Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043981_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:3:215530133:215537594:-1 gene:Zm00001d043981 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exosome complex exonuclease RRP40

Sequence

ATGGAGTTGAGGAGGCCTGCATCCTCTCCTCTTGTCGACAACTACGTGGTACCTGGTGAC
GTCGTCCTGGACCTCTCTGAGATGAACAACCAGACCATTAAACTCGGCGCGGGTCTGCGT
CAGGAGTGTGACACCATCCAGGCGACTAGTGCTGGGAAGCTGCGGCAGTTGAAACCCAAC
AAGTATTGGATTGAAAACTCACAGAAAAGATATATACCTTCTGTAGAAGATACCGTTCTT
GGTATTGTGGTCGACACCAAACCAGACAACTTTTTGGTAGACATAAAGGGTCCTAATTTG
GCCTTTCTACCAGTACTTTCATTTGAAGGCGGTACAAGGAGAAACATACCCAAGTTCGAG
GTAAGACACTGGATCATTTGA

Peptide Sequence

PEP ID

Zm00001d043981_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:3:215530133:215537594:-1 gene:Zm00001d043981 transcript:Zm00001d043981_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exosome complex exonuclease RRP40

Sequence

MELRRPASSPLVDNYVVPGDVVLDLSEMNNQTIKLGAGLRQECDTIQATSAGKLRQLKPN
KYWIENSQKRYIPSVEDTVLGIVVDTKPDNFLVDIKGPNLAFLPVLSFEGGTRRNIPKFE
VRHWII

Transcript Sequence

Transcript ID

Zm00001d043981_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:215530133:215537594:-1 gene:Zm00001d043981 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exosome complex exonuclease RRP40

