Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043566_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:3:204183565:204191295:1 gene:Zm00001d043566 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein STICHEL-like 3
Sequence

ATGGCCGGCCGCAGCCTTTCGTGCGGCCTCTCCGACTCCAAGTCGGCGGCGGGGCGAAAG
TCCGAAGCGCCCGCCGCCTCAGGTGTCCGTCCCCTTTTCCCCGTTAAGTCCGAGAGGCTG
GCTTCGTCGACCAGTTCGGACTCGGACGCGCTGCCCCTGCTTGTTGAGGAGGCTGCCACC
TCCGGTGCTCGCAAACGCATTGGCGTCATTTCTTCTGGAAGCTACTCCGGAGAGCTTGGG
ATTTTCTCTAACCAGACAAGCGAGATGGACTCCGACCTGCTGTCTGAGTCTCAGTCGGGG
CACAAGTCACTGGCCTCGCGCTCGCAGCATGGCCGTGGGCGTCATCGTAGCCTGACACAG
AAGTTCGCACCAAAGACGTTCAAAGACGTTGTTGGCCAGAGCTTGGTGGTGCAGGCGCTG
TCCAACGCCATCCTGAGGAGGAAGATTGGGTTGGTGTATGTATTCTATGGTCCGCACGGC
ACGGGCAAGACTTCGTGCGCCCGTGTCTTTGCCAAGGCGCTCAATTGCCTCTCCTCTGAG
CACCCCAGGCCCTGTGACTCATGCACGTCGTGCATTGCTCACAATCTCGGCAAGAGCAGG
AGCCTGATGGAGATTGGGCCGGTTGGCAACATCGACATGGAGGGCATTGTGGACGTCCTC
GATAATGTGATGCTTTCACCTGCACCATCACACTACAGGGTGTTTATATTTGATGACTGT
GATACTCTGCCAGCTGACACTTGGAGTGCTATCTCAAAAGTTGTGGACCGGGCACCCCGT
CGAGTTGTGTTTATCCTTGTCAGTCCAAACCTTGAACTTCCTCACATCATCCTGTCGAGA
TGCCAGAAGTTCTTTTTCCCAAAGCTGAGGGAGTCCGACATTGTCAATACATTGCAGTGG
ATTTGCACCAGCGAGAGTCTAGATGTTGATAAAGATGCAATGAAGCTAATTGCATCTCGT
TCCGATGGATCTTTGAGGGATGCCGAGATGACTCTTGATCAACTCAGTTTGCTTGGACAA
AGGATTTCCTTGTCTCTTGTCCAAGAATTGGTTGGTCTGGTGTCTGATGATAAACTGGTC
GATTTGCTTGATTTGGCTCTATCTGCCGACATGGTGAACACAGTGAAGACACTACGAGAC
ATCACAGAAACCGGCGTTGAGCCTTTAGCACTGATGTCTCAGCTTGCCACAATAATTACT
GATATTCTTGCTGGTTCGTATGCATTTACTCGAGAAAGGCCCAGGAGAAAGTTCTTCAAA
CGTCCTACCTTGTCAAAGGAAGATATGGAAAAACTACGTCAGGCCTTGAAAACACTATCT
GAAGCTGAAAAGCAGTTGAGGGTTTCTAGTGACAAGACAACCTGGCTTACAGCTGCTCTG
CTTCAGCTTGCTCCTGATAAGCAGTACCTGCTGCCTAGTTCATCAACTAGTACAAGTTTG
AACCATGGTGTGCTGGTTGGTCCCTTTCCTGATAGGGGTGTAGGGAGGGCCCCAGCAGTT
GAGAATAAAGGTAACCTGGCAGGCACGTCTTATGGGGAAAAGAGAACTGTTGAACACACA
GAAAATGGTCATGTGTTGTCAACCAGTTCTGTCAGAGCAAATGAGGGAACTAAACTCAGA
AAAGCGGAAAATGAAATGGTCTGGCAAGCTGTGCTTGAGAGTATCCAATCAGATACATTG
AGAAAAATGATGGCTAAAGAGGCCAGGCTAAACTCTATCAGCCTTGGAACAGGTAAGGTT
CTCAATCTGTCATCCATATCAGTCTTTGCAACCATCACAATTTTCCAAGAATAA

Peptide Sequence

PEP ID

Zm00001d043566_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:3:204183565:204191295:1 gene:Zm00001d043566 transcript:Zm00001d043566_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein STICHEL-like 3
Sequence

