Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044026_T063
CDS Infomation

cds chromosome:B73_RefGen_v4:3:217213317:217222005:1 gene:Zm00001d044026 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

ATGCCACTTGTTGTTAAAGGTGGTTCTTCTAAAAAGGCAAAAGAAGCAGCAGCAGCTGCA
GCTCAAGCAGCAGCTGCAGCAGCTAGTGCTGCTTCTGCTGCCACAGTGCAAGTGCGTATC
TTATTAGATGATGGAACAGCACATGTTTTGCAGAGATCGATTGATGGTCGTAATGAACCA
GTTATTGGATTGCATGGTGGTGCTTTACTTGGTGTCACATACCGTACATCTCGTAGAATC
AGTCCTTTGACAGCAACAGCTATATCAACTGTTCAATCGATGCCCTTATCAGGTTTTGGT
GGAAGTGGATCATCTTTTGCATCTGATGATCCATTTTCCTCTAAGGAAGGGCCTCCACAA
AATTTCCAACTGTACAGCTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCT
GAGTGGACTGTGTGGGACCAAACTGTTGAGTATTGTGCATTTGCTTATCAGCAGTATATA
GTGATTTCTTCCTTGCGGCCCCAATTTAGGTACCTTGGAGATGTTTCAATTCCCTTTGCA
ACTGGTGCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAGTGT
GTCTTTGTTGATGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAGGATAAAACAAGAA
ATGAAAGCAAGAGAAGCTCAGAGTCGGGCAGCTGAAGAGCATGGAGATTTGGCTCTTATC
ACTGTTGAAGCTCCCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTG
CAGGTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATAGTACCA
AAGCAATCCAAGTTCGATGGAGATGATTCAGTGTTTCAGAAAGAACTGGATGACAGAAGG
TATGCTGAAGTTGCTGTCGCTGGAGGAGGTGTGTCTGTTGCAGTAACTCGCTTCCCTCCT
GAACAGAAGAGACCTATCGGACCTCTTGTTGTGGTTGGTGTAAGAGATGGAGTTCTCTGG
CTTGTTGACAGGTATATGTGTGCACATGCCTTATCACTCAGCCATCCTGGTATAAGATGC
CGTTGCCTTGCAGCATATGGGGACCCTGTTAGTGCTGTGAAATGGGCAACGAGACTTGGC
AGAGAGCATCACGATGACCTGGCTCAGTTTATGCTGGGTATGGGCTATGCCACTGAAGCT
CTCCATTTGCCTGGAATATCTAAGAGGCTGGAGTTCGACCTTGCAATGCAGAGCAATGAC
CTGAAAAGAGCACTTGCTTGTCTATTAACAATGAGCAATAGCCGAGATGTGGGACAAGAA
ACAGCTGCTGCTGATGCCACTGACGTTACCCAGATTCTTAGTTTGGCAGTAGCTAAGCAA
GCTAAGCAGGAAAGTCTTACAGATGCCGTGCAGGGAATAGTGAAATTCGTCAAGGAGTTT
TTTGACCTTATTGATGCAGCAGATGCCACTGGTCAATCTGACATTGCTCGTGAAGTTTTA
AAGAGATTAGCGGCTGCAGCTTCTGTAAAGGGAGCACTCCATGGACAAATGCTGCGAGGC
CTGGCACTCCGTCTTGGAAATCATGGGGAGCTTACTAGATTGTCGGGTCTGGTAAGCAAT
TTGATTACAGCTGGCCATGGACGCGAAGCAGCATTTGCTGCCGCAGTTCTGGGAGATAAT
GCCCTAATGGAGAAAGCATGGCAGGACACAGGAATGTTAGCTGAGGCTGTTTTACATGCT
CAGGCCCATGGTCGTCCATCATTAAGGAACTTGGTTATAACATGGAACAAGATGCTACAA
AAGGAACTGGATCACACACCGACTGTAAAAACCGATGCCGCCGCCGCATTCTTGGCTTCT
CTCGAGGATCCAAAGCTCACAAGCTTGGGGGAAACTGAGAAAAAGCCTCCCATCGAAATA
CTTCCTCCTGGGATGCCTCCCCTATCTGCACCTCCGATCGTGATTAAAAAGGCTGGAGCA
AAACCTGGTCTCCCTAATGCAGCAAAGGCGTCAAATGGGCCTATAGGTGCTCCTATGGCT
CAAGGTGCTCCCATGGCTCATGGTACTCCTGGGCCACAAGGAGTCCCCATGAATCAAGTT
ACTCCATCACAGGGCAGTCATGACGAGGCAAGGCCATCAGATGCTACAGTGGCTGATGCA
GCTGCCGCGGTTGCAGAAGGTACAGCAGCTCCCCCGGCTGCAGAAGGTACATCAGCTCCT
CCGGCTGCAGAAGGTACAGCAACTCCCAGCAGTGAGGAAGCTAAAGCAGCACCTGGTAAT
GAGGAAGGCACATCAAATCCAATCAACGAGGAAGCCACAGCAGCTGCAGTTTCAGTTGCT
GCAGGCAGCCCTGACTCTGCTGCTGCTCCTGCAGCTGATACTAGCTCGGACGCACCTGCT
GTTAATCCCACGGAAGATACCGTCTCTGCCCCCTCAACGGAGGCACCACCAGAGTTGACG
GATAAGCCATCTTCAGCAGAGGCATCGTTGCCACCTCCACCCAGTGTTTCTGGTGTATAA

