Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044109_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:219505685:219508544:1 gene:Zm00001d044109 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tonoplast dicarboxylate transporter
Sequence

ATGGACAAGCGCGGCAGCTTCGGGGGGACCTCGTCCGACGACGTGGAGGCGCCGCTGCTC
CCGCCGCCCGCGCGCGACGACGGGGCACAGGAGTTGCGGTTGCCGCCGTCCTGGGTGCGC
GCGCTGCTCGCGCACAGGTATCCGGCCGTGGCGGCTGGCCCCGCGGCAGCAGCGGCCGTG
TGCGCGCTCGTGGACCTCGCCGTCGGCGGGGGCGCCCACGCCCACCACCACCGAGAGGCG
CGCAACATGCTCGCAGTGCTCGCCTGGGTCTTCCTCTGGTGGGTCACGGGCGCCGTGCCG
CTGGCCGTCGCCTCCATGGCGCCGCTCTTCCTCTTCCCGCTGTTCGGCGTCTCCTCCGCG
GACGCCGTCGCCAAGGCCTACATGGACGACGTCATCTCGCTCGTCCTCGGCAGCTTCATA
CTCGCTCTCGCCATCGAACACTACCAAATCCACCGCCGCCTCGCTCTCAACATCACGTCG
CTCTTCTGCGGGGACCCGGTGCGGCCGCCGCTGTTGCTGCTGGGCATCACCGGCACCACT
TTCTTCGTCAGCATGTGGATCCACAACACGGCGTGCACGGTCATGATGATGCCCGTGGCG
ACGGGGATCCTGCAGAGGCTGCCGCGCGGGGGCGCCGGGGCCGGGACCGGGGCGCACGAC
GAGGTCCGCCGCTTCTCCAAGGCCGTGGTGCTCGGCGTCGTGTACGCGTCGGCCATCGGC
GGGATGGCCACGCTGGCGGGCACCGGCGTCAACATCATCCTCGTCGGTATGTGGTCCACC
TACTTCCCGGAGCAGGAGCCCATCACCTTTAGCTCCTGGATGTCCTTCGGCCTCCCCATG
GCGCTCATCCTCTTCTTGGCACTCTGGATCACACTCTGCCTCATGTTCTGCTCCAACAAC
ACGGGAAAGGCACTCTCCGGTTACCTGGACAGAAGCCATCTCAGAAGAGAGCTCAGCTTG
TTAGGTCCAATGGTATTTGCAGAGAAGATGGTCTTGGCAGTGTTTGGGGGTCTAATTGTG
CTATGGATGACTAGGAACCTTACAGCTGACATACCAGGGTGGGGGGCTCTCTTCCACAAC
AATGTCGGAGACGGAACAGTCACCATCATGATGGCCACGCTACTCTTCATAATTCCAAGC
CGGAAGAACAAGGGCGAGAAACTGATGGACTGGGACAAGTGTAGGAAGCTCCAGTGGGAC
ATTATCCTCCTCCTGGGGGCAGGATTCGCCATCGCTGAAGGCTTCAGGTCAAGCGGCCTG
ACCGACATCCTCTCTGACGGGCTCCGGTTCCTGAAGGGCGCAGAGACGGTGGTCATTGTA
CCTGTGGCCTGCATCGTCAGCGGTGTCGTCACAGAGTTCACGTCGGACGACGCGACCACG
ACGCTGCTGCTCCCTCTGTTTGCTGAATTGGCCAAGGCGATCGATGTGCACCCAGCGCTG
CTCATGGTTTCTGGAGCAGTTGGGGCTCAGCTTTCGTACTTGTTACCTACTGGATCACCG
TCAAACGTAATTGGGTTCAGCACTGGCCACATTACCATCAAGGATCTCGTCACCACAGGG
CTTCCCCTGAAACTTGTCGGAATCGCGGCTCTGACAGTCTTGATGCCAACTCTAGGATCA
CAGGTTTTTGGCACAAACAGCAAGTTCTAG

Peptide Sequence

PEP ID

Zm00001d044109_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:219505685:219508544:1 gene:Zm00001d044109 transcript:Zm00001d044109_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tonoplast dicarboxylate transporter
Sequence

MDKRGSFGGTSSDDVEAPLLPPPARDDGAQELRLPPSWVRALLAHRYPAVAAGPAAAAAV
CALVDLAVGGGAHAHHHREARNMLAVLAWVFLWWVTGAVPLAVASMAPLFLFPLFGVSSA
DAVAKAYMDDVISLVLGSFILALAIEHYQIHRRLALNITSLFCGDPVRPPLLLLGITGTT
FFVSMWIHNTACTVMMMPVATGILQRLPRGGAGAGTGAHDEVRRFSKAVVLGVVYASAIG
GMATLAGTGVNIILVGMWSTYFPEQEPITFSSWMSFGLPMALILFLALWITLCLMFCSNN
TGKALSGYLDRSHLRRELSLLGPMVFAEKMVLAVFGGLIVLWMTRNLTADIPGWGALFHN
NVGDGTVTIMMATLLFIIPSRKNKGEKLMDWDKCRKLQWDIILLLGAGFAIAEGFRSSGL
TDILSDGLRFLKGAETVVIVPVACIVSGVVTEFTSDDATTTLLLPLFAELAKAIDVHPAL
LMVSGAVGAQLSYLLPTGSPSNVIGFSTGHITIKDLVTTGLPLKLVGIAALTVLMPTLGS
QVFGTNSKF

