Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d043906_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:3:213464115:213466548:1 gene:Zm00001d043906 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline-rich glycoprotein family protein
Sequence	ATGCTTGCGCCAAGGGAAAATGACCACATCACACAAGCTCCAAAACATGAGGTTGCCCTT TTGCGACTTCACCAAGTTAATGGGATGCAGTCCCCTGCCGTGCAGGTCCAAACCAGCGGT GGCTTTGTTCTGCAGCACCTGGTGCCTGTCTCTTTGAGCACGCAGCATGATCAGCAGCAA TTGAACCAGGCTCCTGTGTACTATGTGCAAAGCCAGGATCATGCTAAATCCACAGAGAGC AAGGCGTTGGAACCTTTGGTTCAAGGTGTGCAGCCACTTGTCCACAACCCTGAAGTCATG GCTCAAGTTGAGCTACCTCAGAAACCTAATCAAGCAACTGAATTGTACCCTCAACCTCAG AATCACAGACTACAGATGCCTACCCAGCAGGTTGATTCGCATACATGGCATCCCCAACAG CCCATGGTGCAACAGCACCAATACATTATCCAACAAGTTTCACGACACATGGCTCAACAG CAGTCCTCGTCTCCTCATTCTCAGAGTGCTCAAGCCACACCCTTGTTTCCTCCATTCAGC TCCCCGAAGCCTGCTAGTTCTAACACTGATCCAATTACAAGAAGTATGGCTGGGCAACCT CCATACTCTTCATCGCAGCAGCAGCATGAAGTCGCCCATTCATTTTATGGCCAAGGCAAT ACAATATTGGTTCCTGTAGCTGATCATAATGCTCAGCATCAGCAATCGCAATCAGTGCAG CTACACAGCCAGGGCACCTGTCTACCTCAACCAAGCAAGCCCAGTCACTGCAGTGTTGCA TCCTATGCTGTTCAAGGAAATGGTCAGACCTACAGCTCCACATACAAGAACCCTTCTAAC TGCCCTGCAACTGTCGTAGCTCTTCTGCCTCAGCCTCCAGCTACTGCTTCTATGGCGTAT CATCCCTTGGGACCACAGGTCGTGCACAATCATCCATTTGGAAATATGGTTGAAACGGCT AGTGTGGTAGGGTATTCACGGGACCAAGGTGAGATACTCCCAGTGGTGACTGCAGTACAA CCCGTGATGGTTGATAAGCTTAATGCTGGCAGCAACGTAACATCCCCTCGTGAATGGTCA GCATAG

Peptide Sequence

PEP ID	Zm00001d043906_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:3:213464115:213466548:1 gene:Zm00001d043906 transcript:Zm00001d043906_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline-rich glycoprotein family protein
Sequence	MLAPRENDHITQAPKHEVALLRLHQVNGMQSPAVQVQTSGGFVLQHLVPVSLSTQHDQQQ LNQAPVYYVQSQDHAKSTESKALEPLVQGVQPLVHNPEVMAQVELPQKPNQATELYPQPQ NHRLQMPTQQVDSHTWHPQQPMVQQHQYIIQQVSRHMAQQQSSSPHSQSAQATPLFPPFS SPKPASSNTDPITRSMAGQPPYSSSQQQHEVAHSFYGQGNTILVPVADHNAQHQQSQSVQ LHSQGTCLPQPSKPSHCSVASYAVQGNGQTYSSTYKNPSNCPATVVALLPQPPATASMAY HPLGPQVVHNHPFGNMVETASVVGYSRDQGEILPVVTAVQPVMVDKLNAGSNVTSPREWS A