Peptide Sequence

PEP ID

Zm00001d044026_P063
PEP Infomation

pep chromosome:B73_RefGen_v4:3:217213317:217222005:1 gene:Zm00001d044026 transcript:Zm00001d044026_T063 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

MPLVVKGGSSKKAKEAAAAAAQAAAAAASAASAATVQVRILLDDGTAHVLQRSIDGRNEP
VIGLHGGALLGVTYRTSRRISPLTATAISTVQSMPLSGFGGSGSSFASDDPFSSKEGPPQ
NFQLYSWETYQPVSGLLAQPEWTVWDQTVEYCAFAYQQYIVISSLRPQFRYLGDVSIPFA
TGAVWHRRQLFVSTPTTIECVFVDAGVAAIDIETKRIKQEMKAREAQSRAAEEHGDLALI
TVEAPQVTVSEKVSLRPPMLQVVRLASFQYAPSIPPFIVPKQSKFDGDDSVFQKELDDRR
YAEVAVAGGGVSVAVTRFPPEQKRPIGPLVVVGVRDGVLWLVDRYMCAHALSLSHPGIRC
RCLAAYGDPVSAVKWATRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSND
LKRALACLLTMSNSRDVGQETAAADATDVTQILSLAVAKQAKQESLTDAVQGIVKFVKEF
FDLIDAADATGQSDIAREVLKRLAAAASVKGALHGQMLRGLALRLGNHGELTRLSGLVSN
LITAGHGREAAFAAAVLGDNALMEKAWQDTGMLAEAVLHAQAHGRPSLRNLVITWNKMLQ
KELDHTPTVKTDAAAAFLASLEDPKLTSLGETEKKPPIEILPPGMPPLSAPPIVIKKAGA
KPGLPNAAKASNGPIGAPMAQGAPMAHGTPGPQGVPMNQVTPSQGSHDEARPSDATVADA
AAAVAEGTAAPPAAEGTSAPPAAEGTATPSSEEAKAAPGNEEGTSNPINEEATAAAVSVA
AGSPDSAAAPAADTSSDAPAVNPTEDTVSAPSTEAPPELTDKPSSAEASLPPPPSVSGV

Transcript Sequence

Transcript ID

Zm00001d044026_T063
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:217213317:217222005:1 gene:Zm00001d044026 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

