAGGTGGTTCTTGTGAGGGCAAACTCCTTGAGTCGTCAAATTG
TAACCACGACACTGGGCCCAGTTGTATATTTTTGCCGTTGAGGTCCATGTTAGAGGCAAT
CTCTTTTGTATAAGCCTGTATATTCAGCTCACAAGCCAGTCAATGAATGCAAAGCCTTTC
TTTGCGTCAAACCAGGAATGTAAAAA