MAGRSLSCGLSDSKSAAGRKSEAPAASGVRPLFPVKSERLASSTSSDSDALPLLVEEAAT
SGARKRIGVISSGSYSGELGIFSNQTSEMDSDLLSESQSGHKSLASRSQHGRGRHRSLTQ
KFAPKTFKDVVGQSLVVQALSNAILRRKIGLVYVFYGPHGTGKTSCARVFAKALNCLSSE
HPRPCDSCTSCIAHNLGKSRSLMEIGPVGNIDMEGIVDVLDNVMLSPAPSHYRVFIFDDC
DTLPADTWSAISKVVDRAPRRVVFILVSPNLELPHIILSRCQKFFFPKLRESDIVNTLQW
ICTSESLDVDKDAMKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVGLVSDDKLV
DLLDLALSADMVNTVKTLRDITETGVEPLALMSQLATIITDILAGSYAFTRERPRRKFFK
RPTLSKEDMEKLRQALKTLSEAEKQLRVSSDKTTWLTAALLQLAPDKQYLLPSSSTSTSL
NHGVLVGPFPDRGVGRAPAVENKGNLAGTSYGEKRTVEHTENGHVLSTSSVRANEGTKLR
KAENEMVWQAVLESIQSDTLRKMMAKEARLNSISLGTGKVLNLSSISVFATITIFQE

Transcript Sequence

Transcript ID

Zm00001d043566_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:204183565:204191295:1 gene:Zm00001d043566 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein STICHEL-like 3
Sequence