TCGATCTTCGTTATGCGTCCTTATAGCTTCAGTTGGCTGATTTATTCACCAAGGCACATA
CTAGAGCTCAACATCGGTTCCATTTCTCCAAATTCAGTGTGGTTAATTCACCTTGAGTTT
GAGGGGGATGTTAGATGCATATTTATGTTTTCTATATGCCCTCATTATATAAGGGGTTTA
GTGCATATTTACCGTCATGTACCAATGTATATATATTGGCCTTAAACCGTGTCTAGCAGT
TCACCTATATGGTCATCCAAACACCGTTTTGCATGTAGATCACACTGTTCGCAGCGTGGA
GTTTGAATATGGGTAAGTGGATGGGTAAGCTCCTGGAGATATCCTTAGGGCCTCATATTG
AATACATGTGCAATTCATAACAAGAACATCGACACAGTCTGCAATATTATGCTTTGACTA
GGAATGTATCTGTAAAAGTATATTACTTTAAATTTTTAGAGTTATGCATCAAAACGTATT
TCTCATGATGAATCTAGCAATGCTAATCTTGTGTTGTTGTCAGTCTATAAATTTAGTTAT
TGATTGTCAAAGGTAGAAAAGTTTGACTTAGAAGAAACCTAGATGGACTTACATTTCTGG
TTGGAGGAAGCTGAACTTCACTAAAATACATTATGGATTAGCAATTTTGTACTTTGTTTA
GCTATTTCAATTTTTCAACCAGCCTGTGGCGGCTACACTACACGTCGTTCCTAGCTGAAT
TTGAACTAGTTTTTTTGACCTTTCGTGTTGTTATTGTTGCATTATTCACCAACCACATTA
TTTTCCAGTAATGCAAGGTAGTCATTGGCTTAAGCTGTGTTATTTTTGGTGCAATCTGTC
ACCTTTCAAGTCAGTGCTGCTTATGCTTAATGCCTTTAATCTGCTTTGCATTTACTGTAG
TGCTGTTGGAAAATTTCTGAGTTCTGGTTCCACGATTTGAAGTCTGTTTCCTGAAAAGAA
AATGGTTTAGGCCCTAGAAGGCTAGAACACGCTGCGGTCCTGGTTTAGTTGAATACTTTA
TTTTTTTATTTATTAGTCATGGTCTGGAGATCAAATCATGAAAAACTTCTCAACATGTAG
TAAAAAACCCCAGCCCTTTTGTTATCTAACAGGCCAAAACTGGAAAACCCCATTAGGTGT
TGTTTGGATGTTGTTGGATTCACCTCAATCCACATTTGTTGCGGTGGATTGGGGTGAAAT
TTAGTTCAAGTTCCACTCCGGTCCACCCCAGCACATAGGGATTGATGCAAATCTGAGTAC
ATCCAAACAAGGCCTTAGTATGGTTTGTTGTCTGGTTCAGTTCTCCAGTATCCTATTGCT
TGCATACCTGTGGAATTTTAGCTGCTCTCCAGATTTAAAATGAATTTTCTAATGATGAGT
TTTATACTTTCATTTCAGGTATGTTGCAATTGTATGGCCAGATATCCCTTCTTTTGCTGT
ATACAAAGCAAATGATTGGTCAGTTGTTGATTCAGGCACAGGGAAGCTTTTTGCCTGGGA
CACTTGTCGAGACAGATATGCTCTGGTAGAGAGTGCATTGGCCCCAAGAATGCCACTTGT
TGTTAAAGGTGGTTCTTCTAAAAAGGCAAAAGAAGCAGCAGCAGCTGCAGCTCAAGCAGC
AGCTGCAGCAGCTAGTGCTGCTTCTGCTGCCACAGTGCAAGTGCGTATCTTATTAGATGA
TGGAACAGCACATGTTTTGCAGAGATCGATTGATGGTCGTAATGAACCAGTTATTGGATT
GCATGGTGGTGCTTTACTTGGTGTCACATACCGTACATCTCGTAGAATCAGTCCTTTGAC
AGCAACAGCTATATCAACTGTTCAATCGATGCCCTTATCAGGTTTTGGTGGAAGTGGATC
ATCTTTTGCATCTGATGATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACT
GTACAGCTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCTGAGTGGACTGT
GTGGGACCAAACTGTTGAGTATTGTGCATTTGCTTATCAGCAGTATATAGTGATTTCTTC
CTTGCGGCCCCAATTTAGGTACCTTGGAGATGTTTCAATTCCCTTTGCAACTGGTGCCGT
TTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAGTGTGTCTTTGTTGA
