Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d043835_T006
CDS Infomation	cds chromosome:B73_RefGen_v4:3:211258240:211305383:1 gene:Zm00001d043835 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA ligase 6
Sequence	ATGGCGTCCCTCCTCTCCTCCCCCGACGATTCCAAGTCGCTGTCCGTCACCACCTCATCG CTCTTCCTCTCCTCCATCGCCTCTCTCCCCTCTTCCCATGCCTTCTCCATCTTCACCTCC GCCTCCACGCCTCTTCCCCCTGTCCCGGTCTCTGTGCCTCCCGCCGCACTCATCCCGGGC TCCCGCTTCCTTGTCGATGCCTTCCGCCATGCCGGAAACTTCTCTGTCGCCTACTTCCTC TCGCACTTCCACTCCGACCACTACAGTGGCCTCGGCCCTTCCTGGCGCCGCGGCCTTGTA TTCTGCTCCGCGCCAACCGCACGCCTCGTCTCATCCGTGCTCTCTGTCCCGCCTCAACTT GTCGTCTCCCTCGATATCGGTGTCCGTATCACCGTTGATGGGTGGGGCGTCACCGCCGTG GACGCCAATCATTGTCCCGGTGCCGTTCAGTTCCTCTTCGCCTCTCCTGGGCCGAGAGCC GAGAGATATGTGCACACCGGTGACTTTCGTTACACAGAGTCTATGACGCGTGATCCTAAC TTGCTGGAGTTCGTCCGTGCTGATGCGGTGTTTCTGGACACCACATACTGCAACCCCAAG TTTACATTCCCTTCGCAAGAGGATTCTGTGGATTACATAGTGAATGCAATCAAACGTGTG AAAGAGGAGAGTTCAGTATCAGGAGAGCGTGTGCTATGTCTGATCGCCACCTATGCTGTC GGCAAGGAGAAGATTTTGCTGGAGGTCGCACAGCGCTGTGGGTGTTCAATCCATGTGGAC AGTAGGAAGATGAAGATTTTGACACTGTTGGGGTTCGGTGGGAAGAATAGCGTTTTTACT GAGGACGCAACAGGGACGGATGTGCATGTTCTTGGGTGGAATTTGTTAGGGGAGACTTCG CCCTACTTCCAGCCGAATTTTGTGAAATTGAAGGAGATCATGATGGAGAGAGGGTATGCT AAGGCTGTTGGGTTTGTACCAACTGGGTGGATGTATGAAACCAAGAAGGAAGGTTTTGCT GTTAGGGTGAAAGATTCACTCGAAATCCATCTTGTTCCTTATAGTGAGCACTCAAGTTAC AATGAGTTGCGCGACTATGTTAAGTTTTTGCACCCAAAGAGTGTGATCCCTACTGCCGGA GTGGATGCTGGGAAGCTCGATAGTAAGGAGGCAGTTGCTCTGCAGAAGCATTTTGCTGGG TTGGTTGATGAGACAGCAAACAAACAGGAGTTCTTGATGGCATTCCATCGTAGGTCAATA GATGCTACTCGTAGCTGCAAAGATGTGGTTGTTAATTGCTCGAGCCAGCTTGATGGGGAG GATGCTGCTTTGTTACCAGCAATCTCTTCTGCTTCTGAACAACAGGATAAACTGATGGAG AATACTATGCAGGAAACACTTAAAGAACTGTCAGATTTCTTACCCTCGTGGGTGAGCCAG GAACAGATCACAGACCTGCTGATGAGTTCTGAAGGTGATGTTGTTAAAGCAGCATCGATT TTTTTTGAGCGGGAAAGAGATTTCTTTGAAGAAGCAAATGTTTCTTGTAATGGCACACCC AAGACAGAGAAAAACCATTCTTCTAATCATGGGTCGTCTGCTGATGTAAGTAGTCAGCAA