Transcript Sequence

Transcript ID

Zm00001d044109_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:219505685:219508544:1 gene:Zm00001d044109 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tonoplast dicarboxylate transporter
Sequence

AAACAGCGGCAACCGACCGACGGAACGAAGCAGCCGGTCGCGGTGCCGATGGACAAGCGC
GGCAGCTTCGGGGGGACCTCGTCCGACGACGTGGAGGCGCCGCTGCTCCCGCCGCCCGCG
CGCGACGACGGGGCACAGGAGTTGCGGTTGCCGCCGTCCTGGGTGCGCGCGCTGCTCGCG
CACAGGTATCCGGCCGTGGCGGCTGGCCCCGCGGCAGCAGCGGCCGTGTGCGCGCTCGTG
GACCTCGCCGTCGGCGGGGGCGCCCACGCCCACCACCACCGAGAGGCGCGCAACATGCTC
GCAGTGCTCGCCTGGGTCTTCCTCTGGTGGGTCACGGGCGCCGTGCCGCTGGCCGTCGCC
TCCATGGCGCCGCTCTTCCTCTTCCCGCTGTTCGGCGTCTCCTCCGCGGACGCCGTCGCC
AAGGCCTACATGGACGACGTCATCTCGCTCGTCCTCGGCAGCTTCATACTCGCTCTCGCC
ATCGAACACTACCAAATCCACCGCCGCCTCGCTCTCAACATCACGTCGCTCTTCTGCGGG
GACCCGGTGCGGCCGCCGCTGTTGCTGCTGGGCATCACCGGCACCACTTTCTTCGTCAGC
ATGTGGATCCACAACACGGCGTGCACGGTCATGATGATGCCCGTGGCGACGGGGATCCTG
CAGAGGCTGCCGCGCGGGGGCGCCGGGGCCGGGACCGGGGCGCACGACGAGGTCCGCCGC
TTCTCCAAGGCCGTGGTGCTCGGCGTCGTGTACGCGTCGGCCATCGGCGGGATGGCCACG
CTGGCGGGCACCGGCGTCAACATCATCCTCGTCGGTATGTGGTCCACCTACTTCCCGGAG
CAGGAGCCCATCACCTTTAGCTCCTGGATGTCCTTCGGCCTCCCCATGGCGCTCATCCTC
TTCTTGGCACTCTGGATCACACTCTGCCTCATGTTCTGCTCCAACAACACGGGAAAGGCA
CTCTCCGGTTACCTGGACAGAAGCCATCTCAGAAGAGAGCTCAGCTTGTTAGGTCCAATG
GTATTTGCAGAGAAGATGGTCTTGGCAGTGTTTGGGGGTCTAATTGTGCTATGGATGACT
AGGAACCTTACAGCTGACATACCAGGGTGGGGGGCTCTCTTCCACAACAATGTCGGAGAC
GGAACAGTCACCATCATGATGGCCACGCTACTCTTCATAATTCCAAGCCGGAAGAACAAG
GGCGAGAAACTGATGGACTGGGACAAGTGTAGGAAGCTCCAGTGGGACATTATCCTCCTC
CTGGGGGCAGGATTCGCCATCGCTGAAGGCTTCAGGTCAAGCGGCCTGACCGACATCCTC
TCTGACGGGCTCCGGTTCCTGAAGGGCGCAGAGACGGTGGTCATTGTACCTGTGGCCTGC
ATCGTCAGCGGTGTCGTCACAGAGTTCACGTCGGACGACGCGACCACGACGCTGCTGCTC
CCTCTGTTTGCTGAATTGGCCAAGGCGATCGATGTGCACCCAGCGCTGCTCATGGTTTCT
GGAGCAGTTGGGGCTCAGCTTTCGTACTTGTTACCTACTGGATCACCGTCAAACGTAATT
GGGTTCAGCACTGGCCACATTACCATCAAGGATCTCGTCACCACAGGGCTTCCCCTGAAA
CTTGTCGGAATCGCGGCTCTGACAGTCTTGATGCCAACTCTAGGATCACAGGTTTTTGGC
ACAAACAGCAAGTTCTAGGAGCGGAATGCATATTGGACGGTTCATTCCTCCAAGCCCACG
TTCTAGGAGCGGAATGCATATTTTGGACCGTTCATTCCTCGAAGCCCAGTTGTATATATG
TACAGTACTTTCCCTTATCTTGTATCTACGGCCTAGTCAAGGTTAGTGGGAGGGTAAGGG
TATACTCTTTGATCTGTACAAGGTCAAACATTGAGGATTGTATGCAATGCTCCAATCTGT
GTGAAAATAGCTACAGGAGTGCTCCTTGAGAGCGAAATGAAGTCAAAGGGAGAGCAATTT
AAAATTCAAGAGGAACTTCTCAGTCACAGCCCATCCTAACATGGAAGCTCAGTCATATTC
CAAAACTTCAGCATACAAAGGATGATGGATTTGAAATGGAGAAAATTTCAGTGCAAATGT
TGGATATGTCAGTACCCTACTCGTGCTGCTTTACACTGTCACAATTAAAGACAAATGATT
AAATACGGGACCTGACTTTTAGGT