Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044250_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:3:223045592:223050535:1 gene:Zm00001d044250 gene_biotype:protein_coding transcript_biotype:protein_coding description:Carbamoyl-phosphate synthase large chain chloroplastic
Sequence	ATGGCCACCTCGCTCTACACCCCGTCCCAGCTCCGCCCCTCCCACTCCCAGGCCCGCCGC CTCGGCTCGCACCCGCGCGTCTGCTCCGCGCGCTGCCCCGCCCGCCGCCGCCGCGCCGCC GCCATCTCCGTGCGCGCTTCCACCGATGGCGACGCCGCCGTCACGGTGCGCCGCTTCCCG GCCGCGCCGACCAAGGCCGGGGGCCTCTCGGGCGTAAAGAAGATCATGATCCTCGGCGCG GGGCCCATCGTCATCGGGCAGGCGTGCGAGTTCGACTACTCCGGCACGCAGGCGTGCAAG GCGCTGGTGGAGGAGGGCTACGAGGTGGTGCTCGTCAACTCCAACCCGGCCACCATCATG ACCGACCCGGGGCTCGCCCACCGCACCTACATAGGGCCCATGACGCCGACGCTCGTCGAG CGCATCATCGACGCCGAGCGCCCCGACGCGCTGCTCCCCACCATGGGCGGCCAGACCGCG CTCAACCTAGCGGTCTCGCTTGCCGACTCGGGCGCGCTCGACCGCCTCGGGGTGCGCCTT ATCGGGGCCTCCCTCCCCGCCATCCGCGCCGCCGAGGACAGGCAGCTCTTCAAGCAGGCC ATGGACCGCATCGGCCTCCAGACGCCGCCCTCCGGCATCGGCACCACGCTGGAGGAGTGC CTCACCATCGCTGAGGACATCGGGGAGTTCCCGCTCATTGTTCGTCCGGCCTTCACTCTC GGTGGCACGGGCGGAGGCATCGCCTACAACAGGGCCGAGTTTGAGGACATATGCAGGGCC GGCCTTACCGCGTCGCACACTCAGCAGGTGCTCGTCGAGAAGTCGCTGCTCGGCTGGAAG GAGTACGAGCTGGAAGTCATGCGCGACATGGCTGACAATGTCGTCATCATCTGCTCCATC GAGAACATTGATCCCATGGGCGTGCACACGGGGGACTCCATCACCGTCGCGCCTGCGCAG ACACTCACGGACAAGGAGTACCAGAGGCTTAGGGACTACTCGGTGGCCATCATCCGTGAG ATTGGTGTGGAGTGTGGTGGTTCCAATGTGCAATTCGCGGTCAATCCTGCAGATGGGGAG GTGATGGTCATCGAGATGAATCCCAGGGTGTCCAGGTCGTCCGCACTTGCCTCAAAGGCG ACAGGGTTTCCCATAGCCAAGATGGCTGCAAAGCTGTCAGTAGGCTACACTCTGGACCAG ATTCCCAATGATATTACCAAGAAGACTCCTGCTTTTGAGAAATTCCCTGGCTCTGAGCCA ATATTAACCACACAGATGAAGTCTGTTGGTGAGGCGATGGCACTGGGGCGTACCTTCCAG GAGTCCTTCCAGAAAGCTGTCCGCTCACTGGAGACTGGTTTTGCGGGATGGGGTTGTGGC CCTATCAAGGAACTTGACTGGGACTGGGAACAGATAAAATATAGCTTGCGGGTACCTAAT CCAGATCGTATCCATGCTATCTATGCAGCTTTCAAGAAAGGCATGAGGGTCGAAGATATC CACGAAATTAGCTTCATTGACAAATGGTTTCTTACAGAGCTCAGGGAACTAGTGGATGTT