GAATCTTCTTTATTTTCACAGAAGCCTGTGGAATACTCTGCAAAACTGGTAAATTTGTCT CCTATGAGAATGAAACCAAATACTCCCAAAAAGGTAAATAAGAGGGGTTCCAGCAATACA AACAAGCCAAAAAAGAAAGGCCGATTAACTTCCTCAACAGAATCTGGTGGGCGGAAGCAG TCCACAATTACAAATTATTTCATTAGAGCTACTGAAGCTGCTTTTAAAAGGTGTAGACCT GAAAGAGTAACTGTGGAGGCACATCAAAATAACGTGGAAAACAGTGATCAGTTAGCTGAT ACTGAAAAAACACAAGATCAGATTGTAGACCAGCTTCTCCAGATTGTAGATGGTAGCATG TCTAGAGAATATGCAGTTTATTTGCTTGAGAAGGCAAACGGAGATGTGGCTGTAGCAGTT GACATATTTTACAGTTCAAGTGAGGGTAATAATGTAATTGAGGTTGACAAGAATATTATG CTGCAGAATGCACAAGGTGAAACTGCAGATAATTGTAGTGAAACAGACATGGCTAGTGGT TATTCTCAGGCTACTCCAAAAATGTCAAACTTACATGTAGGAACTTCTTTAGCACATGGA GATTCTGCCAACACATCACTGCTAATTGAAAAGTATCTACCTATTGAACATGCTTGCTGG ATAGCAGGACAGCCTGCACCATACTTGCATTTGGCTCGCACATTTGACTTGGTTGAAAAG GAAAAAGGAAAGATCAAAACTATCGCAATATTTTGCAACATGTTCAGGAGTTTGCTTGCT TTATCCCCTGATGATGTTCTACCTGCTGTTTATCTATGTACTAATAAAATTTCTCCTGAC CATGAAAATATGGAACTGAACATTGGTGGGAGTCTAGTTGTAACTACTCTGGAGGAATCA TTAGGAACCAGCAGATCTAAAATACATGAAATGTACAAAACTTACGGTGATCTTGGTACT GTTGCCCAAGAATGTCGTCAGAATCAAACACTAATTGCTCCTCCCCGTTCTCTCTCGATT TGTGATGTATATTCCACGCTTCGGAAACTAAGTGCAATATCAGGTAGTGGAAGTGCTGGG AGGAGAAAAAATCTTGTCTTGCATCTGATTCGGTCTTGTAGAGAAACAGAAATGAAATTT CTTGTCAGAACACTGGTTCGTAACTTGCGTATTGGGGCTATGATGAAGACGATTTTACCT GCGCTTGCACATGCTGTTGTTTTTGATAGAAACTGTGCAGCAGATCCTGCGGTGTCATTG GAAGGCATAAAATCACAACTACAGAGTCTTTCAACTGAAGTTGCCGAGGCATACAATGTC ACTCCTAATCTAGATTTGCTCATTCCTTCTCTTCTGAGAGAAGGCACTGCATTTTCAGCT TCATCCTTGGCAATGGTGCCTGGCACACCTATTCCACCTATGCTTGCAAGAATTACTAAC GGGTTGACTCAGTCGTTGAAAGCTTTCCATGGCAGATCATTTACTTGTGAGTACAAGTAT GATGGTCAGCGTGCCCAGATTCACAAAGCACTTGATGGATCCGTGCGAATATTTTCAAGG CAAATGAAAGAATCAACTTCCAGATTTCCTGATCTTGTGAATATGATTAAGGAGTTGTGC AAGCCCGAAGTGTCAAGCTTTATACTGGATGCCGAGGTGGTAGGAATTAACAGGAAGAAA GGAAATGAGTTGATGTCGTTCCAAGAGCTATCTTCAAGAGAAAGAGGGAATAAGCATTCC TCAATTTCAATAGAGAACATAAAGGTTGACATTTGTGTGTTTGTTTTTGACATCATGTTC