Sequence

AGAGACCGGCCCAATGATCCATCTTTATTTACCCAGAAACCCTAGTCTCTCACGCTCGCG
GAGTCAGTCTCACCATCTCTCTCGGCCGACAGCCGGCCACCACCAGCCGCCAGTAGCAAT
AGCAAATTAGCAACCCGCCGAGCACCGACCTCTCCATAGTTCCTCTACGGCTCTACCGAG
CAACCGCCGGCGTCGACCCTGCCGTCCAGGCCCGTCCTGCCGCGGTGCCGCCTGCGTCCC
TGCCCCAGCCACCCGGCCGCCACCCGCCGCCGCCAGCGAGGAGCGAGTAGTAGCGACCCT
GGTCCCTGCCGCCCTTGCGTTCGTGGCTCCCTGCCCAGTGCCCCTGCGTCAGCGTCACTG
CACTCTCCGAGGTGGAGGTGGTTCTCAAATCTCAAGTCCATCCACGGCGCTACTACCCTC
GCTGCAATGGAGTTGAGGAGGCCTGCATCCTCTCCTCTTGTCGACAACTACGTGGTACCT
GGTGACGTCGTCCTGGACCTCTCTGAGATGAACAACCAGACCATTAAACTCGGCGCGGGT
CTGCGTCAGGAGTGTGACACCATCCAGGCGACTAGTGCTGGGAAGCTGCGGCAGTTGAAA
CCCAACAAGTATTGGATTGAAAACTCACAGAAAAGATATATACCTTCTGTAGAAGATACC
GTTCTTGGTATTGTGGTCGACACCAAACCAGACAACTTTTTGGTAGACATAAAGGGTCCT
AATTTGGCCTTTCTACCAGTACTTTCATTTGAAGGCGGTACAAGGAGAAACATACCCAAG
TTCGAGGTAAGACACTGGATCATTTGAACTTTCTAGCATTGTTTAGTTTCATAGTTTTGT
CAGCCTTTATACTTTAAGTGTGAAATGTGTGTGTAGTTCTTAACATGTATTCAGTAGCAT
GTGGATTGCTTCTTATTTTTCTGTTCCAAATAGGCAAATAGTCCTTCCATTCTTTTATGT
TTGAGGTTTTAGTACTTTTTATGCTCAAATTATAAAAAGTACAGAATAACCACATGCTTC
TTTTAAACCTGTCTTTTTCTACTTTGTAATTTAAATTATTTCTCCTAAACTACATACATT
TGATGGTAGTTACTAATGACTAAGTAGACTGAGTCTTTTAGATTGTACAATGTTTAACTT
TAGTAGGAACAATTTAGGAAAGTAAATTAGGTGTGATTCTTCTTAAAATTCTACTAGGTG
TATGCCCGTGCGTTGCTACTGAATCAATATGATAAAATATATTGATATGCAAAACACTAA
CAGTTATTCTATACTTCTGTTAGCATCACTAAAAGTGAATGTTTATATAACTTCAAAAAT
ATATAAGATTGTACTCATGCTTTGTCATTAACATCTCAAATAAAACACGTAGGATTCCAT
AAAAGAATAGTTTATTATATAAGACAGTAAAGTGCATGTGCCTTACTACGGAATTTACAA
TGATACAAATTATGCATGCGACTAAAAATTGTGTTATGAAATACTGTCATTTTACCTTAT
TCTACAGTTTGCATTTACTATTGGTGCCTATTGTATATATCATCATGTCTGCTGTTTTGT
AGTAACAACAGACCAAATAAGCATGAAACCTTTTATCTCCCAAAGGTAATATTTGGATGC
TAGTACACAGTTGATGACAAATAAGAAACATTGCATAGCTAAGAATAAAAATCAATTGCA
AGAAAGTCAACATGCAACCTTAATATATCTTTGAATAACTGAGCTATTGTATGGTGTGCG
AGAAAGAGGCTGAGGCAGAGTCATTCCTTTATTACTTTGGGGTGTAAGATAATTGGGAGA
ACCTTGAACCGCTGAACCAGGCTAGCTTACAAAAGAATCAATAGTTATTGTTGGGAAACT
TTTGATGTCAAATTGTCTGCATGACTCAAAGCTCTGAATTTCCGCTTTTTGGACTCTTGT
ACAAAAGCTAAGGTCTATGCTTGCACAAAATCTTTGGCAATTTCAATTGGCGAAAAACCA
ATATCATGCACCTAGAATGGCAATAAAGCACAGGATAAGAAAAATCAACAAATCAAGCAA
AAAAGGAAGGATTATTATTGTATTGCTTAAGCACTGAGCATATATATAACTCTCCAGTCT
CCAGCACAACCTCTGTTACTATGGGAGGGAGGGAGATTAAAATGTTTGAATTGTTTTTAA
ATTACACATAGTTCACAAAACTATTACTCAGCTACAAGCATACTTTAACTTCAAAAGCAT
ATAGGCAGGATTCATATTACATAGAAATATAACAAGCAACAAGATCAGTAGGTATCTACC
AATATGTTATGTATAGATAAGTAATCATGAGTTGATATTCCACAGTTCAGTCATCCTTAC
ATTGGATGATGAAACGATATCAGTCCTCCAAGATGGCTAAGCCTTAATCAGTTTGGCAGG
TCCGCAGGTGTAGAAAATGTGGCTTCAAAACCTTTTGCAGTAGATACTGGAGGTCTCTGG
TCTTCAATACTAAAATCAGAAGTCCTTGACCACATGATCTCTATATCCCTGTATAAAATA
TAAAAGGTTCACAAGCATCTGAATTTCCAAACCTAAATGCACAATAAACACAAGAAACAC
TGAGAAATTGTTGTCCAATATAGACAGAAACCTTTCTCCACATATTATCAGGGCACGAGC
ATATTTTAGTTGATATGGAGTCAATATGTTAATAAAATATATTGAGATATAGGAACATCA