ATGGCACCGACGACGACGACGACGACGACGCCGATCTCCCCGCCAAGTCCCGCCGCAGCG
CCGGGGCGCTCAAGACGCTCCTGGACCAGCTAGCCGAGAACCCCCATCCGAAGCCCGGCC
GCCGCCCGCCCCGCCGGTTCAAACGTCGGGCAGGCCGCCGCGCCGCCGCTGCCAGCAAGC
CTCCAGACCGCGCGGCCGCGCTCTCCGTCAACTCCAGCTCCCAGGAGGCCGTCTGCGGCA
ACAAATACCTGTTCCATGGCGGCGGCGGCGGCGACGACGACGGCGATGGCGTGGTGGAGC
TGCAGCAGCATTTGCCGCAGGACTCGCGCAACGTCTGTGGCATTCCATGGAACTGGTCGC
GTCTGCACCACCGGGGCAAGTCTATCCTCGACATGGCCGGCCGCAGCCTTTCGTGCGGCC
TCTCCGACTCCAAGTCGGCGGCGGGGCGAAAGTCCGAAGCGCCCGCCGCCTCAGGTGTCC
GTCCCCTTTTCCCCGTTAAGTCCGAGAGGCTGGCTTCGTCGACCAGTTCGGACTCGGACG
CGCTGCCCCTGCTTGTTGAGGAGGCTGCCACCTCCGGTGCTCGCAAACGCATTGGCGTCA
TTTCTTCTGGAAGCTACTCCGGAGAGCTTGGGATTTTCTCTAACCAGACAAGCGAGATGG
ACTCCGACCTGCTGTCTGAGTCTCAGTCGGGGCACAAGTCACTGGCCTCGCGCTCGCAGC
ATGGCCGTGGGCGTCATCGTAGCCTGACACAGAAGTTCGCACCAAAGACGTTCAAAGACG
TTGTTGGCCAGAGCTTGGTGGTGCAGGCGCTGTCCAACGCCATCCTGAGGAGGAAGATTG
GGTTGGTGTATGTATTCTATGGTCCGCACGGCACGGGCAAGACTTCGTGCGCCCGTGTCT
TTGCCAAGGCGCTCAATTGCCTCTCCTCTGAGCACCCCAGGCCCTGTGACTCATGCACGT
CGTGCATTGCTCACAATCTCGGCAAGAGCAGGAGCCTGATGGAGATTGGGCCGGTTGGCA
ACATCGACATGGAGGGCATTGTGGACGTCCTCGATAATGTGATGCTTTCACCTGCACCAT
CACACTACAGGGTGTTTATATTTGATGACTGTGATACTCTGCCAGCTGACACTTGGAGTG
CTATCTCAAAAGTTGTGGACCGGGCACCCCGTCGAGTTGTGTTTATCCTTGTCAGTCCAA
ACCTTGAACTTCCTCACATCATCCTGTCGAGATGCCAGAAGTTCTTTTTCCCAAAGCTGA
GGGAGTCCGACATTGTCAATACATTGCAGTGGATTTGCACCAGCGAGAGTCTAGATGTTG
ATAAAGATGCAATGAAGCTAATTGCATCTCGTTCCGATGGATCTTTGAGGGATGCCGAGA
TGACTCTTGATCAACTCAGTTTGCTTGGACAAAGGATTTCCTTGTCTCTTGTCCAAGAAT
TGGTTGGTCTGGTGTCTGATGATAAACTGGTCGATTTGCTTGATTTGGCTCTATCTGCCG
ACATGGTGAACACAGTGAAGACACTACGAGACATCACAGAAACCGGCGTTGAGCCTTTAG
CACTGATGTCTCAGCTTGCCACAATAATTACTGATATTCTTGCTGGTTCGTATGCATTTA
CTCGAGAAAGGCCCAGGAGAAAGTTCTTCAAACGTCCTACCTTGTCAAAGGAAGATATGG
AAAAACTACGTCAGGCCTTGAAAACACTATCTGAAGCTGAAAAGCAGTTGAGGGTTTCTA
GTGACAAGACAACCTGGCTTACAGCTGCTCTGCTTCAGCTTGCTCCTGATAAGCAGTACC
TGCTGCCTAGTTCATCAACTAGTACAAGTTTGAACCATGGTGTGCTGGTTGGTCCCTTTC
CTGATAGGGGTGTAGGGAGGGCCCCAGCAGTTGAGAATAAAGGTAACCTGGCAGGCACGT
CTTATGGGGAAAAGAGAACTGTTGAACACACAGAAAATGGTCATGTGTTGTCAACCAGTT
CTGTCAGAGCAAATGAGGGAACTAAACTCAGAAAAGCGGAAAATGAAATGGTCTGGCAAG
CTGTGCTTGAGAGTATCCAATCAGATACATTGAGAAAAATGATGGCTAAAGAGGCCAGGC
TAAACTCTATCAGCCTTGGAACAGGTAAGGTTCTCAATCTGTCATCCATATCAGTCTTTG
CAACCATCACAATTTTCCAAGAATAAGTTTTCCGTAATTCAGTGCTTAATATTTGGAAAA
AGAGATTCGGTGCTTAAAACAGTGAGGGAAAGCTCATTTTAGAAATATTTTGTATAAACA
GTATAAAAATACTTTTCAACTAATTTTTGCTTGCTTTTGTCTGTGGTATTGGTGTTTCTA
GTAACTCTTGTATTTTTTTCTCAAGTAAGACGCAGTACTCTTGCTTTTATCTCTGCTGTG
AACAAAGTACCAGATATCTATCACTGGGTTGACAGCATTCTTTTGAATGTAGGAACACAA
ACATTACAACTTTACTGCTGAAGTCAAAGTGTATGGAAGAAAGTAGCGATAGTGTTACGA
GCTGTTATGGGCCTTAAGCCCATTAGCTAGGTCATTAGGGTTAGGTTAGCCGTGACACTG
