Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044271_T016
CDS Infomation	cds chromosome:B73_RefGen_v4:3:223463714:223469120:1 gene:Zm00001d044271 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT HAIR DEFECTIVE 3
Sequence	ATGATGAGGTTGTTCAGTCCTCGTAAAACAACATTGTTGTTTGTCATTCGTGACAAATCA AGGACACCCCTAGAAAATCTTGAACCAATTTTAAGGGAAGACATTCAGAAGATATGGGAT GCTGTTCCAAAACCCCATGCCCATAAAGAAACTCCACTTAGCGAATTTTTCGATGTACAA GTTGTGGCACTGTCCAGTTATGAAGAAAAAGAAGAGTTGTTCAAACAGCAGGTTTCTGAT TTAAGAGATAGGTTTCAGTATTCTATCGCTCCTGGTGGACTTGCTGGGGATCGTCGTGGT GTCGTCCCAGCTTCAGGATTCTCGTTTAGTTCCCAGCAATTTTGGAAAGTCATTAAGGAG AACAAAGACCTTGATCTGCCTGCTCATAAAGTTATGGTTGCTACTGTACGTTGTGAGGAA ATTGGTAATGAGAAAGTCGGCAGTTTTACATCTGATGAGGAATGGCAACAATTAGAGGAG GCTGTTCAACATGACTTTGTTCCTGGATTTGGGAAGAAGATCAGCAGCCTTCTTGATAGA TGTTTATCAGAGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAAGCTCTAAA CGGCAACAGCTTGAGTCTAAACTCCTACAGCTTGTCAATCCTGCCTATCAATCTCTTCTA GGTCACTTGCGTACTAGAACTTTAGAAGCATTTAATGAGTCCTTTGACAAGGCTCTAGAA AAGGAGGGATTTGCTGCAGCCGCTCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGAT AAAGGATCTGAAGATGCTGCTATTCAACAAGTGAATTGGGACACCTCAAAAGTGAAGGAT AAGCTTAGACGTGACATTGAGGCTCATGTAGCTTCAGTTCGAGCTGCTAAATTATCTGAA CTTTGTGCCAAATATGAGGCACAACTTACCAAAGCTCTGGCGGAACCAGTTGAATCTCTT CTAGATTCAGCCAGTGAAGATACGTGGCCAGCTATTAGAAAGCTTCTTCAACGCGAGACA AAAACTGCCGTTTCAGGTCTTCAATCTGCTGTGTCAGCTTTTGAACTTGATGAAGCAACT GAGAAAGAACTGCTTGTGAAGCTGGAGAAGCATGGAAGGAGTGTTGTTGAGTCAAAGGCA AAAGAAGAAGCTGGAAGGGTTTTGATTCGCATGAAGGACAGGTTTTCAATGCTGTTCAGC CGAGATGCTGACTCTATGCCCAGGGTGTGGACAGGAAAGGAGGACATAAAAGCTATAACT AAAACCGCTCGCTCAGCTTCCATGAAGTTGCTTTCTACAATGGCTGCAATTCGGTTGGAG GAGGATGGTGATAACATTGAGAACACTCTTTCCGTTGCTCTTGTTGACACCTCAAAACCT GGGACTACTGATAGGAGTATCCAATTGACCGATCCACTTGCCTCCAGTTCATGGGAAAGG GTTGGCGAGGAGAAGACTTTAATTACCCCTGTGCAGTGCAAAAATTTGTGGAGGCAATTC AAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAGGAAGCAAATAAGAGG AACAACAACTGGCTACCACCTCCATGGGCACTTGCTGCAATGGCTATTCTTGGATTCAAC GAGTTCATGACATTACTGAGGAACCCGCTTTACCTGTTTGCCATATTTGTGATTTATCTC GTTGGAAAAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTTCTT CCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAACATCCTGAAGAGA TTAGCCGACGAGGGTCAAGCACCTGCAGCCGCCCCAGAGAGGCAGAGAGAGATGGAGCTC CAACCAAAACCCACCAGGAACGGTTCTTCATACACCAACGCGACGTCGGCGGGGTCATCC AGCGTAACCACTTCGGAGATCGGACCTGAGTATTCGAGCCCGGTGGCGCAATGA

Peptide Sequence

PEP ID	Zm00001d044271_P016
PEP Infomation	pep chromosome:B73_RefGen_v4:3:223463714:223469120:1 gene:Zm00001d044271 transcript:Zm00001d044271_T016 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT HAIR DEFECTIVE 3
Sequence	MMRLFSPRKTTLLFVIRDKSRTPLENLEPILREDIQKIWDAVPKPHAHKETPLSEFFDVQ VVALSSYEEKEELFKQQVSDLRDRFQYSIAPGGLAGDRRGVVPASGFSFSSQQFWKVIKE NKDLDLPAHKVMVATVRCEEIGNEKVGSFTSDEEWQQLEEAVQHDFVPGFGKKISSLLDR CLSEYDMEAIYFDEGVRSSKRQQLESKLLQLVNPAYQSLLGHLRTRTLEAFNESFDKALE KEGFAAAARNCTQTFLEKFDKGSEDAAIQQVNWDTSKVKDKLRRDIEAHVASVRAAKLSE LCAKYEAQLTKALAEPVESLLDSASEDTWPAIRKLLQRETKTAVSGLQSAVSAFELDEAT EKELLVKLEKHGRSVVESKAKEEAGRVLIRMKDRFSMLFSRDADSMPRVWTGKEDIKAIT KTARSASMKLLSTMAAIRLEEDGDNIENTLSVALVDTSKPGTTDRSIQLTDPLASSSWER VGEEKTLITPVQCKNLWRQFKAETEYTVTQALAAQEANKRNNNWLPPPWALAAMAILGFN EFMTLLRNPLYLFAIFVIYLVGKAIWVQSEIGREFQHGFLPAILSLSTKFVPTVMNILKR LADEGQAPAAAPERQREMELQPKPTRNGSSYTNATSAGSSSVTTSEIGPEYSSPVAQ