CATGATGGAGAGAGACTACTGGATTGCCCTCTTCGGCAAAGAAGAAAGTACATTCATGAC TTGTTCCATGAGAAGCCAGGATATTTTGAGTTAGCTCAGCAGCTAAATATAGAAGCCTGC GAAGCTTCACCAGACAATTCTAGCACTTTGGCTAGGATGGACACGTTTTTCAGAAATGCA TGCCAGTCTTCTTGTGAGGGTATAATGTTAAAGACTTTGGATGTCGATGCTGGATACTCT GCTTCCAAACGCTGTGATTCATGGTTAAAGGTCAAGCGTGACTATGTGCAAGGCTTAGGT GATAGCCTTGACTTGGTTCCGATTGGTGCATGGTATGGAAACGGACGTAAAGCTGGGTGG TACAGCCCTTTTCTCATGGCATGCTACAACCCTGAAACTGAAGAGTTCCAAAGTGTATGT CGTGTTATGTCTGGTTTCTCGGATGAGTTCTATAAAGAGATGAAGGAGTTCTATTCGGGG GAAAGGATACTGCCCAAGAAGCCTGTTTACTACAAAACAGACGAGCAACCAGAGCTGTGG TTCACCGCAGAACAAATCTGGGAGATCCGAGGTGCAGACCTGACGTTGTCCCCTGTCCAC CATGCGGCCATTGGGCTTGTCCATCCATCGCGCGGCATCTCGGTGAGGATGCCCCGGTAC ATCCGTTCAGTTCCAGACCGGAGCCCAGAGGACTGCGGCACGGCCGCCGATATTGCTAGC ATGTTCAAAGCCCAGACCCGGAAGATGGATGTCAGCAGCGAGGGCCAGGAGTAG

Peptide Sequence

PEP ID	Zm00001d043835_P006
PEP Infomation	pep chromosome:B73_RefGen_v4:3:211258240:211305383:1 gene:Zm00001d043835 transcript:Zm00001d043835_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA ligase 6
Sequence	MASLLSSPDDSKSLSVTTSSLFLSSIASLPSSHAFSIFTSASTPLPPVPVSVPPAALIPG SRFLVDAFRHAGNFSVAYFLSHFHSDHYSGLGPSWRRGLVFCSAPTARLVSSVLSVPPQL VVSLDIGVRITVDGWGVTAVDANHCPGAVQFLFASPGPRAERYVHTGDFRYTESMTRDPN LLEFVRADAVFLDTTYCNPKFTFPSQEDSVDYIVNAIKRVKEESSVSGERVLCLIATYAV GKEKILLEVAQRCGCSIHVDSRKMKILTLLGFGGKNSVFTEDATGTDVHVLGWNLLGETS PYFQPNFVKLKEIMMERGYAKAVGFVPTGWMYETKKEGFAVRVKDSLEIHLVPYSEHSSY NELRDYVKFLHPKSVIPTAGVDAGKLDSKEAVALQKHFAGLVDETANKQEFLMAFHRRSI DATRSCKDVVVNCSSQLDGEDAALLPAISSASEQQDKLMENTMQETLKELSDFLPSWVSQ EQITDLLMSSEGDVVKAASIFFERERDFFEEANVSCNGTPKTEKNHSSNHGSSADVSSQQ ESSLFSQKPVEYSAKLVNLSPMRMKPNTPKKVNKRGSSNTNKPKKKGRLTSSTESGGRKQ STITNYFIRATEAAFKRCRPERVTVEAHQNNVENSDQLADTEKTQDQIVDQLLQIVDGSM SREYAVYLLEKANGDVAVAVDIFYSSSEGNNVIEVDKNIMLQNAQGETADNCSETDMASG YSQATPKMSNLHVGTSLAHGDSANTSLLIEKYLPIEHACWIAGQPAPYLHLARTFDLVEK EKGKIKTIAIFCNMFRSLLALSPDDVLPAVYLCTNKISPDHENMELNIGGSLVVTTLEES