Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044035_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:217296337:217300142:-1 gene:Zm00001d044035 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ketol-acid reductoisomerase chloroplastic
Sequence

ATGGCGGCGGCGACTTCCTCTTCCACCTACCTCGCCATCGGCCGCAAAACCCTAAACCCC
GCCCCCTCCGTAGCCACAGCCGCCACCTCCGTCTCCTTCCCCGCCACGCAGCACCCATGC
CTCGTCGCCGCCTCCGCGGACCGCCGCCGCGCCGTGGCTGCGAAGGTCTCGTCGCCGTCG
GTCATCGGCACCGCCATGCCGTCGCTCGACTTCGAGACCTCCGTCTTCAAGAAGGAAAAG
GTGTCCCTGGCCGGCCATGAGGAGTATATTGTGAGGGGTGGGAGGGATCTGTTCCCGCTG
TTACCGGAGGCCTTCAAGGGAATCAAACAGATCGGTGTAATCGGCTGGGGCTCGCAGGGT
CCTGCGCAAGCTCAGAACTTGAGAGACTCACTTGTTGAGGCAAAGTCAGATATTGTTGTT
AAGATTGGTCTCCGGAAAGGTTCTAAATCTTTTGAAGAAGCCCGAGCAGCAGGATTCACC
GAAGAGAGTGGGACGCTGGGTGATATATGGGAGACTGTATCAAACAGTGATCTTGTTTTG
CTACTGATATCTGATTCTGCTCAGGCTGATAACTACGAGAAAATTTTCTCGCACATGAAA
CCAAACAGTATTCTTGGTTTGTCACATGGATTTCTCCTTGGACATTTGCAATCTCTGGGT
TTTGATTTCCCTAAAAGCATCAGTGTGATTGCTGTATGCCCCAAGGGAATGGGCCCATCA
GTCAGAAGACTTTATGTTCAGGGCAAAGAGATCAATGGTGCTGGTATCAATGCTAGCTTT
GCTGTTCACCAGGATGTTGATGGAAGGGCAACAGATGTAGCTCTAGGGTGGTCAGTAGCT
TTAGGTTCTCCTTTCACATTTGCTACTACTCTAGAGCAGGAGTACCGGAGTGACATTTTT
GGCGAGCGAGGTATTTTGCTTGGTGCTGTCCATGGCATGGTGGAGGCTCTTTTCAGGAGA
TACACAGAACAAGGAATGGACGAGGACTCAGCATATAAGAATACTGTAGAGAGCATCACT
GGAATTATATCGAAAACTATTTCAAAGAAGGGTATGCTTGAAGTGTATAACTCCTTGACT
GAAGAAGGAAAGAAGCAGTTTATTGAGGCCTATAGTGCAGCATATTACCCATGCATGGAC
ATATTGTATGAGTGCTATGAAGACGTCTCTTCTGGAAGTGAGATTAGAAGTGTGGTGTTG
GCTGGGAGGAGATTTTATGAGAAGGAAGGGCTCCCTGCTTTCCCTATGGGAAAAATTGAT
CAAACACGTATGTGGAAGGTGGGTGAAAGGGTCCGTTCAACCAGGCCACAAGGTGATCTT
GGCCCACTGCATCCCTTCACTGCTGGAGTGTATGTTGCACTAATGATGGCTCAGATTGAG
GTCCTTAGGAAGAAGGGCCACTCTTACTCAGAGATAATTAATGAGAGCCTGATCGAGTCC
GTGGACTCGTTGAACCCGTTCATGCATGCTCGCGGTGTGGCCTTCATGGTCGATAACTGC
TCCACAACTGCTCGTTTGGGATCTAGGAAGTGGGCACCACGCTTCGATTACATCTTGACC
CAACAGGCGTTTGTGACTGTTGACAAGAAAGCACCGATCAACCAAGACCTCATCAGCAAC
TTCATGTCTGACCCTGTCCACGGTGCCATCGAAGTCTGCGCTCAGCTGAGGCCCACTGTT
GACATCTCAGTGACCGCTGATGCTGATTTCGTGCGTCCAGAGCTTCGACAGTCTTCATAA

Peptide Sequence

PEP ID

Zm00001d044035_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:217296337:217300142:-1 gene:Zm00001d044035 transcript:Zm00001d044035_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ketol-acid reductoisomerase chloroplastic
Sequence

MAAATSSSTYLAIGRKTLNPAPSVATAATSVSFPATQHPCLVAASADRRRAVAAKVSSPS
VIGTAMPSLDFETSVFKKEKVSLAGHEEYIVRGGRDLFPLLPEAFKGIKQIGVIGWGSQG
PAQAQNLRDSLVEAKSDIVVKIGLRKGSKSFEEARAAGFTEESGTLGDIWETVSNSDLVL
LLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSLGFDFPKSISVIAVCPKGMGPS
VRRLYVQGKEINGAGINASFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIF
GERGILLGAVHGMVEALFRRYTEQGMDEDSAYKNTVESITGIISKTISKKGMLEVYNSLT
EEGKKQFIEAYSAAYYPCMDILYECYEDVSSGSEIRSVVLAGRRFYEKEGLPAFPMGKID
QTRMWKVGERVRSTRPQGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESLIES
VDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKKAPINQDLISN
FMSDPVHGAIEVCAQLRPTVDISVTADADFVRPELRQSS