ATTATCGTTATATCTTCAAGTAAATAGCAAATGGCCTAACACATTTTTAGTGTTTCTATT
TTCCTATGATATCTAGCTAGGTTTTAGGATTGTAATAGACTTTATATATACTTCCATTTG
ACTGCAGTGACACACAAATACTACAACTTAGAAGAAGGCAAAAACCAATTTCCAGTTTTT
TATTTTATTTCTAAAAGAAGAGTAATTGGTATTGAGTATCTGAAAGCATGAGTGTTCAGG
ACAAGAGGATTTACTTAAACATACAATGTGATTGCCACTGATGAATGAAAAAAATCAACA
TTAGTTGGGACTTACTTTCCACCACATGTAACAATAGCCAACTGTCCTAGCAGCAACAGC
AGGTACTATCAAAGTTGATACAACTGCAAAGAGGTAAAAATTACTTAAGAAGGGCTTAAT
TTATGTCGACACAGCAGCCTAAATAAAAGAAATATTGAATCAAGTACATCTCCATTTTCA
TTACCACGACAAACAAAAAATAAATTGGTTTAGAGTACTTAGAAAGAAAGAAAAACATGC
CTGAAAGTGCCATATAAATTTTACACATAAAGATCTGAAAGAACATTGCATTTGTAGGCT
TACTTTAACACACCTTCGTAGAGGAATTTTAAAAGATGGTACCATATATATTTTAGCAGA
TGGTGGTACCATATATATTTTAGCATATGGTGGTACACAAAGTAGCGGAATTTCAACACT
TAAATTTGACAATTACTATTATATTGTCATAGCAGTAGCTGGGAAGAATAAATTAAAGAT
AACAAGGAAAATAACATCTTCATTCACCAACGGCTTAAGAATATAACCAACAAGAAATCA
GTTTGATGGTATCCACAGAGGAGAAAAGAAAATTTGACCTTAACTTCAGGCAACTTCCTT
AATATTCTTTTTTCCTTCAGTTGCTCTGCATTGTTTAGCTGAAATCGCAGTCGTAGAATG
TGTATTATTGTCTTCTTTCTCAGAGATAGATGGCTGGCATTATTCTTCTCGAATTATCTT
TCTCAGAGATAGATGGCTGTGGTGGGACTGGGAGCAGCAGTCGGACAGCCACGCCGGGTA
TGGGTACAAGTATGGCCAGGGTAGAGGACATTCACCACCTTGGGTGATGCTGGAGCCGGC
TTCTCCTTGGATGGTGGTTGTAGATCCCGTGGGAGCTTCGAGCGGTGACGCTGCACGGAG
CCGTCGTCGATGTTGCCTTCAGTGAGATTTCTCGGAGAAGGTGACCATCGCCGCCGCCGA
TGGCCACTTCAGTGAGTCAGTGGAGCCCGAAGCCAGGACCTTCGTGTCGTCCTCCGTGAC
GATCCAGATCAGCCTCTTCCGGTGCCATCTGCAGGCGCGCGGGGTGAGGGGAGGAGCGAG
GAGGGGGGGCGAGAGTATAGAGAAGAAGAGAAGCAGGCAACACACGGATGAGGGCGTCAC
ACATAGCAGGCGGCAGCTAGGGCGAGGACGCTGACAATCCGGGAGGAGCCAGGTCAAATC
GGCTGAAGTCTTGGGCGGAAGAGGGGGAAGGCTGCGGTTTTCTTGGCGGGGGCGAGGACG
CCAGCAATCTAGGAGAGGTAGGCCAAATCGGCGGAAGTCTCGGGCCTGCGAGGAGAGAGG
GGTGTCGGGCGGGGGCACGTCGCACAAATGTGGACGCCCTCCTTGTAGCCTTATAGAGTA
GTAGTAGTTAACATCAAATAAAAAGGAACAGATATAGTCAATGCTATAGTAAGGAACTGA
ACATGTCTAATAAGTTGATTCCAGTGTTTCGAGCTTTATATTCTGTTTATTGATTATATA
TTCATCTTACCATTGGGATGTTCCTGCAGATTGGTACATTAATATATGCTCGAGTGGTGA
AAGCAAATAGTATCATGAATCCCGAGCTCTCATGCATGGATGGTAAGTTTTTTAGTTTTC
AGCTCAGTGTCCATTTTCCTTAATTGATCATCAGAACTTCAGAAGTATGGAGTACCAAAT
TTTCTTCGTCTTAGCAAATATATCCTCATTGCCTGTGCGAACCTCTCAGCTTGTGGAATG
ATACTCAGTCTGGCCTGTTTTCTTTTGGCTTTATCTGGTTGTTCTTTTACTGTATTGATG
CTGTTCCTATTTTCAAGCTACTGGGAAAGCTGCCGAATTTGGACAGCTCAAAGATGGTTA
TATGTTCGACACATCAACTGGCATGTCACGAATGTTGTTAAGTTCCCCAACGTGTCCAGT
TCTGGAGGTCCTTGGGAAAAAACTGTCGTTTGAGATTGCTGTTGGACTCAATGGTCGAGT
CTGGGTATGTTCTAGCAACTGTCCATTGATCATTATTTTTTATCCCACCTTTTTGTTATT
TGTTTGTGTTCTGTAGGTGAATGCTCCTGCAGCAAGTACTGTCATTCTTGTATCAAATGC
AATAATGAGGTCAGAATCTTTGAGCGGCATAAAACAAAGAGCTATGGTAGAAAATCTATT
GGAGAGATTGTCATGATGATAAGTCAGCAAGCATTAGTCTAAAGTAAAATGGAGGAGTTT
CCATTGTGTCAGTTCAAAGTAAAAGTAGGAAAGTTTGAGATCAAAGTGACTATCCCCATC
AAAAGATTATTATGTATCACGTGTCGTAGTATACAGTACACTATACTCTTTTTTATATTA
AATTATCAATGTATTTAT