Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044056_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:3:218046236:218049969:1 gene:Zm00001d044056 gene_biotype:protein_coding transcript_biotype:protein_coding description: potassium channel 1
Sequence

ATGCTTCGTCTATGGCGTCTCCGTAGAGTCAGCTCTCTCTTTGCTAGATTGGAGAAAGAT
AGACATTTCAATTACTTCTGGGTTCGATGTGCAAAGCTCATATGTGTCACACTTTTTGCC
GTCCACTGTTCGGCATGCTTCTACTATCTTCTCGCTGACAGGTATCCTGACCCAACGGAT
ACGTGGATTGGCAATTCGATGCCAGATTTTCATCAGCGGGGTTTGTGGATTCGATATGTA
GTATCAGTGTATTGGTCAATCACTACTCTTACAACTGTGGGTTATGGTGATTTGCACGCG
GAGAACACAAGGGAGATGATATTCAACATTTTCTACATGCTATTCAACCTTGGATTGACT
GCCTATTTGATTGGTAACATGACCAATCTGGTTGTCCATGGCACCAGCCGTACTCGAAAA
TATAGGGATACAATTCAAGCAGCAACCAGCTTTGCACTAAGGAATCAGTTACCAAGTCGG
CTCCAAGATCAGATGATCTCACATCTTAGCTTGAAGTTCAGAACAGATTCAGAAGGTCTT
CAACAACAAGAGACCCTTGATGCGCTTCCCAAGGCTATAAGATCAGGCATTTCTCAGTAT
CTGTTTTTCAATCTTGTCCAAAAAGTTTACTTGTTTGAAGGGGTGTCCAATGACCTAATT
TTTCAACTGGTTTCTGAGATGAAAGCTGAATATTTTCCACCTAGGGAAGATGTGATACTG
CAGAATGAAGCACCCACAGACTTCTATATTTTAGTTACTGGTAGCGCGGAGTTGATAGAG
TTGCGAAATGGCGGGGAACAGATGGCTGGAGTGGCTAAGGCAGGAGATGTTGTCGGAGAA
ATTGGGGTTCTTTGCTATAGGCCCCAACTATTCACAGTTCGAACAAAATCATTATGCCAG
CTTCTGCGTATGAATCGCACTGCCTTTCTCAGCCTTGTTCAATCCAATGTTGCAGATGGA
ACAATAATAATGAACAACCTTATGCAGTTACTAAAACAGCAGAAAGACAACAGTGTAATG
GTGGGTGTTCTTAAGGAGATTGAGAACATGCTAGCGCGGGGTCGTCTGGACTTGCCAATT
ACCCTCTGTTTTGCGGTAAATAAAGGAGACGATTTAATGTTACATCAACTTCTGAAGCGT
GGTTTGGATCCAAATGAATCAGATAACAATGGGCATACAGCACTGCATATAGCTGCTTCC
AAAGGAGACGAACAATGTGTCAAGCTTCTTCTAGACTACGGAGCTGATCCAAATGCTAGA
GACTCTGAAGGAAAAGTGCCTCTATGGGAGGCTTTATGTGAAAAGCACAATGCAGTGATA
GAGCTGTTAGTAGAGAGTGGTGCAGAGCTATCATCTGGAGACACGGCCTTGTATGCTTGC
ATCGCTGTTGAGGAAAATGATGCTGAGCTGCTTGAGAACGTTATCCGTTATGGTGGCAAC
ATAAACAACCCAACGAAAGACGGAACCACACCGCTGCATCGTGCGGTCTGTGATGGAAAT
GTTCAGATGGTTGAGTTGTTGCTGGAACACGGAGCTGACGTCGACAAGCAGGACAGTAAT
GGCTGGTCGCCAAGAGATCTAGCTGATCAGCAAGGCCATGATGACATTCAGGCTCTCTTC
AAATCACGAAAAGCACACAGGAAGCATGCCTCAAATGGCAGAGTGGCACCTATGCTGATA
GGGAGATTCAACAGTGAGCCCTCGATGCCAGATATGAGCCATGAAAACGCCAGAGTACGC
AGCGAAGTTGTTCCGCAGAAGCTCCTCCGAAAGAGGGTGAGTTTCCAGAATTCTCTTTTC
GGCGTCATCTCTTCGTCCCACGCCCACCAGGACACCGGCCGTCTGCTCTCGAAAGGCCTC
GCTGGAACAGAGGGTCCAAATTGCCGTCACGACTCCCTCATCAGGGTGACAATCAGCTGC
CCCGAGAAGGGGGGGAACGCCGCAGGGAAGCTCGTGCGCCTACCGCGGTCGATGGCCGAG
CTTCTCGAACTAGGTGCAAAGAAGTTCGGCATCAAGCCTGGCAAGGTCCTGACAGTTGGG
GGTGCTGAGATTGATGAGGTGGAGCTTATCAGAGACGGTGATCATATTCTTCTCGTCAGT
GATGAATGGGTGCCAGATGTTGAGCAAATTAGGCCTTAA

