Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043797_T027
CDS Infomation

cds chromosome:B73_RefGen_v4:3:210384863:210393095:-1 gene:Zm00001d043797 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair helicase XPB1
Sequence

ATGGCCGGCGGCGACGGCGATCGGCATCGCGCGCCGAAGCGGCACAAGTCCTCGACGCCG
TCGAAAGCGGCCCTGGTGGACGAGAGCGCCGAGTTCGACTACGCTGATGACTTTGATGAC
GACGCCCACGATGCTGATACGGAGGTTAAGAAGAGGGATTTTACGAAGCTCGAGTTGAAG
GTGGACCACGCGAGCCGTCCGCTCTGGGCGTGCGCCGACGGCCGCATCTTCCTCGAGACC
TTCTCGCCGCTCTACAAGCAGGCTTACGATTTTCTCATCGCCATCGCCGAGCCTGTGTGC
AGGCCAGAATCTATGCATGAATACAATCTAACTCCCCACTCATTGTATGCTGCGGTCTCA
GTGGGACTTGAGACAAGCACTATCATCAGTGTCTTGAGTAAACTATCTAAAACCAAGTTG
CCCCGTGAAATAATTGATTTCATCCATGGATCAACTGCTAACTACGGCAAAGTCAAGCTT
GTCTTGAAGAAGAACCGATATTTTGTCGAGTCTCCATTTCCTGAGGTATTGAGTACCCTT
CTGAGGGATGAAGTTATATCTAGAGCTAGGATATCTCCTGAGGATTCCCTTGGGGCACCT
TCATTTACTGTTAGCAAGACATCTGGCCAAATAGCTAGTGGACATGAAGACCTGTTAAAT
GGAATGGAAATTGCTGCTGCAACTGAAGACAAGGAAACACATTCTTTTGAGATTGATCCT
TCTCAGGTTGAGAATGTCAAGCAACGGTGCTTACCAAATGCATTGAACTATCCCATGCTG
GAGGAGTATGATTTCAGAAATGACACTGTAAACCCAGATTTGGATATGGAGCTAAAGCCG
CAAGCACGGCCTAGGCCATATCAAGAAAAGAGTCTCAGTAAAATGTTTGGGAACGGACGA
GCAAGGTCTGGAATTATTGTGCTACCTTGTGGTGCTGGCAAGTCCTTGGTTGGTGTATCT
GCAGCCTGTCGTATTAAGAAGAGCTGTTTATGTTTGGCCACAAATGCTGTCTCCGTAGAT
CAATGGGCATTTCAGTTCAAGCTTTGGTCGACCATAAAAGATGAGAACATTAGTCGTTTT
ACATCTGATAACAAGGAGAAGTTTACAGGGATGGCTGGTGTGGTTGTTACTACATATAAC
ATGGTTGCATTCGGTGGTAAAAGGTCTGAAGATTCGGAGAAGATCATTGAAGAAATCCGA
AACAGAGAGTGGGGCTTGCTTCTAATGGATGAGGTCCATGTTGTCCCTGCACATATGTTC
AGAAAAGTCATCAGCATTACTAAATCTCACTGCAAGCTGGGTCTTACTGCTACCCTTGTG
AGAGAGGACGAACGTATTACTGACCTGAATTTTCTAATTGGACCAAAACTGTATGAAGCG
AATTGGTTGGATTTAGTCAAAGGTGGATTTATTGCAAATGTGCAGTGTGCAGAAGTATGG
TGTCCTATGACCAAAGAGTTCTTTGCTGAGTATTTGAAAAAGGAAAATTCAAAGAAGAAG
CAGGTACTGTATGTCATGAATCCGAACAAGTTCAGGGCTTGTGAATTCCTGATTCGATTC
CATGAGCAACAACGTGGAGACAAGATAATTGTGTTTGCTGATAATCTGTTTGCACTAACT
ACTTATGCGATGAAACTGCGCAAGCCAATGATTTTTGGTGCCACAAGCCATGCTGAGAGG
ACAAGAATTCTCTACCAATTCAAGAACAGTCCAGAAGTCAATACAATTTTTCTTTCAAAG
GTCGGTGATAACTCGATTGATATCCCAGAAGCTAATGTTATCATACAAATATCATCTCAC
GCTGGTTCGAGACGTCAAGAAGCTCAGCGTCTGGGCCGTATTCTCAGAGCAAAGGTACTG
TTGGCTGCTGCTTACTACCATTCCCTCAGTTTGTTGACAAGCTCAATTGCCGCACTTGAT
CCTTTGGCATTCAAAATTCTGTGTGGGTGGTTGTGTTCCTTTTGGCACTCAAAATTAATG
TGGACATTTATATTCCACTCATGTGGGAGCCTCCGGCACTGA

Peptide Sequence

PEP ID

Zm00001d043797_P027
PEP Infomation

pep chromosome:B73_RefGen_v4:3:210384863:210393095:-1 gene:Zm00001d043797 transcript:Zm00001d043797_T027 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair helicase XPB1
Sequence

