Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043556_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:203749252:203752529:1 gene:Zm00001d043556 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGGCTGCAATGGTTGGAGCGCGTAGGGCGCTCTTGGCCGCTCGGTTCTCTCCTCGCGGC
ACCATCGCGGCGTCGGCCGCGCCAGCTCCCCTCTACCGGCCCATGGATTCGCCACTCAGG
CTTCCAGCTGAAAGAGTTTGTCTACAGTCTTGGGTTCCACATCGAGGGGCTGGTACCTTT
GCATCTGAAAGGACTGATGAAGATTATCAGCGTGAGTGGGGACAAAACAAAGCAGGTAGC
TACACTGACTCCCGTTGGAACGGCTCTAATCTCCAACTTCAGAGAGATGTCACTTCAGCT
GGTTCCACAACAGGTACTCACAAAAATAAGGGTGTGGATGGTGTTGGTGGCAGTTCTGAG
CAACATTACAGAAGTGGTGGATCATATGGCTTTCAAAACAATCATCAGCCATATACTGGT
ACAAGAGCGAATAATGAGAGATACAATGCATCACAACCTTATAGAGGTAGTGGTCCATAC
AGCCAGCAAGGCCTTGATGGACATTTTTCAAATGATCGTCAACAGTACAATGGCACAGAA
GCTAATAGTACATATAGCTCTGGATACTACACCCAAAGTAAGCAGAAGATTTATGAAGGA
GAGGGAGCTAATAATGGGCAGTATGGATATGGTCCTTCAGGACAACCATGTCCGAACCCA
GTTGGAAATAGCCAGCGAGTTCAGAAACAGCAATATGTTGATCATAGATCTGGGGGAAGT
TATCCAGATAGATCTGGGCATCATCCCTCTCAATATGTAAATCCAACTCATTCCCGTAAG
GAGCATGTTGCAGGGTTTCAGCAAGGCAACAATAGTAATTTTGGATATAATGCTTCGCAG
GCATATCAAAGCCCTTATTTCACTAGGCAGGCTGATACACATAGTACTTCTCAAGGATAT
TCCATGTACCTAAATACAGATGTGCAACGCCTCTCTCATGGAGTTCATCAAGAAAAACAT
TCACATGCACAATCTGCTGGATCATTTGGGAACCATGTAAATAGTGCACCTCATGAATAT
GGCAAATATCATCAGTCACTACAAGGCAACCCTTCAAATGTTGGATCGCCTTACGAAGTA
CCTAGTGAAGCTGGCAGCAAACACAAATGTACTGTTGAAGAACTGGAGAAGTTTTGTGAT
GATGGCAATGTAAAAGAAGCTCTGGAAGTTTTGGCTATGCTAAAGGAAAACAGAATTGTG
CTACATGCTCCTCAGTACTTCAGATTGATGCAAGCATGTGGTGATGCAACTGCCCTTTCA
GAAGCAAGATTAATACATAGTCAAATATCTGAATCATCACTTACTGTTGACACAGATTTT
CAAAACAAAATTATGGAGATGTATGCTAGGTGTGGTTCTATGGAAGATGCAAAGAAGATT
TTCAGTTCTATGGATCATCATAATTTGACTTCTTGGAACACTATGATCTCAGGTTTTGTG
CACAATGTTCTTGGTGAAGAAGCAATAGATTTTTTTGAACGGTTTAAGCAGACAGGGGAC
AAGCCAGATCATGGCATGTTCAGACATGTTTTCTTGGCATGTGGAATTTTGGGATCTGTT
AATGAAGGAATGTTGCATTTTGAATCCATGCAGAAAGATTTTGGCATACATCCCACTACA
GAGCATTATGCAAGCATTGTTACTATGCTTGGACAGTCTGGCTACATTGTCGAGGCTTAT
GAATTCGTGGAACGGATGCCTGTGGAACCAAGCATTGAGGTATGGGAAAATTTGATGAAC
ATGTGTCGACTTAATGGCTTTTTAGAGCTTGGAGATCGTTGTGCTCAGATCATAGAGTGC
TTGGATTCTTCTAGGCTGAATGAACAGTCTAAAATGGGTCTGTTCCCTGTCGATGTGTCA
GATCTTGCAAAGGAAAAGGAAAGGAAAAAGGCAAGTGTCGCCGAAGCTCGGAGCAAGGTC
CATGAATACAGAGCTGGCGACCGATCTCACCCTGACACTCCTAAGATCTATGAAGAGCTG
AGGTATTTGTTGGCTCACATGAAGGAAGCTGGGTATATTGCTGACACTCGATTTGTTCTT
CACGATGTTGATCAAGAAACCAAAGAGGATGCTTTACTGGCTCACAGTGAGAGGCTGGCT
ATCAGTTACGGTCTTATAACAAGTGCTCCCCGCTCACCTATTCGGGTTATAAAGAATCTT
CGATCCTGTGGGGATTGTCACACGGCTTTCAAGATAATCTCAAAACTTGTTGGACGTCAG
ATCATTGCAAGGGATGCAAAGAGGTTCCACCACTTCGAAAATGGTGTGTGTTCTTGCAAA
GACTACTGGTAA