LGTSRSKIHEMYKTYGDLGTVAQECRQNQTLIAPPRSLSICDVYSTLRKLSAISGSGSAG RRKNLVLHLIRSCRETEMKFLVRTLVRNLRIGAMMKTILPALAHAVVFDRNCAADPAVSL EGIKSQLQSLSTEVAEAYNVTPNLDLLIPSLLREGTAFSASSLAMVPGTPIPPMLARITN GLTQSLKAFHGRSFTCEYKYDGQRAQIHKALDGSVRIFSRQMKESTSRFPDLVNMIKELC KPEVSSFILDAEVVGINRKKGNELMSFQELSSRERGNKHSSISIENIKVDICVFVFDIMF HDGERLLDCPLRQRRKYIHDLFHEKPGYFELAQQLNIEACEASPDNSSTLARMDTFFRNA CQSSCEGIMLKTLDVDAGYSASKRCDSWLKVKRDYVQGLGDSLDLVPIGAWYGNGRKAGW YSPFLMACYNPETEEFQSVCRVMSGFSDEFYKEMKEFYSGERILPKKPVYYKTDEQPELW FTAEQIWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSVPDRSPEDCGTAADIAS MFKAQTRKMDVSSEGQE

Transcript Sequence

Transcript ID	Zm00001d043835_T006
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:211258240:211305383:1 gene:Zm00001d043835 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA ligase 6
Sequence	ACAGCGCGCGCCACCACCACCGCGCCATGCCGTTCTCCGCCACCGCCGCCGGCGCCTCCA AACCCTAAACCCGCCGCAGCAATCAATGGCGTCCCTCCTCTCCTCCCCCGACGATTCCAA GTCGCTGTCCGTCACCACCTCATCGCTCTTCCTCTCCTCCATCGCCTCTCTCCCCTCTTC CCATGCCTTCTCCATCTTCACCTCCGCCTCCACGCCTCTTCCCCCTGTCCCGGTCTCTGT GCCTCCCGCCGCACTCATCCCGGGCTCCCGCTTCCTTGTCGATGCCTTCCGCCATGCCGG AAACTTCTCTGTCGCCTACTTCCTCTCGCACTTCCACTCCGACCACTACAGTGGCCTCGG CCCTTCCTGGCGCCGCGGCCTTGTATTCTGCTCCGCGCCAACCGCACGCCTCGTCTCATC CGTGCTCTCTGTCCCGCCTCAACTTGTCGTCTCCCTCGATATCGGTGTCCGTATCACCGT TGATGGGTGGGGCGTCACCGCCGTGGACGCCAATCATTGTCCCGGTGCCGTTCAGTTCCT CTTCGCCTCTCCTGGGCCGAGAGCCGAGAGATATGTGCACACCGGTGACTTTCGTTACAC AGAGTCTATGACGCGTGATCCTAACTTGCTGGAGTTCGTCCGTGCTGATGCGGTGTTTCT GGACACCACATACTGCAACCCCAAGTTTACATTCCCTTCGCAAGAGGATTCTGTGGATTA CATAGTGAATGCAATCAAACGTGTGAAAGAGGAGAGTTCAGTATCAGGAGAGCGTGTGCT ATGTCTGATCGCCACCTATGCTGTCGGCAAGGAGAAGATTTTGCTGGAGGTCGCACAGCG CTGTGGGTGTTCAATCCATGTGGACAGTAGGAAGATGAAGATTTTGACACTGTTGGGGTT CGGTGGGAAGAATAGCGTTTTTACTGAGGACGCAACAGGGACGGATGTGCATGTTCTTGG GTGGAATTTGTTAGGGGAGACTTCGCCCTACTTCCAGCCGAATTTTGTGAAATTGAAGGA