MAGGDGDRHRAPKRHKSSTPSKAALVDESAEFDYADDFDDDAHDADTEVKKRDFTKLELK
VDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
VGLETSTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLSTL
LRDEVISRARISPEDSLGAPSFTVSKTSGQIASGHEDLLNGMEIAAATEDKETHSFEIDP
SQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGR
ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDENISRF
TSDNKEKFTGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMF
RKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW
CPMTKEFFAEYLKKENSKKKQVLYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT
TYAMKLRKPMIFGATSHAERTRILYQFKNSPEVNTIFLSKVGDNSIDIPEANVIIQISSH
AGSRRQEAQRLGRILRAKVLLAAAYYHSLSLLTSSIAALDPLAFKILCGWLCSFWHSKLM
WTFIFHSCGSLRH

Transcript Sequence

Transcript ID

Zm00001d043797_T027
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:210384863:210393095:-1 gene:Zm00001d043797 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair helicase XPB1
Sequence

GCGGGAGTTCGGCACGCTGCATCAAAGCCGACGCACCGCAGACTGCTTCGCTGAATCGTA
TTCTCAACAGTTCTCACCGCGACACCGCCCATCCTCTCTCCGACATCGATTCGCGCCGAG
CCGCCGACCACCTGCCGCCGTCTCCTCCTTGGTCCCAGCCATGGCCGGCGGCGACGGCGA
TCGGCATCGCGCGCCGAAGCGGCACAAGTCCTCGACGCCGTCGAAAGCGGCCCTGGTGGA
CGAGAGCGCCGAGTTCGACTACGCTGATGACTTTGATGACGACGCCCACGATGCTGATAC
GGAGGTTAAGAAGAGGGATTTTACGAAGCTCGAGTTGAAGGTGGACCACGCGAGCCGTCC
GCTCTGGGCGTGCGCCGACGGCCGCATCTTCCTCGAGACCTTCTCGCCGCTCTACAAGCA
GGCTTACGATTTTCTCATCGCCATCGCCGAGCCTGTGTGCAGGCCAGAATCTATGCATGA
ATACAATCTAACTCCCCACTCATTGTATGCTGCGGTCTCAGTGGGACTTGAGACAAGCAC
TATCATCAGTGTCTTGAGTAAACTATCTAAAACCAAGTTGCCCCGTGAAATAATTGATTT
CATCCATGGATCAACTGCTAACTACGGCAAAGTCAAGCTTGTCTTGAAGAAGAACCGATA
TTTTGTCGAGTCTCCATTTCCTGAGGTATTGAGTACCCTTCTGAGGGATGAAGTTATATC
TAGAGCTAGGATATCTCCTGAGGATTCCCTTGGGGCACCTTCATTTACTGTTAGCAAGAC
ATCTGGCCAAATAGCTAGTGGACATGAAGACCTGTTAAATGGAATGGAAATTGCTGCTGC
AACTGAAGACAAGGAAACACATTCTTTTGAGATTGATCCTTCTCAGGTTGAGAATGTCAA
GCAACGGTGCTTACCAAATGCATTGAACTATCCCATGCTGGAGGAGTATGATTTCAGAAA
TGACACTGTAAACCCAGATTTGGATATGGAGCTAAAGCCGCAAGCACGGCCTAGGCCATA
TCAAGAAAAGAGTCTCAGTAAAATGTTTGGGAACGGACGAGCAAGGTCTGGAATTATTGT
GCTACCTTGTGGTGCTGGCAAGTCCTTGGTTGGTGTATCTGCAGCCTGTCGTATTAAGAA
GAGCTGTTTATGTTTGGCCACAAATGCTGTCTCCGTAGATCAATGGGCATTTCAGTTCAA
GCTTTGGTCGACCATAAAAGATGAGAACATTAGTCGTTTTACATCTGATAACAAGGAGAA
GTTTACAGGGATGGCTGGTGTGGTTGTTACTACATATAACATGGTTGCATTCGGTGGTAA
AAGGTCTGAAGATTCGGAGAAGATCATTGAAGAAATCCGAAACAGAGAGTGGGGCTTGCT
TCTAATGGATGAGGTCCATGTTGTCCCTGCACATATGTTCAGAAAAGTCATCAGCATTAC
TAAATCTCACTGCAAGCTGGGTCTTACTGCTACCCTTGTGAGAGAGGACGAACGTATTAC
TGACCTGAATTTTCTAATTGGACCAAAACTGTATGAAGCGAATTGGTTGGATTTAGTCAA
