Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044222_T041
CDS Infomation

cds chromosome:B73_RefGen_v4:3:222361716:222371635:1 gene:Zm00001d044222 gene_biotype:protein_coding transcript_biotype:protein_coding description:tetratricopeptide repeat (TPR)-containing protein
Sequence

ATGGATCTTGCTGATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTTCAGGCTGAC
CAGGTTGGCCTTGCCGAGAAGACTGCTGTCTTGTTTACAAAAGATGGTGATCAACACAAT
AATCTTCATGACATGCAGTGCATGTGGTATGAGCTTGCTTCTGGGGAGAGCTATTACCGT
CAAGGTGATCTTGGCCGGGCCCTAAAAAATTTCTTGGCAGTTGAAAAGCATTACGCTGAT
ATGACTGAAGATCAATTTGACTTCCATTCATATTGCTTGCGGAAAATGACACTTCGAGCA
TATGTTTCTATGCTGAAGTTTCAGGATCGTTTGCATGCTCATGAATACTTCCACAAGGCT
GCTGCTGGAGCTATCAGGTGCTATATGAAACTACATGATTCTCCAACAAAATCTTCTAAG
GAAGAGAATGATGAGATATCAAAACTGCCACCTGCTCAGAGGAAGAAGTTGAGGCAAAAG
CAGAAGAAAGCAGAAGCGCGTGCTAAAAGGGAGGCTGAAGAGAAACAAGAGGATGAAACA
GCTTCATCTAACAGTTCAAAATCTGGCAAGAAACAACATGCAAGACCAGTTGATCTGGAT
CCACATGGTGAAAAATTAATCCAGATTGAAGACCCGCTTGCAGAAGCCACAAAATACTTG
AAGCTTCTGCAGAATAACTCGTCAGACTCATTAGAGACCCATATACTTTCATTTGAGCTA
AGCATGAGAAAGCAAAAGGTTTTACTTGCTTTCCAGGCAGTTAAACAGCTCATTAAATTG
GATGAAGATAATCCAGACAGTCACCGTTGTTTGATAAAGTTCTTCCACAAGATAAACAGT
CTTCCTGGACCTGTGACTGATTCTGAGAAGCTAATTTGGAATGTTCTGGAAGCTGAACGA
CCTGACATGAGGCAATTACATGGAAAGTCCCTCGTTGAAGTAAACAGAAGTTTCCTTGAA
AAACACAATGCTTCCTTGATGCACCGAGCAGCTGGTGCTGAAATGATGTATCTCTTAGAG
CCAAATAAGAAGATGGAGGCAATTAATTTAATTGAAGATTCAACAAATATTACATCATCA
GGGCATAGTTTGCTTGGTCCTGTAAAAACATGGCAAATTCAAGATTGTATTGATGTTCAT
AAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAGGTGGAAGGCACGGTGC
GCGGAATATTTTCCGTACTCGACGTACTTTGAAGGCATCAAGAGCGCTATTTCAACCTAT
GCCATTGACCATAGTCTCGAGAGCCCACCAGAAAATGGAATTGCTTCAAACCCTCATCTG
AAATCAAAAGATGGAGAACAAGGGAGTTTGAATGGGACTCTGCATATTGTAGATGATTTG
AGCAGCCTAAGCATTCGGTAA

Peptide Sequence

PEP ID

Zm00001d044222_P041
PEP Infomation

pep chromosome:B73_RefGen_v4:3:222361716:222371635:1 gene:Zm00001d044222 transcript:Zm00001d044222_T041 gene_biotype:protein_coding transcript_biotype:protein_coding description:tetratricopeptide repeat (TPR)-containing protein
Sequence

MDLADRYLNSECVMQMLQADQVGLAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYYR
QGDLGRALKNFLAVEKHYADMTEDQFDFHSYCLRKMTLRAYVSMLKFQDRLHAHEYFHKA
AAGAIRCYMKLHDSPTKSSKEENDEISKLPPAQRKKLRQKQKKAEARAKREAEEKQEDET
ASSNSSKSGKKQHARPVDLDPHGEKLIQIEDPLAEATKYLKLLQNNSSDSLETHILSFEL
SMRKQKVLLAFQAVKQLIKLDEDNPDSHRCLIKFFHKINSLPGPVTDSEKLIWNVLEAER
PDMRQLHGKSLVEVNRSFLEKHNASLMHRAAGAEMMYLLEPNKKMEAINLIEDSTNITSS
GHSLLGPVKTWQIQDCIDVHKLLETVFGDQNVANRWKARCAEYFPYSTYFEGIKSAISTY
AIDHSLESPPENGIASNPHLKSKDGEQGSLNGTLHIVDDLSSLSIR