GAGCAGTTCCTTTTATCAAGAAGCCTAGATCAATTGTCAAAGGATGACTTTTATCAAGTG AAGAGGAGGGGATTCAGTGACAAGCAGATTGCATTTGCAACTTCCTCATCAGAAAGTGAT GTGAGATCAAGACGTTTGGCATTAGGCGTCACTCCGTCATATAAACGTGTTGATACTTGC GCTGCTGAGTTTGAAGCCAACACGCCCTACATGTATTCTTCCTATGAGTACGAATGTGAA TCAGCTCCAACCAATAAGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGC CAGGGCATTGAGTTTGATTACTGCTGTTGCCATGCATCATTTGCACTTCGAGAGGCTGGA TACGAGACTATTATGATGAACTCCAATCCTGAGACAGTCTCTACTGACTATGATACCAGT GATCGTTTGTACTTTGAGCCACTGACAGTTGAGGATGTATTAAATGTCCTTGATTTAGAG CGCCCAGATGGTATAATTGTGCAATTTGGAGGGCAGACTCCATTAAAGCTTGCGCTGCCT ATCCAACAGTACATAGAGGAGAACAAAATGGTTTCTGCTTCAGGCACTGGTAATGTGAAG ATATGGGGAACATCACCAGATTCCATTGATGCTGCTGAGGACAGAAAAAGATTTAATGCA ATTCTTGAGGAGCTTGGAATTGAACAGCCAAAGGGAGGGATTGCAAGAAGTGAGTCTGAT GCATTGGCAATTGCCTCAGAAATAGGCTACCCTGTTGTGGTCCGTCCGTCATATGTTCTT GGTGGACGGGCAATGGAGATTGTGTACAACGATGAAAAGCTGATCAAGTACCTTGCGACT GCAGTGCAAGTAGATCCAGAAAGGCCTGTTTTAGTGGACAAATATCTGATTGATGCAGTT GAAATTGATGTTGATGCATTGGCTGACACAGCTGGGAATGTTGTGATTGGTGGAATTATG GAGCATATCGAGCAAGCTGGCATACATTCAGGCGATTCAGCATGTTCTCTTCCCACTAGA ACAGTCTCAGCCAAGTGCCTAGAAGTCATCCGTTCATGGACCACCAAGCTAGCAAAGTGT CTGAATGTGTGCGGACTAATGAACTGTCAGTATGCTATATCCACTTCTGGTGATGTGTTC TTACTTGAGGCAAACCCTCGTGCATCACGCACAGTCCCTTTTGTATCCAAGGCGATCGGC CATCCGCTAGCCAAGTATGCATCACTGGTGATGTCTGGTGTGACCCTGCCAGAGCTTGGG TTCACTGAAGAAGTGATTCCTAAGCACGTGTCTGTTAAGGAGGCTGTTCTTCCGTTCGAG AAATTTCAAGGGTGTGACATTCTCCTCGGACCAGAGATGCGCAGCACCGGGGAGGTGATG GGCATCGACTACGAGTTCTCCGGTGCCTTTGCAAAGGCGCAGATTGCTGCGGGACAGAAG CTCCCCCTAAGCGGCACCGTGTTCCTTAGCCTGAATGATCTGACGAAACGGCACCTTGCT GAGATCGGGCGTGGGTTCCGGGAGCTTGGCTTCAGCATCGTCGCCACGTCTGGAACAGCC AAAGTGCTCCAGCTCGAGGGCGTCCCGGTGGAGCCGGTACTAAAAATCCATGAGGGGCGG CCAAATGCCAGAGATATGCTGAAGAATGGCCAGATACAGATCATGGTGATAACAAGCTCG GGCGACGCTCTCGACTCCAAAGACGGCCTCCAGCTTCGTCGGCTTGCCCTCGCTTACAAG GTGCCGATCACCACGACCGTGGACGGTGCACGGGCCTCCATCGATGCCATCAAGAGCTTG AAGAACAAGTCGATCGAGATCCTCGCCTTGCAAGATTACTTCCAGACTGCTGATGCTTCG GAGGATTTACAGGCGGTGGCACGAACCGCCCCTTAG

