Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d044021_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:216967820:216972096:1 gene:Zm00001d044021 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isocitrate dehydrogenase

Sequence

ATGGCGTTCGAGAAGATCAAGGTCTCCAACCCAATCGTCGAGATGGACGGTGATGAGATG
ACCAGAGTATTCTGGCAGTCTATCAAGGACAAGCTTATCTTTCCATTTCTGGACCTGGAC
ATCAAGTACTATGACTTGGGGATACTGCACCGTGACGCAACTGATGACAAGGTCACAGTG
GAGGCTGCAGAGGCTACTCTCAAGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCA
GATGAAACTAGGGTTAAGGAGTTCAATTTGAAGCACATGTGGAAGAGCCCAAATGGCACA
ATTAGGAACATTATAAATGGTACTGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCA
AGGCTTGTTCCAGGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAG
TACCGAGCTACTGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTTTGAGGGA
AAAGAAGAACAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTGGAGGAGTTGCCTTG
TCTATGTACAACACTGATGAGTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCA
TATGAGAAGAAATGGCCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGAT
GGCAGGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATTTGAG
GCTGCTGGAATATGGTATGAGCATCGTCTTATTGATGACATGGTTGCATATGCACTTAAG
AGTGAAGGAGGCTACGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTC
TTAGCACAAGGTTTTGGCTCTTTGGGTTTGATGACATCAGTGTTGGTGTGCCCTGATGGG
AAAACCATTGAAGCTGAAGCAGCCCATGGCACGGTTACCCGCCATTTCCGTGTTCACCAG
AAAGGAGGTGAAACCAGTACGAACAGCATTGCTTCAATCTTTGCATGGACAAGGGGGCTT
GCACATAGGGCAAAGCTCGACGACAATGCGAGGCTCCTCGACTTCGCTCTCAAACTCGAG
GCCGCTTGCGTTGGAGCTGTGGAGTCTGGGAAGATGACTAAAGATCTCGCACTTCTTGTT
CATGGATCTTCCAAAGTCACGAGAAGCCATTACCTGAACACAGAAGAGTTCATCGATGCA
GTCGCTACTGAGCTTCGATCAAGATTGGGAGCCAATTGA

Peptide Sequence

PEP ID

Zm00001d044021_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:216967820:216972096:1 gene:Zm00001d044021 transcript:Zm00001d044021_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isocitrate dehydrogenase

Sequence

MAFEKIKVSNPIVEMDGDEMTRVFWQSIKDKLIFPFLDLDIKYYDLGILHRDATDDKVTV
EAAEATLKYNVAIKCATITPDETRVKEFNLKHMWKSPNGTIRNIINGTVFREPIICKNVP
RLVPGWTKPICIGRHAFGDQYRATDAVLKGPGKLKLVFEGKEEQIDLEVFNFTGAGGVAL
SMYNTDESIRAFAAASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEADWKSKFE
AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG
KTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLLDFALKLE
AACVGAVESGKMTKDLALLVHGSSKVTRSHYLNTEEFIDAVATELRSRLGAN

Transcript Sequence

Transcript ID

Zm00001d044021_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:216967820:216972096:1 gene:Zm00001d044021 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isocitrate dehydrogenase

Sequence

GCCCACGGGGTAGTTAGTAGCGCCGCCGCAGCCCCTTCTCGATCTTTGAGGCAAAGCTAC
GACTCCACCACCGCTGGCATGGCGTTCGAGAAGATCAAGGTCTCCAACCCAATCGTCGAG
ATGGACGGTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGCTTATCTTT
CCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATACTGCACCGTGACGCAACT
GATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAGTACAATGTGGCCATTAAG
TGTGCGACCATTACTCCAGATGAAACTAGGGTTAAGGAGTTCAATTTGAAGCACATGTGG
AAGAGCCCAAATGGCACAATTAGGAACATTATAAATGGTACTGTGTTCAGAGAACCAATT
ATATGCAAAAACGTTCCAAGGCTTGTTCCAGGATGGACGAAGCCCATCTGCATTGGAAGG
CATGCCTTCGGTGATCAGTACCGAGCTACTGATGCAGTTCTGAAGGGGCCTGGGAAGCTG
AAGCTAGTTTTTGAGGGAAAAGAAGAACAGATTGATCTGGAGGTGTTCAACTTCACTGGT
GCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAGTCAATTCGAGCTTTTGCCGCA
GCTTCTATGACAACTGCATATGAGAAGAAATGGCCGCTCTACCTTAGCACCAAAAACACA
ATCCTGAAGAAATATGATGGCAGGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGAC
TGGAAATCCAAATTTGAGGCTGCTGGAATATGGTATGAGCATCGTCTTATTGATGACATG
GTTGCATATGCACTTAAGAGTGAAGGAGGCTACGTGTGGGCTTGCAAGAATTACGATGGA
GATGTGCAGAGTGATTTCTTAGCACAAGGTTTTGGCTCTTTGGGTTTGATGACATCAGTG
TTGGTGTGCCCTGATGGGAAAACCATTGAAGCTGAAGCAGCCCATGGCACGGTTACCCGC
CATTTCCGTGTTCACCAGAAAGGAGGTGAAACCAGTACGAACAGCATTGCTTCAATCTTT
GCATGGACAAGGGGGCTTGCACATAGGGCAAAGCTCGACGACAATGCGAGGCTCCTCGAC
TTCGCTCTCAAACTCGAGGCCGCTTGCGTTGGAGCTGTGGAGTCTGGGAAGATGACTAAA
GATCTCGCACTTCTTGTTCATGGATCTTCCAAAGTCACGAGAAGCCATTACCTGAACACA
GAAGAGTTCATCGATGCAGTCGCTACTGAGCTTCGATCAAGATTGGGAGCCAATTGAGCT
GACAGGAAACTCTGCGTTGCAACTTGAATGCTTCATCACCGATCGGCTCTAGTCATGCTT
CCGTGATTAAGTGAATGTGCGCCGCCGCAATTTCGAGCCAAGCTAATTAAAGATGATGGG
ATCGCATCGCATGAGCGTTCAAAATAAAGGAATATGTAGAACAATGGTCGCAGATGATTA
AATTACTCATATTATGTTCAGTCATTCCCTCAGTATTTTCTAGCTTGTTTTCT