Transcript Sequence

Transcript ID

Zm00001d044222_T041
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:222361716:222371635:1 gene:Zm00001d044222 gene_biotype:protein_coding transcript_biotype:protein_coding description:tetratricopeptide repeat (TPR)-containing protein
Sequence

GGGAAAGATATTGCAACATGCTGGAAATTTCACAGCAGCAGCCGCATTAGCAGATGAAGC
TAGGTCCATGGATCTTGCTGATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTTCA
GGCTGACCAGGTTGGCCTTGCCGAGAAGACTGCTGTCTTGTTTACAAAAGATGGTGATCA
ACACAATAATCTTCATGACATGCAGTGCATGTGGTATGAGCTTGCTTCTGGGGAGAGCTA
TTACCGTCAAGGTGATCTTGGCCGGGCCCTAAAAAATTTCTTGGCAGTTGAAAAGCATTA
CGCTGATATGACTGAAGATCAATTTGACTTCCATTCATATTGCTTGCGGAAAATGACACT
TCGAGCATATGTTTCTATGCTGAAGTTTCAGGATCGTTTGCATGCTCATGAATACTTCCA
CAAGGCTGCTGCTGGAGCTATCAGGTGCTATATGAAACTACATGATTCTCCAACAAAATC
TTCTAAGGAAGAGAATGATGAGATATCAAAACTGCCACCTGCTCAGAGGAAGAAGTTGAG
GCAAAAGCAGAAGAAAGCAGAAGCGCGTGCTAAAAGGGAGGCTGAAGAGAAACAAGAGGA
TGAAACAGCTTCATCTAACAGTTCAAAATCTGGCAAGAAACAACATGCAAGACCAGTTGA
TCTGGATCCACATGGTGAAAAATTAATCCAGATTGAAGACCCGCTTGCAGAAGCCACAAA
ATACTTGAAGCTTCTGCAGAATAACTCGTCAGACTCATTAGAGACCCATATACTTTCATT
TGAGCTAAGCATGAGAAAGCAAAAGGTTTTACTTGCTTTCCAGGCAGTTAAACAGCTCAT
TAAATTGGATGAAGATAATCCAGACAGTCACCGTTGTTTGATAAAGTTCTTCCACAAGAT
AAACAGTCTTCCTGGACCTGTGACTGATTCTGAGAAGCTAATTTGGAATGTTCTGGAAGC
TGAACGACCTGACATGAGGCAATTACATGGAAAGTCCCTCGTTGAAGTAAACAGAAGTTT
CCTTGAAAAACACAATGCTTCCTTGATGCACCGAGCAGCTGGTGCTGAAATGATGTATCT
CTTAGAGCCAAATAAGAAGATGGAGGCAATTAATTTAATTGAAGATTCAACAAATATTAC
ATCATCAGGGCATAGTTTGCTTGGTCCTGTAAAAACATGGCAAATTCAAGATTGTATTGA
TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAGGTGGAAGGC
ACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGGCATCAAGAGCGCTATTTC
AACCTATGCCATTGACCATAGTCTCGAGAGCCCACCAGAAAATGGAATTGCTTCAAACCC
TCATCTGAAATCAAAAGATGGAGAACAAGGGAGTTTGAATGGGACTCTGCATATTGTAGA
TGATTTGAGCAGCCTAAGCATTCGGTAATGCACGAACAAGTTGCTGAATGGTCACAACTG
GAACACAACATTTTAGAACTGGAGCCAGTACCCAATTAACCAAAGCGTACACGAACAAGG
GGAACAAAGTGCTCTGGTGCAAGTAGTTGTCGGCACATCACATATGAAGAGTATATTATT
GATTGGGAGCTGAGGTGTCCAGTCAGGTTATTGTCTTGGTTCCAGCCTGTACCTTTTTGT
TGCCATTTTGTAGACAGGGAAAGAAAAAAAATCTTCCGTCTCAATTACGGTGAAGTTGTG
ACAGCGTTTGTTGCCTAGCGATATCAGGGTGTGACCATTCGTTTGAAACAGTGCTCCCTC
TCTTTTTGGACTACAAAATTTTGGCACAAAGCAGGTGTACAAGGTTAAACCTTTTAAAAC
TTTCATCTATTTGTTTCGGGATAGTTTGGTGTGTGGGGGGGTTTGTCTTGATCCTTTGTG
CTACTGCAACATTTGGTCCTCGACATTGTAAATTAGTTAATCTTAAACATAGAAACTGTA
TTCCAGTTGTCATGACAAATAATGATCAATGTTAACCCTGGGTGTTTGATC