Peptide Sequence

PEP ID

Zm00001d043556_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:203749252:203752529:1 gene:Zm00001d043556 transcript:Zm00001d043556_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MAAMVGARRALLAARFSPRGTIAASAAPAPLYRPMDSPLRLPAERVCLQSWVPHRGAGTF
ASERTDEDYQREWGQNKAGSYTDSRWNGSNLQLQRDVTSAGSTTGTHKNKGVDGVGGSSE
QHYRSGGSYGFQNNHQPYTGTRANNERYNASQPYRGSGPYSQQGLDGHFSNDRQQYNGTE
ANSTYSSGYYTQSKQKIYEGEGANNGQYGYGPSGQPCPNPVGNSQRVQKQQYVDHRSGGS
YPDRSGHHPSQYVNPTHSRKEHVAGFQQGNNSNFGYNASQAYQSPYFTRQADTHSTSQGY
SMYLNTDVQRLSHGVHQEKHSHAQSAGSFGNHVNSAPHEYGKYHQSLQGNPSNVGSPYEV
PSEAGSKHKCTVEELEKFCDDGNVKEALEVLAMLKENRIVLHAPQYFRLMQACGDATALS
EARLIHSQISESSLTVDTDFQNKIMEMYARCGSMEDAKKIFSSMDHHNLTSWNTMISGFV
HNVLGEEAIDFFERFKQTGDKPDHGMFRHVFLACGILGSVNEGMLHFESMQKDFGIHPTT
EHYASIVTMLGQSGYIVEAYEFVERMPVEPSIEVWENLMNMCRLNGFLELGDRCAQIIEC
LDSSRLNEQSKMGLFPVDVSDLAKEKERKKASVAEARSKVHEYRAGDRSHPDTPKIYEEL
RYLLAHMKEAGYIADTRFVLHDVDQETKEDALLAHSERLAISYGLITSAPRSPIRVIKNL
RSCGDCHTAFKIISKLVGRQIIARDAKRFHHFENGVCSCKDYW

Transcript Sequence

Transcript ID

Zm00001d043556_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:203749252:203752529:1 gene:Zm00001d043556 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