TGCTGGAGTGGCAGCGATTGACATTGAAACAAAAAGGATAAAACAAGAAATGAAAGCAAG
AGAAGCTCAGAGTCGGGCAGCTGAAGAGCATGGAGATTTGGCTCTTATCACTGTTGAAGC
TCCCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGGTTGTTCG
TTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATAGTACCAAAGCAATCCAA
GTTCGATGGAGATGATTCAGTGTTTCAGAAAGAACTGGATGACAGAAGGTATGCTGAAGT
TGCTGTCGCTGGAGGAGGTGTGTCTGTTGCAGTAACTCGCTTCCCTCCTGAACAGAAGAG
ACCTATCGGACCTCTTGTTGTGGTTGGTGTAAGAGATGGAGTTCTCTGGCTTGTTGACAG
GTATATGTGTGCACATGCCTTATCACTCAGCCATCCTGGTATAAGATGCCGTTGCCTTGC
AGCATATGGGGACCCTGTTAGTGCTGTGAAATGGGCAACGAGACTTGGCAGAGAGCATCA
CGATGACCTGGCTCAGTTTATGCTGGGTATGGGCTATGCCACTGAAGCTCTCCATTTGCC
TGGAATATCTAAGAGGCTGGAGTTCGACCTTGCAATGCAGAGCAATGACCTGAAAAGAGC
ACTTGCTTGTCTATTAACAATGAGCAATAGCCGAGATGTGGGACAAGAAACAGCTGCTGC
TGATGCCACTGACGTTACCCAGATTCTTAGTTTGGCAGTAGCTAAGCAAGCTAAGCAGGA
AAGTCTTACAGATGCCGTGCAGGGAATAGTGAAATTCGTCAAGGAGTTTTTTGACCTTAT
TGATGCAGCAGATGCCACTGGTCAATCTGACATTGCTCGTGAAGTTTTAAAGAGATTAGC
GGCTGCAGCTTCTGTAAAGGGAGCACTCCATGGACAAATGCTGCGAGGCCTGGCACTCCG
TCTTGGAAATCATGGGGAGCTTACTAGATTGTCGGGTCTGGTAAGCAATTTGATTACAGC
TGGCCATGGACGCGAAGCAGCATTTGCTGCCGCAGTTCTGGGAGATAATGCCCTAATGGA
GAAAGCATGGCAGGACACAGGAATGTTAGCTGAGGCTGTTTTACATGCTCAGGCCCATGG
TCGTCCATCATTAAGGAACTTGGTTATAACATGGAACAAGATGCTACAAAAGGAACTGGA
TCACACACCGACTGTAAAAACCGATGCCGCCGCCGCATTCTTGGCTTCTCTCGAGGATCC
AAAGCTCACAAGCTTGGGGGAAACTGAGAAAAAGCCTCCCATCGAAATACTTCCTCCTGG
GATGCCTCCCCTATCTGCACCTCCGATCGTGATTAAAAAGGCTGGAGCAAAACCTGGTCT
CCCTAATGCAGCAAAGGCGTCAAATGGGCCTATAGGTGCTCCTATGGCTCAAGGTGCTCC
CATGGCTCATGGTACTCCTGGGCCACAAGGAGTCCCCATGAATCAAGTTACTCCATCACA
GGGCAGTCATGACGAGGCAAGGCCATCAGATGCTACAGTGGCTGATGCAGCTGCCGCGGT
TGCAGAAGGTACAGCAGCTCCCCCGGCTGCAGAAGGTACATCAGCTCCTCCGGCTGCAGA
AGGTACAGCAACTCCCAGCAGTGAGGAAGCTAAAGCAGCACCTGGTAATGAGGAAGGCAC
ATCAAATCCAATCAACGAGGAAGCCACAGCAGCTGCAGTTTCAGTTGCTGCAGGCAGCCC
TGACTCTGCTGCTGCTCCTGCAGCTGATACTAGCTCGGACGCACCTGCTGTTAATCCCAC
GGAAGATACCGTCTCTGCCCCCTCAACGGAGGCACCACCAGAGTTGACGGATAAGCCATC
TTCAGCAGAGGCATCGTTGCCACCTCCACCCAGTGTTTCTGGTGTATAAATATTTCTGAT
TCTCTTTTAGCAGTGTGCCGAATTTTCTGTATTCTGGTTCGTTCGTTCCACCACGCGCGC
TGGTATAGGTATTTGTTGCCTGTGGTATACAGATTTCGCAGACGCCAGGCAGTATGTGAG
TAGCTTTGTACATCTGCTGTCTGCGTCTCACGAGAACGTGCTACCGTTGTGTCACTGACA
CTGTGTGGCCATATCTTATGTTGTTGGTG