Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d044220_T008
CDS Infomation	cds chromosome:B73_RefGen_v4:3:222160707:222169880:-1 gene:Zm00001d044220 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:centromere protein C 1 description: centromere protein C 1
Sequence	ATGCGTTTTCTTCGCAGCAAACCGGTGCCTGTTGTGGACCAATCTAAGTTATCAAATATT TCAGATCCAATCACATTCTTCATGACCTTGGATCGGCTTGAAGAAGCCGAGGAGGAGATC AAACGGCTAAATGGAGAGGCAGAAAAACGCACATTGAATTTTGATCCTGTAGATGAACCC ATTAGACAGCCTGGTTTACGTGGGAGAAAATCAGTCCGCAGTTTCAAGGTAATTGAGGAT GTTGGTACTCAAGATCCCAATGAGGCACCGGCTTCCCAAACAGCAACTATGACAGGATCT CAGTTGTCACAGGATGTTATGCATGCTGTTGCGGGCAAAAATGGACGATCTGTTTCCTCA AGATCTAGTGAAGCTATTTCAGAGAAAGAAGTTTCATTAGCTGAGAAGGATGGCCGTGAC GATTTGACTTATATACTGACCTCAATCCAAGATTTAGATGAATCTGAAGAGGAAGAGTTT ATCCGGAAGACCTTAGGGATTAAAGAAACAAGGAAAGAAAGAGTTAGTCTTCGTAACTCC ATTCTTGGAGTTAGGTCCCTAAGAAGCAATACTGAACAAAAAGGTTCAATGAAGGTCCAC CCTCCAGAAAGTCATTTGCCTCAGACTCGCCAAGATCGAATTTCAGAGTTAGAGAAACAT TTGTTTCCTGGAGGTGCAGCAAATGCTAAATGCACAGATGATGAATCTGAAGGGTCACCA GATATTGTGATGGGTGAACCATCATTGGTGCATTATTCTTCTGATGTTCTGATGACTGAT GAGAACTTTACTGCAAGTGACGTTGACAGGGAGACCCCAAATCTGGGTGCCAGAGCAGCA GACCCTGTTCTTGATCCTGAACCAAACTTGCCTGATCATGCATATGAAAGGCAACCTGGA GGTTCCTCACTTGGTTTGTACAGAGACACAGAAGTTGGAGTTGCCAAAGAAAATGAGACA TGTAACAGGAGCAATATATCTGTGGAGGAAGATGATGTGCCAATAGACTATATAACTATT GGCAGGTCTACTAATGAAACAGAAGTTTCTTCTTCTCATCCTTTGGAGGGCAGCTCGACA GAAGAATTGGTCACTAAACCAGGTAGACATGCGGCTCCAGATGGTATCTGTAGGACTTCA CATGCAGCTGAGGATAGCATTCAACATCTAGAAGCGGTCAAAGAGGGTGGTGTCCTACAA GGTACTTGTTTTCTATGA

Peptide Sequence

PEP ID	Zm00001d044220_P008
PEP Infomation	pep chromosome:B73_RefGen_v4:3:222160707:222169880:-1 gene:Zm00001d044220 transcript:Zm00001d044220_T008 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:centromere protein C 1 description: centromere protein C 1
Sequence	MRFLRSKPVPVVDQSKLSNISDPITFFMTLDRLEEAEEEIKRLNGEAEKRTLNFDPVDEP IRQPGLRGRKSVRSFKVIEDVGTQDPNEAPASQTATMTGSQLSQDVMHAVAGKNGRSVSS RSSEAISEKEVSLAEKDGRDDLTYILTSIQDLDESEEEEFIRKTLGIKETRKERVSLRNS ILGVRSLRSNTEQKGSMKVHPPESHLPQTRQDRISELEKHLFPGGAANAKCTDDESEGSP DIVMGEPSLVHYSSDVLMTDENFTASDVDRETPNLGARAADPVLDPEPNLPDHAYERQPG GSSLGLYRDTEVGVAKENETCNRSNISVEEDDVPIDYITIGRSTNETEVSSSHPLEGSST EELVTKPGRHAAPDGICRTSHAAEDSIQHLEAVKEGGVLQGTCFL

Transcript Sequence

Transcript ID	Zm00001d044220_T008
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:222160707:222169880:-1 gene:Zm00001d044220 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:centromere protein C 1 description: centromere protein C 1