Peptide Sequence

PEP ID	Zm00001d044250_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:3:223045592:223050535:1 gene:Zm00001d044250 transcript:Zm00001d044250_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Carbamoyl-phosphate synthase large chain chloroplastic
Sequence	MATSLYTPSQLRPSHSQARRLGSHPRVCSARCPARRRRAAAISVRASTDGDAAVTVRRFP AAPTKAGGLSGVKKIMILGAGPIVIGQACEFDYSGTQACKALVEEGYEVVLVNSNPATIM TDPGLAHRTYIGPMTPTLVERIIDAERPDALLPTMGGQTALNLAVSLADSGALDRLGVRL IGASLPAIRAAEDRQLFKQAMDRIGLQTPPSGIGTTLEECLTIAEDIGEFPLIVRPAFTL GGTGGGIAYNRAEFEDICRAGLTASHTQQVLVEKSLLGWKEYELEVMRDMADNVVIICSI ENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPADGE VMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITKKTPAFEKFPGSEP ILTTQMKSVGEAMALGRTFQESFQKAVRSLETGFAGWGCGPIKELDWDWEQIKYSLRVPN PDRIHAIYAAFKKGMRVEDIHEISFIDKWFLTELRELVDVEQFLLSRSLDQLSKDDFYQV KRRGFSDKQIAFATSSSESDVRSRRLALGVTPSYKRVDTCAAEFEANTPYMYSSYEYECE SAPTNKKKVLILGGGPNRIGQGIEFDYCCCHASFALREAGYETIMMNSNPETVSTDYDTS DRLYFEPLTVEDVLNVLDLERPDGIIVQFGGQTPLKLALPIQQYIEENKMVSASGTGNVK IWGTSPDSIDAAEDRKRFNAILEELGIEQPKGGIARSESDALAIASEIGYPVVVRPSYVL GGRAMEIVYNDEKLIKYLATAVQVDPERPVLVDKYLIDAVEIDVDALADTAGNVVIGGIM EHIEQAGIHSGDSACSLPTRTVSAKCLEVIRSWTTKLAKCLNVCGLMNCQYAISTSGDVF LLEANPRASRTVPFVSKAIGHPLAKYASLVMSGVTLPELGFTEEVIPKHVSVKEAVLPFE KFQGCDILLGPEMRSTGEVMGIDYEFSGAFAKAQIAAGQKLPLSGTVFLSLNDLTKRHLA EIGRGFRELGFSIVATSGTAKVLQLEGVPVEPVLKIHEGRPNARDMLKNGQIQIMVITSS GDALDSKDGLQLRRLALAYKVPITTTVDGARASIDAIKSLKNKSIEILALQDYFQTADAS EDLQAVARTAP

Transcript Sequence

Transcript ID	Zm00001d044250_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:223045592:223050535:1 gene:Zm00001d044250 gene_biotype:protein_coding transcript_biotype:protein_coding description:Carbamoyl-phosphate synthase large chain chloroplastic