Transcript Sequence

Transcript ID	Zm00001d044271_T016
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:223463714:223469120:1 gene:Zm00001d044271 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT HAIR DEFECTIVE 3
Sequence	TTTCTTATCTAGGTGGTGTCATGACATTGGTAGAGAACAGGCTGCAAACAAGCCTCTTTT GAAGACTGTTTTCCAGGTCATGATGAGGTTGTTCAGTCCTCGTAAAACAACATTGTTGTT TGTCATTCGTGACAAATCAAGGACACCCCTAGAAAATCTTGAACCAATTTTAAGGGAAGA CATTCAGAAGATATGGGATGCTGTTCCAAAACCCCATGCCCATAAAGAAACTCCACTTAG CGAATTTTTCGATGTACAAGTTGTGGCACTGTCCAGTTATGAAGAAAAAGAAGAGTTGTT CAAACAGCAGGTTTCTGATTTAAGAGATAGGTTTCAGTATTCTATCGCTCCTGGTGGACT TGCTGGGGATCGTCGTGGTGTCGTCCCAGCTTCAGGATTCTCGTTTAGTTCCCAGCAATT TTGGAAAGTCATTAAGGAGAACAAAGACCTTGATCTGCCTGCTCATAAAGTTATGGTTGC TACTGTACGTTGTGAGGAAATTGGTAATGAGAAAGTCGGCAGTTTTACATCTGATGAGGA ATGGCAACAATTAGAGGAGGCTGTTCAACATGACTTTGTTCCTGGATTTGGGAAGAAGAT CAGCAGCCTTCTTGATAGATGTTTATCAGAGTATGACATGGAGGCTATTTATTTTGATGA AGGTGTCAGAAGCTCTAAACGGCAACAGCTTGAGTCTAAACTCCTACAGCTTGTCAATCC TGCCTATCAATCTCTTCTAGGTCACTTGCGTACTAGAACTTTAGAAGCATTTAATGAGTC CTTTGACAAGGCTCTAGAAAAGGAGGGATTTGCTGCAGCCGCTCGCAATTGTACTCAAAC TTTCTTGGAGAAGTTTGATAAAGGATCTGAAGATGCTGCTATTCAACAAGTGAATTGGGA CACCTCAAAAGTGAAGGATAAGCTTAGACGTGACATTGAGGCTCATGTAGCTTCAGTTCG AGCTGCTAAATTATCTGAACTTTGTGCCAAATATGAGGCACAACTTACCAAAGCTCTGGC GGAACCAGTTGAATCTCTTCTAGATTCAGCCAGTGAAGATACGTGGCCAGCTATTAGAAA GCTTCTTCAACGCGAGACAAAAACTGCCGTTTCAGGTCTTCAATCTGCTGTGTCAGCTTT TGAACTTGATGAAGCAACTGAGAAAGAACTGCTTGTGAAGCTGGAGAAGCATGGAAGGAG TGTTGTTGAGTCAAAGGCAAAAGAAGAAGCTGGAAGGGTTTTGATTCGCATGAAGGACAG GTTTTCAATGCTGTTCAGCCGAGATGCTGACTCTATGCCCAGGGTGTGGACAGGAAAGGA GGACATAAAAGCTATAACTAAAACCGCTCGCTCAGCTTCCATGAAGTTGCTTTCTACAAT GGCTGCAATTCGGTTGGAGGAGGATGGTGATAACATTGAGAACACTCTTTCCGTTGCTCT TGTTGACACCTCAAAACCTGGGACTACTGATAGGAGTATCCAATTGACCGATCCACTTGC CTCCAGTTCATGGGAAAGGGTTGGCGAGGAGAAGACTTTAATTACCCCTGTGCAGTGCAA AAATTTGTGGAGGCAATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGC TCAGGAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCTGCAAT GGCTATTCTTGGATTCAACGAGTTCATGACATTACTGAGGAACCCGCTTTACCTGTTTGC CATATTTGTGATTTATCTCGTTGGAAAAGCCATTTGGGTGCAATCAGAAATCGGCAGGGA ATTCCAACACGGATTTCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGT AATGAACATCCTGAAGAGATTAGCCGACGAGGGTCAAGCACCTGCAGCCGCCCCAGAGAG GCAGAGAGAGATGGAGCTCCAACCAAAACCCACCAGGAACGGTTCTTCATACACCAACGC GACGTCGGCGGGGTCATCCAGCGTAACCACTTCGGAGATCGGACCTGAGTATTCGAGCCC GGTGGCGCAATGATTTAGCTGACCTTTAGCCTTTGGCTGGAAGCCCACTCTAGCGCAGTT GAGGGAAACAGGGTGCCTCTCGAGAACATAGGAACTTAGGAAGATTTTAAGGACAGTCAG GTGCCTTGCAGTTTTTTCTAAGCCTGCCCTTCCCCCAAACTGATGCAAGGTGGTGATGGG GTGGCACTGCCCATCACTATTATTTAAGGATTTTTGGGGGCTGGGGGGGTTGTTTGTAAG AGCATTGTAGAATGATTTCGTTTAATTTTTTTGGTTTCTGTAACATGAATACATGATATG TGATGGTTGTATAGAAGATCTGGGGGGCGTAGTAGTGCCCATTCTACACAGCTTATACTG GGCAGGGGGTTGCATAGTTGCCAGAAGCTTGTACATGTCTTTAAACCGCCATCGGATTGC GATGGAGTAG