AGGTGGATTTATTGCAAATGTGCAGTGTGCAGAAGTATGGTGTCCTATGACCAAAGAGTT
CTTTGCTGAGTATTTGAAAAAGGAAAATTCAAAGAAGAAGCAGGTACTGTATGTCATGAA
TCCGAACAAGTTCAGGGCTTGTGAATTCCTGATTCGATTCCATGAGCAACAACGTGGAGA
CAAGATAATTGTGTTTGCTGATAATCTGTTTGCACTAACTACTTATGCGATGAAACTGCG
CAAGCCAATGATTTTTGGTGCCACAAGCCATGCTGAGAGGACAAGAATTCTCTACCAATT
CAAGAACAGTCCAGAAGTCAATACAATTTTTCTTTCAAAGGTCGGTGATAACTCGATTGA
TATCCCAGAAGCTAATGTTATCATACAAATATCATCTCACGCTGGTTCGAGACGTCAAGA
AGCTCAGCGTCTGGGCCGTATTCTCAGAGCAAAGGTACTGTTGGCTGCTGCTTACTACCA
TTCCCTCAGTTTGTTGACAAGCTCAATTGCCGCACTTGATCCTTTGGCATTCAAAATTCT
GTGTGGGTGGTTGTGTTCCTTTTGGCACTCAAAATTAATGTGGACATTTATATTCCACTC
ATGTGGGAGCCTCCGGCACTGAGCCTGTCCTTTTTTATTTGTATTCCAGGTTCTTGAGTT
CATCATGAATGCAAACACATTATGATGAAAAGTCTTGCTACTAGAAAGAGATTCTTAGAG
GAAATTTCTCATTTAGTTTCAACTAGCAAGTAACACAGTAAACCTCAATGGTATTAATGT
CGTATCGACACCTGACAATATATTGGATTGATTTTACTGTTGTGATGTTGCATGCCTTGC
AATAGCCCCTCCCGTGTTTGTAAATTCGAACATGCCACGTGGTGTCAGAAATGAAAAGTG
AACTCACGTTTAGGTTTTAATTTTGTCACGAAGCATGAATGCAGGACCCACAACCAAAAA
AAAAAACTGAGAACATCTGATGGTGAGAGAAATCTGCCTTTTTAATTGCATTCTTTGTTG
TTGTTGTGGATCACACTAAGGTCTTGTTCGTTTGTGCCGGATCGATGGGTCGGAACGATT
CCTAACCGGATTGCTTCTCTAATTTATATAAACTTTGATTAGCTGGAACGATTCCGGGTA
CAATCCGACACAAACGAACAAGGTCTAAACGACTTTGCACTGTGACCTCCAACCATGGAA
CCCTCCGCCTATGGTTTGATGCACCACTTCAGCTGCTCTAACTGAATTATCGCTGATGAT
GACCTGGTATTTGGAATAGTTGCACATAGGTGTTCATGTATATGCACACTACCTTATTTA
CCTGTATAGAGCTCCCGGGTTACGTCCTGCGCGCCACCCTCCGGCTGGGCCGTTTTTGAG
TGGGCGGTCCCTCCGGCTGGGCCGTTGCAGAGTGGGCGGTGACGACCCGCTAGTGATGGG
GGCCAGAGTTCGGGGATTTTCTCGGCCAGGACCATGTTTCGGTCTCTTCTTAATATAATA
TCGGGAGGACGGTCTTTCCCTACCCGACCTAGTTTTTAGAGCTACCATCGTGTAGTTAAG
TTTCAGCTTATAGTTATCAGATTAATTACCTTGATTTGGCTAATCAAATTGGGAAAAATT
GTAGGGAGTATGGAACGCAGCTTACAGCATTCCTTTAATGAATATCATGAATTATATTCT
CGTTCCTGTAAATTCTGTGACTTCAGGGTAAACACCAAGATAGGATGGCTGGAGGAAAAG
AAGAATACAATGCTTTTTTCTATTCCCTTGTATCAACTGACACACAGGAAATGTACTACT
CAACAAAAAGGCAGCAGTTTCTTATTGACCAGGGATATAGCTTCAAGGTTATCACTAGTT
TGCCGCCGGCTGAAGAAGGACCTAATCTGAGCTATTACACACTTGATGAACAACTTGAGC
TCTTGAGCATGGTGGGGCATTTCTGTACTCACTGGTCGTAGTTTTGTTGGCTATTATTAA
TCGTGTGCAGATGGCCCCATTCACCTCTACCAACAGGCGCTGAATGCAGGGGATGACATG
ATTGGTGTTGAGCGCTTAGAAGAAGATTCTGATGGCAAGGCTCTTATTAGAGCACGACGC
TCTGCCGGATCAATGAGTGCCTTCTCTGGAGCTGGTGGAATGGTCTACATGGAGTACAGC
ACTGGGAAGGGAAAGGGTGTTCAGAAGAAACACAAGGACCCGTCAAAGAGGCATCATCTG
TTCAAGAAACGCTATGCGTAGCCTGTTGTGCTTTGCTAGAAATGATTTGGTTCATGACAA
CCTTGTTTTGGCATCAAAGTCGTTGGTTTAAACACACAAGCCCATGTTATGCACAGTTGT
TGCTCTTGGTTAGGACCATCCTAAAGCAATTGTTTTCTCTGTTTGAGCAAGGTTACTGAG
CTACTGTAGCGAAGAACAATTTTGGTCTCAGGTTTACACATGCTGCTTAAAGTTGGCATA
CCCGGCTTTCGGGCGGGACAACAGGACGTGTCTTCTTGAATTGCCTTGTATTATACAAGT
ATAAACAAACAAAC