Sequence	GCCCCTCCTACTGCCCATCCAAACACTCCTTGCGCCGCCATGGCCACCTCGCTCTACACC CCGTCCCAGCTCCGCCCCTCCCACTCCCAGGCCCGCCGCCTCGGCTCGCACCCGCGCGTC TGCTCCGCGCGCTGCCCCGCCCGCCGCCGCCGCGCCGCCGCCATCTCCGTGCGCGCTTCC ACCGATGGCGACGCCGCCGTCACGGTGCGCCGCTTCCCGGCCGCGCCGACCAAGGCCGGG GGCCTCTCGGGCGTAAAGAAGATCATGATCCTCGGCGCGGGGCCCATCGTCATCGGGCAG GCGTGCGAGTTCGACTACTCCGGCACGCAGGCGTGCAAGGCGCTGGTGGAGGAGGGCTAC GAGGTGGTGCTCGTCAACTCCAACCCGGCCACCATCATGACCGACCCGGGGCTCGCCCAC CGCACCTACATAGGGCCCATGACGCCGACGCTCGTCGAGCGCATCATCGACGCCGAGCGC CCCGACGCGCTGCTCCCCACCATGGGCGGCCAGACCGCGCTCAACCTAGCGGTCTCGCTT GCCGACTCGGGCGCGCTCGACCGCCTCGGGGTGCGCCTTATCGGGGCCTCCCTCCCCGCC ATCCGCGCCGCCGAGGACAGGCAGCTCTTCAAGCAGGCCATGGACCGCATCGGCCTCCAG ACGCCGCCCTCCGGCATCGGCACCACGCTGGAGGAGTGCCTCACCATCGCTGAGGACATC GGGGAGTTCCCGCTCATTGTTCGTCCGGCCTTCACTCTCGGTGGCACGGGCGGAGGCATC GCCTACAACAGGGCCGAGTTTGAGGACATATGCAGGGCCGGCCTTACCGCGTCGCACACT CAGCAGGTGCTCGTCGAGAAGTCGCTGCTCGGCTGGAAGGAGTACGAGCTGGAAGTCATG CGCGACATGGCTGACAATGTCGTCATCATCTGCTCCATCGAGAACATTGATCCCATGGGC GTGCACACGGGGGACTCCATCACCGTCGCGCCTGCGCAGACACTCACGGACAAGGAGTAC CAGAGGCTTAGGGACTACTCGGTGGCCATCATCCGTGAGATTGGTGTGGAGTGTGGTGGT TCCAATGTGCAATTCGCGGTCAATCCTGCAGATGGGGAGGTGATGGTCATCGAGATGAAT CCCAGGGTGTCCAGGTCGTCCGCACTTGCCTCAAAGGCGACAGGGTTTCCCATAGCCAAG ATGGCTGCAAAGCTGTCAGTAGGCTACACTCTGGACCAGATTCCCAATGATATTACCAAG AAGACTCCTGCTTTTGAGAAATTCCCTGGCTCTGAGCCAATATTAACCACACAGATGAAG TCTGTTGGTGAGGCGATGGCACTGGGGCGTACCTTCCAGGAGTCCTTCCAGAAAGCTGTC CGCTCACTGGAGACTGGTTTTGCGGGATGGGGTTGTGGCCCTATCAAGGAACTTGACTGG GACTGGGAACAGATAAAATATAGCTTGCGGGTACCTAATCCAGATCGTATCCATGCTATC TATGCAGCTTTCAAGAAAGGCATGAGGGTCGAAGATATCCACGAAATTAGCTTCATTGAC AAATGGTTTCTTACAGAGCTCAGGGAACTAGTGGATGTTGAGCAGTTCCTTTTATCAAGA AGCCTAGATCAATTGTCAAAGGATGACTTTTATCAAGTGAAGAGGAGGGGATTCAGTGAC AAGCAGATTGCATTTGCAACTTCCTCATCAGAAAGTGATGTGAGATCAAGACGTTTGGCA TTAGGCGTCACTCCGTCATATAAACGTGTTGATACTTGCGCTGCTGAGTTTGAAGCCAAC ACGCCCTACATGTATTCTTCCTATGAGTACGAATGTGAATCAGCTCCAACCAATAAGAAG AAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTAC TGCTGTTGCCATGCATCATTTGCACTTCGAGAGGCTGGATACGAGACTATTATGATGAAC