Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043780_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:210000302:210002017:1 gene:Zm00001d043780 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:threonine synthase1 description: threonine synthase1
Sequence

ATGGCGACCTTCACCGCGGCCTCCTCCCTCTCCCTCCTCTTCTCCCACCCGCACTCCCAC
TCCCGCCAACCATCCGCCCAGGGGCCCACCGCCAGCTCCCACCTCCACCTGCATCCGCGC
GCCAGCCGCGCGCGCTGCGCCTCTTCCGACACGACGGCCACGAAGCACCGCCGCCCAGCG
GAGGAGAACATCCGCGAGGAGGCGGCGCGGCTCCGAGGCCCGGCCCAGGGTTTCTCTGCG
TGGTACGAGCCCTTCCCGCCGGCGCCCGGCGGCGACCCGAACGAGCGCTACTCGCTGGAC
GAGGTCGTCTACCGCTCCAGCTCGGGGGGCCTCCTCGACGTGCGCCACGACATGGAGGCG
CTGGCCCGCTACCCGGGGTCCTACTGGCGTGACCTCTTCGACTCCCGCGTCGGCCGCACC
GCCTGGCCCTACGGCTCGGGCGTCTGGTCCAAGAAGGAGTTCGTGCTCCCCGAGATCGAC
TCCGACCACATCGTCTCCCTCTTCGAGGGCAACTCCAACCTCTTCTGGGCGGAGCGCCTC
GGCCGCGAGCACCTCGGCGGGATGAACGACCTCTGGGTCAAGCACTGTGGCATCTCCCAC
ACGGGCTCCTTCAAGGACCTCGGCATGACGGTGCTCGTCAGCCAGGTGAACCGCCTCCGC
CGCGCGCCGCTCTCGCGCCCCATCGCCGGTGTCGGCTGCGCGTCCACGGGAGACACCTCC
GCCGCGCTCTCGGCCTACTGCGCAGCCGCGGGAATCCCCGCCATCGTGTTCCTGCCAGCG
GACCGCATCTCGCTGCAGCAGCTCATCCAGCCGATCGCCAACGGCGCCACCGTGCTCTCT
CTAGACACTGATTTTGATGGCTGCATGCGGCTCATTCGCGAGGTCACTGCAGAGCTGCCA
ATCTACCTTGCCAATTCGCTCAACCCGCTCCGCCTTGAGGGGCAGAAGACAGCGGCCATC
GAGATATTGCAGCAGTTCAATTGGCAGGTGCCAGATTGGGTCATTGTTCCAGGAGGCAAT
CTTGGGAATATCTATGCATTCTACAAGGGGTTTGAGATGTGCCGCGTTCTTGGACTTGTT
GATCGCGTGCCACGGCTTGTCTGCGCACAGGCTGCAAATGCAAATCCATTGTACCGGTAC
TACAAGTCAGGTTGGACTGAGTTTGAGCCACAAACTGCCGAGACTACATTTGCATCTGCG
ATACAGATTGGTGATCCTGTATCTGTTGACCGTGCGGTGGTCGCGCTGAAGGCCACTGAC
GGTATTGTGGAGGAGGCTACAGAGGAGGAGCTAATGGATGCAACGGCGCTTGCTGACCGC
ACTGGGATGTTTGCTTGCCCACATACTGGGGTTGCACTTGCTGCTTTGTTTAAGCTTCAG
GGTCAGCGTATAATTGGCCCTAATGACCGCACTGTGGTTGTTAGCACAGCTCATGGGCTG
AAGTTCACGCAGTCAAAGATTGACTACCATGACAAAAACATCAAAGACATGGTTTGCCAG
TATGCTAATCCACCGATCAGTGTGAAGGCTGACTTTGGTTCTGTGATGGATGTTCTCCAG
AAAAATCTCAATGGTAAGATATAA

Peptide Sequence

PEP ID

Zm00001d043780_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:210000302:210002017:1 gene:Zm00001d043780 transcript:Zm00001d043780_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:threonine synthase1 description: threonine synthase1
Sequence

MATFTAASSLSLLFSHPHSHSRQPSAQGPTASSHLHLHPRASRARCASSDTTATKHRRPA
EENIREEAARLRGPAQGFSAWYEPFPPAPGGDPNERYSLDEVVYRSSSGGLLDVRHDMEA
LARYPGSYWRDLFDSRVGRTAWPYGSGVWSKKEFVLPEIDSDHIVSLFEGNSNLFWAERL
GREHLGGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPIAGVGCASTGDTS
AALSAYCAAAGIPAIVFLPADRISLQQLIQPIANGATVLSLDTDFDGCMRLIREVTAELP
IYLANSLNPLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFEMCRVLGLV
DRVPRLVCAQAANANPLYRYYKSGWTEFEPQTAETTFASAIQIGDPVSVDRAVVALKATD
GIVEEATEEELMDATALADRTGMFACPHTGVALAALFKLQGQRIIGPNDRTVVVSTAHGL
KFTQSKIDYHDKNIKDMVCQYANPPISVKADFGSVMDVLQKNLNGKI