Transcript Sequence

Transcript ID

Zm00001d044035_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:217296337:217300142:-1 gene:Zm00001d044035 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ketol-acid reductoisomerase chloroplastic
Sequence

GAGGCCGTTGTATTTATATATCTGTCGGTAGCCATAGCGATGTGAGTATGTGACTGTCCT
ACTGTCGCCAACTTTTCTGCCCTACAATCCGTCAATCCCACACATAAAGAGCTCACGGAC
GCATCTCCGGAAATCCTCTCTTTCCAGCCACCTCACTCTTCACTAGCCTCTGCTCCTCTG
AAATGGCGGCGGCGACTTCCTCTTCCACCTACCTCGCCATCGGCCGCAAAACCCTAAACC
CCGCCCCCTCCGTAGCCACAGCCGCCACCTCCGTCTCCTTCCCCGCCACGCAGCACCCAT
GCCTCGTCGCCGCCTCCGCGGACCGCCGCCGCGCCGTGGCTGCGAAGGTCTCGTCGCCGT
CGGTCATCGGCACCGCCATGCCGTCGCTCGACTTCGAGACCTCCGTCTTCAAGAAGGAAA
AGGTGTCCCTGGCCGGCCATGAGGAGTATATTGTGAGGGGTGGGAGGGATCTGTTCCCGC
TGTTACCGGAGGCCTTCAAGGGAATCAAACAGATCGGTGTAATCGGCTGGGGCTCGCAGG
GTCCTGCGCAAGCTCAGAACTTGAGAGACTCACTTGTTGAGGCAAAGTCAGATATTGTTG
TTAAGATTGGTCTCCGGAAAGGTTCTAAATCTTTTGAAGAAGCCCGAGCAGCAGGATTCA
CCGAAGAGAGTGGGACGCTGGGTGATATATGGGAGACTGTATCAAACAGTGATCTTGTTT
TGCTACTGATATCTGATTCTGCTCAGGCTGATAACTACGAGAAAATTTTCTCGCACATGA
AACCAAACAGTATTCTTGGTTTGTCACATGGATTTCTCCTTGGACATTTGCAATCTCTGG
GTTTTGATTTCCCTAAAAGCATCAGTGTGATTGCTGTATGCCCCAAGGGAATGGGCCCAT
CAGTCAGAAGACTTTATGTTCAGGGCAAAGAGATCAATGGTGCTGGTATCAATGCTAGCT
TTGCTGTTCACCAGGATGTTGATGGAAGGGCAACAGATGTAGCTCTAGGGTGGTCAGTAG
CTTTAGGTTCTCCTTTCACATTTGCTACTACTCTAGAGCAGGAGTACCGGAGTGACATTT
TTGGCGAGCGAGGTATTTTGCTTGGTGCTGTCCATGGCATGGTGGAGGCTCTTTTCAGGA
GATACACAGAACAAGGAATGGACGAGGACTCAGCATATAAGAATACTGTAGAGAGCATCA
CTGGAATTATATCGAAAACTATTTCAAAGAAGGGTATGCTTGAAGTGTATAACTCCTTGA
CTGAAGAAGGAAAGAAGCAGTTTATTGAGGCCTATAGTGCAGCATATTACCCATGCATGG
ACATATTGTATGAGTGCTATGAAGACGTCTCTTCTGGAAGTGAGATTAGAAGTGTGGTGT
TGGCTGGGAGGAGATTTTATGAGAAGGAAGGGCTCCCTGCTTTCCCTATGGGAAAAATTG
ATCAAACACGTATGTGGAAGGTGGGTGAAAGGGTCCGTTCAACCAGGCCACAAGGTGATC
TTGGCCCACTGCATCCCTTCACTGCTGGAGTGTATGTTGCACTAATGATGGCTCAGATTG
AGGTCCTTAGGAAGAAGGGCCACTCTTACTCAGAGATAATTAATGAGAGCCTGATCGAGT
CCGTGGACTCGTTGAACCCGTTCATGCATGCTCGCGGTGTGGCCTTCATGGTCGATAACT
GCTCCACAACTGCTCGTTTGGGATCTAGGAAGTGGGCACCACGCTTCGATTACATCTTGA
CCCAACAGGCGTTTGTGACTGTTGACAAGAAAGCACCGATCAACCAAGACCTCATCAGCA
ACTTCATGTCTGACCCTGTCCACGGTGCCATCGAAGTCTGCGCTCAGCTGAGGCCCACTG
TTGACATCTCAGTGACCGCTGATGCTGATTTCGTGCGTCCAGAGCTTCGACAGTCTTCAT
AAGCTTGTATGGATCCGCAGTGTGACTGCAATGGCTAGTTTGTAAGAACTTAATATGCCT
GGGCTTTTGAACTCTTAGATTGTGCCTGTATTGCTCGTGCTTGAGGACCAGAAAAGTAAA
CTCTTGGCGGTGTGGTACTGTTGTGATTTGCAAGAATAAAAATAAATTTCTGTTGATCA