TCCAATCCTGAGACAGTCTCTACTGACTATGATACCAGTGATCGTTTGTACTTTGAGCCA CTGACAGTTGAGGATGTATTAAATGTCCTTGATTTAGAGCGCCCAGATGGTATAATTGTG CAATTTGGAGGGCAGACTCCATTAAAGCTTGCGCTGCCTATCCAACAGTACATAGAGGAG AACAAAATGGTTTCTGCTTCAGGCACTGGTAATGTGAAGATATGGGGAACATCACCAGAT TCCATTGATGCTGCTGAGGACAGAAAAAGATTTAATGCAATTCTTGAGGAGCTTGGAATT GAACAGCCAAAGGGAGGGATTGCAAGAAGTGAGTCTGATGCATTGGCAATTGCCTCAGAA ATAGGCTACCCTGTTGTGGTCCGTCCGTCATATGTTCTTGGTGGACGGGCAATGGAGATT GTGTACAACGATGAAAAGCTGATCAAGTACCTTGCGACTGCAGTGCAAGTAGATCCAGAA AGGCCTGTTTTAGTGGACAAATATCTGATTGATGCAGTTGAAATTGATGTTGATGCATTG GCTGACACAGCTGGGAATGTTGTGATTGGTGGAATTATGGAGCATATCGAGCAAGCTGGC ATACATTCAGGCGATTCAGCATGTTCTCTTCCCACTAGAACAGTCTCAGCCAAGTGCCTA GAAGTCATCCGTTCATGGACCACCAAGCTAGCAAAGTGTCTGAATGTGTGCGGACTAATG AACTGTCAGTATGCTATATCCACTTCTGGTGATGTGTTCTTACTTGAGGCAAACCCTCGT GCATCACGCACAGTCCCTTTTGTATCCAAGGCGATCGGCCATCCGCTAGCCAAGTATGCA TCACTGGTGATGTCTGGTGTGACCCTGCCAGAGCTTGGGTTCACTGAAGAAGTGATTCCT AAGCACGTGTCTGTTAAGGAGGCTGTTCTTCCGTTCGAGAAATTTCAAGGGTGTGACATT CTCCTCGGACCAGAGATGCGCAGCACCGGGGAGGTGATGGGCATCGACTACGAGTTCTCC GGTGCCTTTGCAAAGGCGCAGATTGCTGCGGGACAGAAGCTCCCCCTAAGCGGCACCGTG TTCCTTAGCCTGAATGATCTGACGAAACGGCACCTTGCTGAGATCGGGCGTGGGTTCCGG GAGCTTGGCTTCAGCATCGTCGCCACGTCTGGAACAGCCAAAGTGCTCCAGCTCGAGGGC GTCCCGGTGGAGCCGGTACTAAAAATCCATGAGGGGCGGCCAAATGCCAGAGATATGCTG AAGAATGGCCAGATACAGATCATGGTGATAACAAGCTCGGGCGACGCTCTCGACTCCAAA GACGGCCTCCAGCTTCGTCGGCTTGCCCTCGCTTACAAGGTGCCGATCACCACGACCGTG GACGGTGCACGGGCCTCCATCGATGCCATCAAGAGCTTGAAGAACAAGTCGATCGAGATC CTCGCCTTGCAAGATTACTTCCAGACTGCTGATGCTTCGGAGGATTTACAGGCGGTGGCA CGAACCGCCCCTTAGTGGTGTCTCTTCTTTTCCCATATATAATGTGAGCCTAGCTCAAAG CCAAAACCACATCCCAAATGAAAATTTTGTTTATGGTTGCACCTGCAGCATGCATGCGCA AAGACAGGCATCCAGATTGTATCGGTCACAGGCATGGCTGGACAGAATCGGTGTTGGGCG AACGTAGTTGTAGTTTGTCATGTTAGAAGGGTGATAGCATCCATGGAAATAAGGCTTCTT CCCAACTGCGGTTTTGATGACGAGTACCATACCATATCATATCCCTTGTGGAGGTTTATT TACATTGTATCATTGTCTCACAAAAACGAAAATGTGCGACGTACATGTATTGTTATGCTT ATGCATGTTATAAT