GACGGCACCGCAGCAACCCATTCCATAGCCACGCGAGTGACGCGACGCGACGCACGGCCT
GCCTGAGGCAGCGCATCTGCTTGGCGGCCGGGAGCAGCCGCCGCTTCGCCTTCGTGAGGG
TTTAAGCGACGAAGAGAAAGGGGAGGAAGCGAGCCCCCAGGGAGGTGCAGAGGGAGAGGG
TGGGAGATGGCTGCAATGGTTGGAGCGCGTAGGGCGCTCTTGGCCGCTCGGTTCTCTCCT
CGCGGCACCATCGCGGCGTCGGCCGCGCCAGCTCCCCTCTACCGGCCCATGGATTCGCCA
CTCAGGCTTCCAGCTGAAAGAGTTTGTCTACAGTCTTGGGTTCCACATCGAGGGGCTGGT
ACCTTTGCATCTGAAAGGACTGATGAAGATTATCAGCGTGAGTGGGGACAAAACAAAGCA
GGTAGCTACACTGACTCCCGTTGGAACGGCTCTAATCTCCAACTTCAGAGAGATGTCACT
TCAGCTGGTTCCACAACAGGTACTCACAAAAATAAGGGTGTGGATGGTGTTGGTGGCAGT
TCTGAGCAACATTACAGAAGTGGTGGATCATATGGCTTTCAAAACAATCATCAGCCATAT
ACTGGTACAAGAGCGAATAATGAGAGATACAATGCATCACAACCTTATAGAGGTAGTGGT
CCATACAGCCAGCAAGGCCTTGATGGACATTTTTCAAATGATCGTCAACAGTACAATGGC
ACAGAAGCTAATAGTACATATAGCTCTGGATACTACACCCAAAGTAAGCAGAAGATTTAT
GAAGGAGAGGGAGCTAATAATGGGCAGTATGGATATGGTCCTTCAGGACAACCATGTCCG
AACCCAGTTGGAAATAGCCAGCGAGTTCAGAAACAGCAATATGTTGATCATAGATCTGGG
GGAAGTTATCCAGATAGATCTGGGCATCATCCCTCTCAATATGTAAATCCAACTCATTCC
CGTAAGGAGCATGTTGCAGGGTTTCAGCAAGGCAACAATAGTAATTTTGGATATAATGCT
TCGCAGGCATATCAAAGCCCTTATTTCACTAGGCAGGCTGATACACATAGTACTTCTCAA
GGATATTCCATGTACCTAAATACAGATGTGCAACGCCTCTCTCATGGAGTTCATCAAGAA
AAACATTCACATGCACAATCTGCTGGATCATTTGGGAACCATGTAAATAGTGCACCTCAT
GAATATGGCAAATATCATCAGTCACTACAAGGCAACCCTTCAAATGTTGGATCGCCTTAC
GAAGTACCTAGTGAAGCTGGCAGCAAACACAAATGTACTGTTGAAGAACTGGAGAAGTTT
TGTGATGATGGCAATGTAAAAGAAGCTCTGGAAGTTTTGGCTATGCTAAAGGAAAACAGA
ATTGTGCTACATGCTCCTCAGTACTTCAGATTGATGCAAGCATGTGGTGATGCAACTGCC
CTTTCAGAAGCAAGATTAATACATAGTCAAATATCTGAATCATCACTTACTGTTGACACA
GATTTTCAAAACAAAATTATGGAGATGTATGCTAGGTGTGGTTCTATGGAAGATGCAAAG
AAGATTTTCAGTTCTATGGATCATCATAATTTGACTTCTTGGAACACTATGATCTCAGGT
TTTGTGCACAATGTTCTTGGTGAAGAAGCAATAGATTTTTTTGAACGGTTTAAGCAGACA
GGGGACAAGCCAGATCATGGCATGTTCAGACATGTTTTCTTGGCATGTGGAATTTTGGGA
TCTGTTAATGAAGGAATGTTGCATTTTGAATCCATGCAGAAAGATTTTGGCATACATCCC
ACTACAGAGCATTATGCAAGCATTGTTACTATGCTTGGACAGTCTGGCTACATTGTCGAG
GCTTATGAATTCGTGGAACGGATGCCTGTGGAACCAAGCATTGAGGTATGGGAAAATTTG
ATGAACATGTGTCGACTTAATGGCTTTTTAGAGCTTGGAGATCGTTGTGCTCAGATCATA
GAGTGCTTGGATTCTTCTAGGCTGAATGAACAGTCTAAAATGGGTCTGTTCCCTGTCGAT
GTGTCAGATCTTGCAAAGGAAAAGGAAAGGAAAAAGGCAAGTGTCGCCGAAGCTCGGAGC
AAGGTCCATGAATACAGAGCTGGCGACCGATCTCACCCTGACACTCCTAAGATCTATGAA
GAGCTGAGGTATTTGTTGGCTCACATGAAGGAAGCTGGGTATATTGCTGACACTCGATTT
GTTCTTCACGATGTTGATCAAGAAACCAAAGAGGATGCTTTACTGGCTCACAGTGAGAGG
CTGGCTATCAGTTACGGTCTTATAACAAGTGCTCCCCGCTCACCTATTCGGGTTATAAAG
AATCTTCGATCCTGTGGGGATTGTCACACGGCTTTCAAGATAATCTCAAAACTTGTTGGA
CGTCAGATCATTGCAAGGGATGCAAAGAGGTTCCACCACTTCGAAAATGGTGTGTGTTCT
TGCAAAGACTACTGGTAAACAAGATGAAAGAAAGTCCACATCTTGGTCAATTTTTATTGG
CACAAGACCGCTATAGGTTGTTTATGTGCTGAAGGTAGGCTGATGCCTATCTAACATTTA
GTTAGCTAATAGTTTCATGTGAGAGACATGCTGTATGATGTCGTCAGTGAGAAACAGCCA
AACAGGTCCTAAGCAGCTCTGGTGTTCTATTTTGCAGCTCATACGTTAAGCCTGAGCTTT
TACTTTAACAACTGTTGTCTCTGATTTGTTACTTGCCACCAAAATAAAACAGTAGAATGT
AACTGGGTAGTGGTCCCTTGGCATGTAAACTTTGATTCAGCTGATTACAAAGCTTTCTGA
CTGCATTCTGGATCCATTGCTTATATAGCTAGCAGGAGCCTTTTCTTG