Peptide Sequence

PEP ID

Zm00001d044056_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:3:218046236:218049969:1 gene:Zm00001d044056 transcript:Zm00001d044056_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description: potassium channel 1
Sequence

MLRLWRLRRVSSLFARLEKDRHFNYFWVRCAKLICVTLFAVHCSACFYYLLADRYPDPTD
TWIGNSMPDFHQRGLWIRYVVSVYWSITTLTTVGYGDLHAENTREMIFNIFYMLFNLGLT
AYLIGNMTNLVVHGTSRTRKYRDTIQAATSFALRNQLPSRLQDQMISHLSLKFRTDSEGL
QQQETLDALPKAIRSGISQYLFFNLVQKVYLFEGVSNDLIFQLVSEMKAEYFPPREDVIL
QNEAPTDFYILVTGSAELIELRNGGEQMAGVAKAGDVVGEIGVLCYRPQLFTVRTKSLCQ
LLRMNRTAFLSLVQSNVADGTIIMNNLMQLLKQQKDNSVMVGVLKEIENMLARGRLDLPI
TLCFAVNKGDDLMLHQLLKRGLDPNESDNNGHTALHIAASKGDEQCVKLLLDYGADPNAR
DSEGKVPLWEALCEKHNAVIELLVESGAELSSGDTALYACIAVEENDAELLENVIRYGGN
INNPTKDGTTPLHRAVCDGNVQMVELLLEHGADVDKQDSNGWSPRDLADQQGHDDIQALF
KSRKAHRKHASNGRVAPMLIGRFNSEPSMPDMSHENARVRSEVVPQKLLRKRVSFQNSLF
GVISSSHAHQDTGRLLSKGLAGTEGPNCRHDSLIRVTISCPEKGGNAAGKLVRLPRSMAE
LLELGAKKFGIKPGKVLTVGGAEIDEVELIRDGDHILLVSDEWVPDVEQIRP

Transcript Sequence

Transcript ID

Zm00001d044056_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:218046236:218049969:1 gene:Zm00001d044056 gene_biotype:protein_coding transcript_biotype:protein_coding description: potassium channel 1
Sequence