TTCACGCGCTGTTAGCCGTGAACAGTGCCGGCCAGATATGGTTTGTTATGTTGCTTAGCT
ATTAAGTTAGGGTTACCTCTCTATATAAGGAGGGGCAATGTGTTAGTAGGGATAAGCAAG
AAGAATAGATCTGGTTTACTCTTAGGGCCTCCTACGGGAGGGCTGAATACTAGGACTATC
TTGCGAGTGCATCGCAGTTCACAACAATTTGGTACCGGAGCCACTACGCGCGTATCGCCA
CCATGGCCGGTGCACACGATGATCTTGTGACCTACTCCGCCAAGATGGACCTCATCCTTG
AGCAACTCGCCGCCATCAATGCCTGTCTGGATTTCCACGACGCTCGTCTGGCCAAGCTTG
AGCAGGCGTGGGTCGGCCCCACTGCTTCTATCGTGGGCGGCATGGGCGCGGGCAACCTGG
GCGCAAGCGAGGGCGGCCTAAGCGCGGGCGGAGGCGGCCGGATCGAGGACGATGGGGTCG
ATGTGCTGCAACGCGGCGCACCCAGGGAGGAGCTGGAGGCGGCGTTCGGCTTTGTGGAGG
TCCAGGCGTGGCTCGACTATGGCTGTGCGCGGATATGCTCGTCCAATCTGCAACAATCGG
CTGCCATGGTGGCCCAACCCGTAGAGGCGCTGCCGCGGGATAACCCTCCACGCCACAGCT
ACCAATTCTCCGCGTCGTGGCCATCAATCTTCTGCACCACGGACATCCATTTGCTGCGTC
GTTGTAGTTGTGGCCGACGTCATCCACCTTGGCCACCGCCGCGACGTGGTCACCTAAGCT
ACAACACCGGAGGGTGCCACCAACCTTCGCCAGGCGTCCGTCATCGGTCGATCTGGCCGC
CGACGCGTCCTCCTTCGGCAGATCCGGCTACTGACGTGGTTCATTTTTTTTCTAGGTGAA
TAAAATTCTAAGTCGAGATGTGAAAGACTAGTATTGAGTCATTAAGTGCTAGTTTAGTAT
GGGTCAAGTCTTCTTGACTAGAGCTCGCGGACGAGCTGTTTTTAAGGAGGGATGGAATGT
TATGAGTTGTTATGGGCCTTAAGCCTATTAGCTAGGTCATTAGGGTTAGGTTAGCGCGGA
CACTGTCCACGCACGGTTAGCCATGAACAGTGCCGGTCAGATATGGTTTGTTATGTTGCT
TAGCTATTAAGTTAGGGTTACCTCTCTATATAAGGAGGGGCAGGGTGTTAGTAAAGATAA
GCAAGAAGAATAGATCTGGTTTACTATTAGGGCCTCCTACGGGAGGGCTGAGTACCAGGA
CTATCTTGCGAGTGCATAGCAGTTCACAACATGTAGAAGCATGTAGCTGGCTAAGCTCAT
CAAATTATATTTGTGCTATTTTAACTTTTTTTACTGTTGTTGCCTTGCACATATATTCTA
AACTTCAATGCCTCTGATAGTGGTTAATTGGTGTTCTCAAAGTCAATCCGTATAACTTTA
TGTGGTCTTTCACTTAAGTACTTGATGTAAAATGTTGGTAGATTGTCTTTCTAGCAGATC
AATTTCTAACCAGAACCAACAGTGCAACTAATAATTAGCTCACATATCAGTAAGTCCAAA
GCCGAAAACTACAGAGCTCAGATTCTGCAGGCATTTGAGTCCGTTCTTCGTTCTGCTATA
ATACTTGAAATTCGATATGAATCAAAGAATGATGCAAAACCAGGTCATACTCCATCAATG
TTTCCTTACCCTGAGAATGACTCGACACTGAGGAGGTCCTTTACTAAACATAGTCCACTC
TCTTCTGGAGGTGAGATTCTAATTTCGAGGTTTAAAAAGGATAGTGTTGTGAAGGGAGCT
AACTCTAGTAAGACTAGATGGATGCAATCTGATCCCCACATATTAACAGAAGGTGAAATA
ATTGAAGTTGGACCTTCTCGCATGCATTGGCATGCTCAAACAAATAATGATGTTCTTGAC
GTAAATGAAAGAAGAAAGGAGAACACATGGGAGGAAGAAACTTCGTCATCACCAAACCAA
GAGAGCGTGACTAATCCAAAAGGAAGAAATGGGAACAGACAGAATCGACAGAACAGCATA
GTAAGAGGAAAGGTATCTCTTGCTCATGTTATTGGGAGGGCTGAAGCTTGTTCTCAGCGA
GGAGGCTGGTCTAGACGAAAAGCTATATCGATTGCTGAAAAGCTAGAGCAAGAGAATTTG
AGGATGGAGCCTAAATCGAGTCTACTTTGTTGGAGAACCTCAAGGACTCGTCGGAAGCTC
TCTTCAATTAAGGTCAGGAATCGAAGATCACGCACCATATCAAGGCTCATATTGTGTGGA
AGATGCATTTCGACCAAATCTCCAAGATAGAAGAATTTGAATCGTAGAATTTGCAACCTG
TTAACTTAGCATTCATAATTTATTCTGTCTGTACCTTGTAGGCTGTAGCCGTGTCAGTTT
GTAGATCCTTCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTGTATATTTCTTGACATGTA
AAAAACGACGATAGAAGTGACATAGTAAATTCTTCTTT