GATCATGATGGAGAGAGGGTATGCTAAGGCTGTTGGGTTTGTACCAACTGGGTGGATGTA TGAAACCAAGAAGGAAGGTTTTGCTGTTAGGGTGAAAGATTCACTCGAAATCCATCTTGT TCCTTATAGTGAGCACTCAAGTTACAATGAGTTGCGCGACTATGTTAAGTTTTTGCACCC AAAGAGTGTGATCCCTACTGCCGGAGTGGATGCTGGGAAGCTCGATAGTAAGGAGGCAGT TGCTCTGCAGAAGCATTTTGCTGGGTTGGTTGATGAGACAGCAAACAAACAGGAGTTCTT GATGGCATTCCATCGTAGGTCAATAGATGCTACTCGTAGCTGCAAAGATGTGGTTGTTAA TTGCTCGAGCCAGCTTGATGGGGAGGATGCTGCTTTGTTACCAGCAATCTCTTCTGCTTC TGAACAACAGGATAAACTGATGGAGAATACTATGCAGGAAACACTTAAAGAACTGTCAGA TTTCTTACCCTCGTGGGTGAGCCAGGAACAGATCACAGACCTGCTGATGAGTTCTGAAGG TGATGTTGTTAAAGCAGCATCGATTTTTTTTGAGCGGGAAAGAGATTTCTTTGAAGAAGC AAATGTTTCTTGTAATGGCACACCCAAGACAGAGAAAAACCATTCTTCTAATCATGGGTC GTCTGCTGATGTAAGTAGTCAGCAAGAATCTTCTTTATTTTCACAGAAGCCTGTGGAATA CTCTGCAAAACTGGTAAATTTGTCTCCTATGAGAATGAAACCAAATACTCCCAAAAAGGT AAATAAGAGGGGTTCCAGCAATACAAACAAGCCAAAAAAGAAAGGCCGATTAACTTCCTC AACAGAATCTGGTGGGCGGAAGCAGTCCACAATTACAAATTATTTCATTAGAGCTACTGA AGCTGCTTTTAAAAGGTGTAGACCTGAAAGAGTAACTGTGGAGGCACATCAAAATAACGT GGAAAACAGTGATCAGTTAGCTGATACTGAAAAAACACAAGATCAGATTGTAGACCAGCT TCTCCAGATTGTAGATGGTAGCATGTCTAGAGAATATGCAGTTTATTTGCTTGAGAAGGC AAACGGAGATGTGGCTGTAGCAGTTGACATATTTTACAGTTCAAGTGAGGGTAATAATGT AATTGAGGTTGACAAGAATATTATGCTGCAGAATGCACAAGGTGAAACTGCAGATAATTG TAGTGAAACAGACATGGCTAGTGGTTATTCTCAGGCTACTCCAAAAATGTCAAACTTACA TGTAGGAACTTCTTTAGCACATGGAGATTCTGCCAACACATCACTGCTAATTGAAAAGTA TCTACCTATTGAACATGCTTGCTGGATAGCAGGACAGCCTGCACCATACTTGCATTTGGC TCGCACATTTGACTTGGTTGAAAAGGAAAAAGGAAAGATCAAAACTATCGCAATATTTTG CAACATGTTCAGGAGTTTGCTTGCTTTATCCCCTGATGATGTTCTACCTGCTGTTTATCT ATGTACTAATAAAATTTCTCCTGACCATGAAAATATGGAACTGAACATTGGTGGGAGTCT AGTTGTAACTACTCTGGAGGAATCATTAGGAACCAGCAGATCTAAAATACATGAAATGTA CAAAACTTACGGTGATCTTGGTACTGTTGCCCAAGAATGTCGTCAGAATCAAACACTAAT TGCTCCTCCCCGTTCTCTCTCGATTTGTGATGTATATTCCACGCTTCGGAAACTAAGTGC AATATCAGGTAGTGGAAGTGCTGGGAGGAGAAAAAATCTTGTCTTGCATCTGATTCGGTC TTGTAGAGAAACAGAAATGAAATTTCTTGTCAGAACACTGGTTCGTAACTTGCGTATTGG