Transcript Sequence

Transcript ID

Zm00001d043780_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:210000302:210002017:1 gene:Zm00001d043780 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:threonine synthase1 description: threonine synthase1
Sequence

CTGACAGACACGACACCGCCTCTCCAAAAAAAAGCCTAAACCCTCCTCGACGTCACCAGC
GTCCGCCCCTATCGCCCCCCTTCGGCCTTCCCCACTGTACTCTCCAATCTCGCCGCCAAG
CCTCACCGCACCATGGCGACCTTCACCGCGGCCTCCTCCCTCTCCCTCCTCTTCTCCCAC
CCGCACTCCCACTCCCGCCAACCATCCGCCCAGGGGCCCACCGCCAGCTCCCACCTCCAC
CTGCATCCGCGCGCCAGCCGCGCGCGCTGCGCCTCTTCCGACACGACGGCCACGAAGCAC
CGCCGCCCAGCGGAGGAGAACATCCGCGAGGAGGCGGCGCGGCTCCGAGGCCCGGCCCAG
GGTTTCTCTGCGTGGTACGAGCCCTTCCCGCCGGCGCCCGGCGGCGACCCGAACGAGCGC
TACTCGCTGGACGAGGTCGTCTACCGCTCCAGCTCGGGGGGCCTCCTCGACGTGCGCCAC
GACATGGAGGCGCTGGCCCGCTACCCGGGGTCCTACTGGCGTGACCTCTTCGACTCCCGC
GTCGGCCGCACCGCCTGGCCCTACGGCTCGGGCGTCTGGTCCAAGAAGGAGTTCGTGCTC
CCCGAGATCGACTCCGACCACATCGTCTCCCTCTTCGAGGGCAACTCCAACCTCTTCTGG
GCGGAGCGCCTCGGCCGCGAGCACCTCGGCGGGATGAACGACCTCTGGGTCAAGCACTGT
GGCATCTCCCACACGGGCTCCTTCAAGGACCTCGGCATGACGGTGCTCGTCAGCCAGGTG
AACCGCCTCCGCCGCGCGCCGCTCTCGCGCCCCATCGCCGGTGTCGGCTGCGCGTCCACG
GGAGACACCTCCGCCGCGCTCTCGGCCTACTGCGCAGCCGCGGGAATCCCCGCCATCGTG
TTCCTGCCAGCGGACCGCATCTCGCTGCAGCAGCTCATCCAGCCGATCGCCAACGGCGCC
ACCGTGCTCTCTCTAGACACTGATTTTGATGGCTGCATGCGGCTCATTCGCGAGGTCACT
GCAGAGCTGCCAATCTACCTTGCCAATTCGCTCAACCCGCTCCGCCTTGAGGGGCAGAAG
ACAGCGGCCATCGAGATATTGCAGCAGTTCAATTGGCAGGTGCCAGATTGGGTCATTGTT
CCAGGAGGCAATCTTGGGAATATCTATGCATTCTACAAGGGGTTTGAGATGTGCCGCGTT
CTTGGACTTGTTGATCGCGTGCCACGGCTTGTCTGCGCACAGGCTGCAAATGCAAATCCA
TTGTACCGGTACTACAAGTCAGGTTGGACTGAGTTTGAGCCACAAACTGCCGAGACTACA
TTTGCATCTGCGATACAGATTGGTGATCCTGTATCTGTTGACCGTGCGGTGGTCGCGCTG
AAGGCCACTGACGGTATTGTGGAGGAGGCTACAGAGGAGGAGCTAATGGATGCAACGGCG
CTTGCTGACCGCACTGGGATGTTTGCTTGCCCACATACTGGGGTTGCACTTGCTGCTTTG
TTTAAGCTTCAGGGTCAGCGTATAATTGGCCCTAATGACCGCACTGTGGTTGTTAGCACA
GCTCATGGGCTGAAGTTCACGCAGTCAAAGATTGACTACCATGACAAAAACATCAAAGAC
ATGGTTTGCCAGTATGCTAATCCACCGATCAGTGTGAAGGCTGACTTTGGTTCTGTGATG
GATGTTCTCCAGAAAAATCTCAATGGTAAGATATAA