Sequence	CCAGGAGCAGTGTGAGCTTGAATATCATTCATCTGACTTGTCTTGATGCGTTTTCTTCGC AGCAAACCGGTGCCTGTTGTGGACCAATCTAAGTTATCAAATATTTCAGATCCAATCACA TTCTTCATGACCTTGGATCGGCTTGAAGAAGCCGAGGAGGAGATCAAACGGCTAAATGGA GAGGCAGAAAAACGCACATTGAATTTTGATCCTGTAGATGAACCCATTAGACAGCCTGGT TTACGTGGGAGAAAATCAGTCCGCAGTTTCAAGGTAATTGAGGATGTTGGTACTCAAGAT CCCAATGAGGCACCGGCTTCCCAAACAGCAACTATGACAGGATCTCAGTTGTCACAGGAT GTTATGCATGCTGTTGCGGGCAAAAATGGACGATCTGTTTCCTCAAGATCTAGTGAAGCT ATTTCAGAGAAAGAAGTTTCATTAGCTGAGAAGGATGGCCGTGACGATTTGACTTATATA CTGACCTCAATCCAAGATTTAGATGAATCTGAAGAGGAAGAGTTTATCCGGAAGACCTTA GGGATTAAAGAAACAAGGAAAGAAAGAGTTAGTCTTCGTAACTCCATTCTTGGAGTTAGG TCCCTAAGAAGCAATACTGAACAAAAAGGTTCAATGAAGGTCCACCCTCCAGAAAGTCAT TTGCCTCAGACTCGCCAAGATCGAATTTCAGAGTTAGAGAAACATTTGTTTCCTGGAGGT GCAGCAAATGCTAAATGCACAGATGATGAATCTGAAGGGTCACCAGATATTGTGATGGGT GAACCATCATTGGTGCATTATTCTTCTGATGTTCTGATGACTGATGAGAACTTTACTGCA AGTGACGTTGACAGGGAGACCCCAAATCTGGGTGCCAGAGCAGCAGACCCTGTTCTTGAT CCTGAACCAAACTTGCCTGATCATGCATATGAAAGGCAACCTGGAGGTTCCTCACTTGGT TTGTACAGAGACACAGAAGTTGGAGTTGCCAAAGAAAATGAGACATGTAACAGGAGCAAT ATATCTGTGGAGGAAGATGATGTGCCAATAGACTATATAACTATTGGCAGGTCTACTAAT GAAACAGAAGTTTCTTCTTCTCATCCTTTGGAGGGCAGCTCGACAGAAGAATTGGTCACT AAACCAGGTAGACATGCGGCTCCAGATGGTATCTGTAGGACTTCACATGCAGCTGAGGAT AGCATTCAACATCTAGAAGCGGTCAAAGAGGGTGGTGTCCTACAAGGTACTTGTTTTCTA TGAAAATGTCAGCTAAACAAAACCCCCAGGACTTATGAAAAGGCAACATATTTATTACAG TTTTTTTTTGGTATCCAAACCCCACAACCATTGTGCTAAAAGTTTGCACTATTACTACCA CCGTCTTATCTTAGATTTGATTAAGTTTATACTTCCTTCATTCTAAATTATAAAATGTTT TGGCTTTTTAGAGATTTTCACTTAGATATATACTATGTTTAGATACATAGTAAAATTTGT GTATCTAAAAAAGTGAAAATGTCTTGTAATTTGGAATGGAGTAGAAAATAATAATTATAA TTTCAACTTGCACGATACTGCGATTCCAAATAGGTGTACTATGAAAATATATTCCATGGC AAATCTAATGATACTTATTTTGTACGATAAATATTAGTATCTTTTTATATAGATCTGATC AAATTTCAGATCATTTGACTTAACATTATTCTAGAACTGCATCTTTTCCGTGGAGGGGAT ATTTTTAAAGTCTGGAGTGGTTATTTTCTGAAGTTCAGAACAATTCCTGTTCTACTCCAA CCTCTTGGGCTTGGCAGCCAACTGTGTACAGTCCACACATGTACGCCTGAATGCTCAGTC ACACGCACAATAAAAATAATCCATTACAAACAGACCCTAAAGCAGAAGAAAATCCAACAT TGTTCCCTGCTTAAAGAGACAGCACAAAAGCACATACTCCTGCCTAGGTTGTTTTGTCTT TTTCTAGGTACATAGCTTTTGCTATGCACCTGGATATACGATTATACACTATCTAGAACT ATAGATACATAATAAAAATATATGTATCTAGAAAAGGCAAAACGACCTATAATTTGAAAT GGAGGGAGTATTAAGGAAATAAACTATTTAGCATTCGCTAAATTGTTAGAAAGATATATC ATGAACATTATCACAATATTCACCACGTGGTGGAATATTATGTCTCAGTACCTATGGTTC CTTTCTTTAAAGTACTAACCAGTTTAGGTTATTGATGCTGTCTTCCATAGTTCCATACTT GTTGGCAGTTGTTCCGTATTTTCTTGAACATGCTAGAGACGTGTGCACCATTATATTAAA GGAAGGTGGGGTAAGAACCTTTAAAAATACCCACAACCACACATGCTAGAGACTCTTAGA TTACATTCACACGCTTGATTATCAAAACAACAAACTCAACCTACGCAACTAACCTCAATC TGTTGCAAGGGAAAAGAGATATGGAATTCATCGAGCCCTGGACATACTTCATAAGTACAT TTTCTTACTAGCTAGCAGAAGCGCTTCAGCTAGGTTTGGAGAAATACCATAAAAATGCAT