CATATGGATTTTTCAACATGCTTCGTCTATGGCGTCTCCGTAGAGTCAGCTCTCTCTTTG
CTAGATTGGAGAAAGATAGACATTTCAATTACTTCTGGGTTCGATGTGCAAAGCTCATAT
GTGTCACACTTTTTGCCGTCCACTGTTCGGCATGCTTCTACTATCTTCTCGCTGACAGGT
ATCCTGACCCAACGGATACGTGGATTGGCAATTCGATGCCAGATTTTCATCAGCGGGGTT
TGTGGATTCGATATGTAGTATCAGTGTATTGGTCAATCACTACTCTTACAACTGTGGGTT
ATGGTGATTTGCACGCGGAGAACACAAGGGAGATGATATTCAACATTTTCTACATGCTAT
TCAACCTTGGATTGACTGCCTATTTGATTGGTAACATGACCAATCTGGTTGTCCATGGCA
CCAGCCGTACTCGAAAATATAGGGATACAATTCAAGCAGCAACCAGCTTTGCACTAAGGA
ATCAGTTACCAAGTCGGCTCCAAGATCAGATGATCTCACATCTTAGCTTGAAGTTCAGAA
CAGATTCAGAAGGTCTTCAACAACAAGAGACCCTTGATGCGCTTCCCAAGGCTATAAGAT
CAGGCATTTCTCAGTATCTGTTTTTCAATCTTGTCCAAAAAGTTTACTTGTTTGAAGGGG
TGTCCAATGACCTAATTTTTCAACTGGTTTCTGAGATGAAAGCTGAATATTTTCCACCTA
GGGAAGATGTGATACTGCAGAATGAAGCACCCACAGACTTCTATATTTTAGTTACTGGTA
GCGCGGAGTTGATAGAGTTGCGAAATGGCGGGGAACAGATGGCTGGAGTGGCTAAGGCAG
GAGATGTTGTCGGAGAAATTGGGGTTCTTTGCTATAGGCCCCAACTATTCACAGTTCGAA
CAAAATCATTATGCCAGCTTCTGCGTATGAATCGCACTGCCTTTCTCAGCCTTGTTCAAT
CCAATGTTGCAGATGGAACAATAATAATGAACAACCTTATGCAGTTACTAAAACAGCAGA
AAGACAACAGTGTAATGGTGGGTGTTCTTAAGGAGATTGAGAACATGCTAGCGCGGGGTC
GTCTGGACTTGCCAATTACCCTCTGTTTTGCGGTAAATAAAGGAGACGATTTAATGTTAC
ATCAACTTCTGAAGCGTGGTTTGGATCCAAATGAATCAGATAACAATGGGCATACAGCAC
TGCATATAGCTGCTTCCAAAGGAGACGAACAATGTGTCAAGCTTCTTCTAGACTACGGAG
CTGATCCAAATGCTAGAGACTCTGAAGGAAAAGTGCCTCTATGGGAGGCTTTATGTGAAA
AGCACAATGCAGTGATAGAGCTGTTAGTAGAGAGTGGTGCAGAGCTATCATCTGGAGACA
CGGCCTTGTATGCTTGCATCGCTGTTGAGGAAAATGATGCTGAGCTGCTTGAGAACGTTA
TCCGTTATGGTGGCAACATAAACAACCCAACGAAAGACGGAACCACACCGCTGCATCGTG
CGGTCTGTGATGGAAATGTTCAGATGGTTGAGTTGTTGCTGGAACACGGAGCTGACGTCG
ACAAGCAGGACAGTAATGGCTGGTCGCCAAGAGATCTAGCTGATCAGCAAGGCCATGATG
ACATTCAGGCTCTCTTCAAATCACGAAAAGCACACAGGAAGCATGCCTCAAATGGCAGAG
TGGCACCTATGCTGATAGGGAGATTCAACAGTGAGCCCTCGATGCCAGATATGAGCCATG
AAAACGCCAGAGTACGCAGCGAAGTTGTTCCGCAGAAGCTCCTCCGAAAGAGGGTGAGTT
TCCAGAATTCTCTTTTCGGCGTCATCTCTTCGTCCCACGCCCACCAGGACACCGGCCGTC
TGCTCTCGAAAGGCCTCGCTGGAACAGAGGGTCCAAATTGCCGTCACGACTCCCTCATCA
GGGTGACAATCAGCTGCCCCGAGAAGGGGGGGAACGCCGCAGGGAAGCTCGTGCGCCTAC
CGCGGTCGATGGCCGAGCTTCTCGAACTAGGTGCAAAGAAGTTCGGCATCAAGCCTGGCA
AGGTCCTGACAGTTGGGGGTGCTGAGATTGATGAGGTGGAGCTTATCAGAGACGGTGATC
ATATTCTTCTCGTCAGTGATGAATGGGTGCCAGATGTTGAGCAAATTAGGCCTTAACAAT
AAGTGAGCCAGCTGTGGTGCTCTTATTGCAATTTGACATGATATGGGGAAACATGCCCCT
GTGACCCTGTGTGCATCAGTGCATGTCCCCCATTTAAACTGAAGTGTAGCTTATGATGGT
TTTGAAGCTGTAGGATGTATCCAGCTTGGAAATGAATTTGTAGTCAGCTGGTCTGTATGT
AGTTTCGTCATCTCTTTCCATGGGAAGGGATTCACAAAATGTAATTACATGATTTCTTTT
TTTTCCTGTCTTTAGATCAAGCTTTCTCTGGAAGTGAGAAATATTCGTGAGTCATGAATT
TTGAGATATTGATCCTATCAGTTCATTTTAGTTGCTATTTCAATTCTTCTTTGTTTGTTA
TT