GGCTATGATGAAGACGATTTTACCTGCGCTTGCACATGCTGTTGTTTTTGATAGAAACTG TGCAGCAGATCCTGCGGTGTCATTGGAAGGCATAAAATCACAACTACAGAGTCTTTCAAC TGAAGTTGCCGAGGCATACAATGTCACTCCTAATCTAGATTTGCTCATTCCTTCTCTTCT GAGAGAAGGCACTGCATTTTCAGCTTCATCCTTGGCAATGGTGCCTGGCACACCTATTCC ACCTATGCTTGCAAGAATTACTAACGGGTTGACTCAGTCGTTGAAAGCTTTCCATGGCAG ATCATTTACTTGTGAGTACAAGTATGATGGTCAGCGTGCCCAGATTCACAAAGCACTTGA TGGATCCGTGCGAATATTTTCAAGGCAAATGAAAGAATCAACTTCCAGATTTCCTGATCT TGTGAATATGATTAAGGAGTTGTGCAAGCCCGAAGTGTCAAGCTTTATACTGGATGCCGA GGTGGTAGGAATTAACAGGAAGAAAGGAAATGAGTTGATGTCGTTCCAAGAGCTATCTTC AAGAGAAAGAGGGAATAAGCATTCCTCAATTTCAATAGAGAACATAAAGGTTGACATTTG TGTGTTTGTTTTTGACATCATGTTCCATGATGGAGAGAGACTACTGGATTGCCCTCTTCG GCAAAGAAGAAAGTACATTCATGACTTGTTCCATGAGAAGCCAGGATATTTTGAGTTAGC TCAGCAGCTAAATATAGAAGCCTGCGAAGCTTCACCAGACAATTCTAGCACTTTGGCTAG GATGGACACGTTTTTCAGAAATGCATGCCAGTCTTCTTGTGAGGGTATAATGTTAAAGAC TTTGGATGTCGATGCTGGATACTCTGCTTCCAAACGCTGTGATTCATGGTTAAAGGTCAA GCGTGACTATGTGCAAGGCTTAGGTGATAGCCTTGACTTGGTTCCGATTGGTGCATGGTA TGGAAACGGACGTAAAGCTGGGTGGTACAGCCCTTTTCTCATGGCATGCTACAACCCTGA AACTGAAGAGTTCCAAAGTGTATGTCGTGTTATGTCTGGTTTCTCGGATGAGTTCTATAA AGAGATGAAGGAGTTCTATTCGGGGGAAAGGATACTGCCCAAGAAGCCTGTTTACTACAA AACAGACGAGCAACCAGAGCTGTGGTTCACCGCAGAACAAATCTGGGAGATCCGAGGTGC AGACCTGACGTTGTCCCCTGTCCACCATGCGGCCATTGGGCTTGTCCATCCATCGCGCGG CATCTCGGTGAGGATGCCCCGGTACATCCGTTCAGTTCCAGACCGGAGCCCAGAGGACTG CGGCACGGCCGCCGATATTGCTAGCATGTTCAAAGCCCAGACCCGGAAGATGGATGTCAG CAGCGAGGGCCAGGAGTAGTAGGCAATGCAAAGCTCAGCCCATTTCCTCGTCCTAGCTTT GCTTATGTTCACCAGTTCTGTATATACACAGAACGAACCAGGGTGAAGTGAACCACCCTA CTGATCAAATGGTGAAAACTGAAGCGTAGGACAGGCAGCACTGATCCCACTGGCTTTCAA TTTTTCTTTGTACAGAAACTGAATGCAGTTGGAACGCGGAAGGAAGCCCACGAGTTGCAC GTTCGGGGGGAAAAAAACAATGCATAAGTACATCAGGTATCAGCTTGCTTTGTACTACAG CGCGATTATTGTAACGCCCGTGGCCGCCGGCGAGTCAGCCGTTGACGTGAGCACAGATTT GGTGGGAAGCGCCGGCGAGGATTGCGTCGGCCTGTGCGCGTTCGTGTTTCTGAATATCTG AATCGATCGTCTATTACAAGT