Transcript Sequence

Transcript ID	Zm00001d043906_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:213464115:213466548:1 gene:Zm00001d043906 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline-rich glycoprotein family protein
Sequence	GCAACAGCGACTCCTCTTTCCCCGCCTCTTCCTCCTCCCGCTTCGGATTCCCAACCCCCC CGCTCAGGCCTCTTCCCTTCACAGCACCAACCCAAAACCCTAGCCGCAACGCCTACGCAT GGCTTCCCCCGCGCGCCCCGCCGCCACCTCCGTCTCCGGCGCCTTCGGCCTTCCCCCCGA CGCGCGCTGCTCCTACGACCAGCCCCGCCGCCGCGAGGGCTTGCAGGACGAGAGGATGGT GCAGACGTTCGTGGCCGCCTACGCGCAGCCGCCGCCGCATCAGGACGGCTTCTACCCAAA GGAAGCCGTGATGGCGGCCGTGGAGGAGTGCATGCGGAAGCAGGCCGACGCGCTGCTGCA CTCGCTCGACGGCATCGGGGGCAGGCTTTCGCAGCTCGAGCTCTACTGCTACAAGCTCGA GAGGTCCATCGGGGAACTGCGCAGCGACGTCATGGACTACCACAGCGAGAGCACCACCAA CTTCAGATGCATCGACAAGAACCTCGGACAGGTGCGTCCGCGCGTGCCTTCTCCGTGCAT CTTGGATCCCGGTGTGCACCACCTGGCTTCTGGAGTACTACTGGTGTGCTAGTGTTCTGG TAATGTCGCCGAGTAATGGCAGACAATGACAGTGCGAGATTTCCAATTTCTCACTAATAT TTGGTGTAAAATGACTTAACTGATTATTTATTTCCCTGAAAGCTAGTACATTCAGTGGAG TCAACTTATGGTTCCCGGAGATGAGATTTGTATCACTTGGCTCTGAGACTAACAGCTACT AGCATCTTTGGTAACTAGATCTACATTTTGGATGCCAGGTCCACAAATCCTTGCAGGTTC TTCAGGATAGGCAGGACTTGGCTGAAACTCCAAAAGAACTCAGCAAACTTCAAATAGCAC ATGAGGCACCCTCTCATCAGAAGGGTGAGGCCACCGGTTTTCCCATGCTTGCGCCAAGGG AAAATGACCACATCACACAAGCTCCAAAACATGAGGTTGCCCTTTTGCGACTTCACCAAG TTAATGGGATGCAGTCCCCTGCCGTGCAGGTCCAAACCAGCGGTGGCTTTGTTCTGCAGC ACCTGGTGCCTGTCTCTTTGAGCACGCAGCATGATCAGCAGCAATTGAACCAGGCTCCTG TGTACTATGTGCAAAGCCAGGATCATGCTAAATCCACAGAGAGCAAGGCGTTGGAACCTT TGGTTCAAGGTGTGCAGCCACTTGTCCACAACCCTGAAGTCATGGCTCAAGTTGAGCTAC CTCAGAAACCTAATCAAGCAACTGAATTGTACCCTCAACCTCAGAATCACAGACTACAGA TGCCTACCCAGCAGGTTGATTCGCATACATGGCATCCCCAACAGCCCATGGTGCAACAGC ACCAATACATTATCCAACAAGTTTCACGACACATGGCTCAACAGCAGTCCTCGTCTCCTC ATTCTCAGAGTGCTCAAGCCACACCCTTGTTTCCTCCATTCAGCTCCCCGAAGCCTGCTA GTTCTAACACTGATCCAATTACAAGAAGTATGGCTGGGCAACCTCCATACTCTTCATCGC AGCAGCAGCATGAAGTCGCCCATTCATTTTATGGCCAAGGCAATACAATATTGGTTCCTG TAGCTGATCATAATGCTCAGCATCAGCAATCGCAATCAGTGCAGCTACACAGCCAGGGCA CCTGTCTACCTCAACCAAGCAAGCCCAGTCACTGCAGTGTTGCATCCTATGCTGTTCAAG GAAATGGTCAGACCTACAGCTCCACATACAAGAACCCTTCTAACTGCCCTGCAACTGTCG TAGCTCTTCTGCCTCAGCCTCCAGCTACTGCTTCTATGGCGTATCATCCCTTGGGACCAC AGGTCGTGCACAATCATCCATTTGGAAATATGGTTGAAACGGCTAGTGTGGTAGGGTATT CACGGGACCAAGGTGAGATACTCCCAGTGGTGACTGCAGTACAACCCGTGATGGTTGATA AGCTTAATGCTGGCAGCAACGTAACATCCCCTCGTGAATGGTCAGCATAGTGGACGATGT GCCATCGTACACTTCACTGCTTCCACAACTTACTACTGCACATATTGCAGTTGGAAGCTC ATCAGGTCTATTTTATCTGGCTCCTTTTTTTCCATCAGCCAGCAGATTAGAATAGATCCT TCTACCTTTTTCAGCTGAAGGTCAGTATGAAATAAGAAAAGTAGGTTAGCTGAGTGATCA CTGTTGGCATATGTCCTCACTTTTAATGGGCATATCTTCTTGTAACCGGTTGCGAACTTA TATGCCTTATATGAATACATGATGGGTTTACAT