CAACTGATATTCTTTTAAATCGACCAAGACCCTAAGATGACAAGGGAATCCCTTCTTCAA CCTGACCATCTGTTGCTTCACTTGCACTTAGGATATGTTAGGTAGGTATTCAGATTCTAA ACGTTTTAAATCCAGATTCTCTCAAGATGATGAATCATAATCACTTCACACTTCATAAAA CTATTTCGCTGTTAACTGGATTCTTCTCAAACAAAACTTTAATAAAAAATCATATAATAA AAGTATGCTATAAGAATTTCATTTTTTTTGTGGACGAACAACTCCAACTAACCCATTTTA ACTTGTTACACTAGAAAAGGATTTATGAAAAAAATAATCGCTACTAGAAAAGGGAGGGGC GGCGGGGGTGGAATTAGGATCACTAGAGGGTAGAGACCAGCCTTTGCCATCTTCGTGGTC ACATACAAAACAAGAAACATTTCGGCTCCGATTCTATCGCCAGAAATTCTGTTTGCCGTT GTTTCTAGTGTTTCTCAGTAGAAATGGATCTGTTTCTCTATTCCAAACAGCCTTTATAAG AAAAACTTGCTGAACATTGTCTAGAATTAGAGAATTGCCAAATACAAGAATCATCCTCCA CTGGCTGCAGCAACACGTAGGCAAGGAGATTTCATGAATAAAGGTATTCGTCAACGACAT TAGCAGATAGAGCTCCCTGAATGTCAGAGACCCATTTTTTGTCTATTAAAGCATCTACAA CTGTTCTCTTGTTTGCTCTACGTTTAGACACATGTGCAAAGACATGGTTGCAGGTTCAAC TGTTATTCGGCCATGGATCCATCTATTTGTGGAGAAAAAAAACATGGAAAGATTGATGAA GGTGAATTAGAAAGATTGTCCAGGGTCGGTTAGGCTCTGTTTTCTGTAACTATAGCAAAC CGACCTCATTCGAAGTGCCCAACCCAAGTTTTGAAGATTTGAAATACCAACCTACAATAC TATTTACTATGTCCACTTTTCGTGTTCTTCCCTTGCAAGGAAAGCCCGTTTGTATCTTAT CAAATAACCTTAATGGCTCATCGCGGAAGATCCAAAGCCATGTCTGAGTATACTAACATA GATGAGTACATATTGAACCAAAACTCTCTGACCGACCTGAGACAATTGGTTCACTTTCCA GCTAAAGAATTGACCAGCTATTCATACAATGATAGGAGAGGGGCAATACATGCATGCCTC GGACTCTTGGTTCGTGACCTGCAGACCTGGTGACTCAATGAGACAGCTGTCACCGCTTCA CCGGGCCTGCCATTCAGCTATAATATTAATTTAATTTTCACTGACAAATTCAAGTACTTC AATGTATAGCAGTTTGTAGGAACAGAAAATCTTTGTTTGGTATTCTGGCAATGAGTGTCA AATTTGTAGCATGTTTGTTGAGGTTTGTAGCATATATTTTTTCTCCACAGATAAGTCAAG CCAGTTGTTGGAGATGCCTCAGGAAGATATTAATCCACTGAATCAGGCTCAGATGCATGG TGGAAGCACTAAGAAATCGGCACCTGATCTATCCCCGACCAAACAGAAGAAGCAACAGGC AGTTCAAGAAAGGAAAAGGAAGCAACAGTCAAAGAGGGGCAAGAAAGTGGCTGGTGAATC CCTGGAAATACCCCAAACAAATTTTGAATCGGAGAATCAACCTCATAATGACGATGTCAA CATTGAGAAACAGACAATTACGAGTAGCACACTCTCACCAAATGGTGCCAAGGGGCAAAA GGGAGCTCAAAGGAGAAACCAGACCAAAAAAAGGAATCAAAGAAAAATCCTTGGAGATGC TGACCTTGCATGCCAGCCTGGAGTGAGAAAAAGCTCAAGAACACGCTCAAGGCCTTTGGA GTATTGGCTTGGTGAAAGATTACTATATGGGCCTATACATGACAATTTGCATGGAGCTAT TGGCATCAAAGCATACTCTCCTGGCCAAGATGGCAAGAGATCATTGAAAGTGAAATCTTT CGTGCCTGAACAGTATTCAGATCTTGTTGCTAAATCTGCAAGGTACTGAAGCCAAGATTT TCCAAAGAGGATCACGCCTTGTGACCTGTTGCTTTGTCACCTCACTATGGGATGTTGACA TGTATTGGTAGAACTGCAGTACTGCACAACGAAATGCATGTTAACTTAGGCAGGTATCAA ATGGATGAGTATCTATCTAGTTTGGATGCGCTACTACCCATTCGGCTACTCGATACGTGG AGTCTAGGGTGTCAATTGACATTGGTACTTGATAGTAAGACAGTTTTAGGTTCAGACTCT TGAAAATTGATTTTGTTTGTCTTCTCGTTTTCAGATTTAAGATGCGATACCACAGATAAA AATCTTGGGTAATTGGAGGTAAAAAAAAGGATAGCACACCTAAATATCATAATGATGTTA TGATTTTTTTATTCAGTGTTATGGCTCATGCCGTCAAGGTATCATGTGGTGTGATAGTAT CTTGATGTTAAGATCTGTGG