Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043529_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:202956954:202962267:1 gene:Zm00001d043529 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

ATGACGCTGTTGTTGGCCCAACAGCTACTTTCCTTCTCCTTCGCCTTTCCACCTCTCCGC
GCCCTCCACCTTGGCAGCCCCCTTAAAGCCTATCCGTCCTCCAAATGCTTCGTCTACTCT
CATTGCCCTTCCCAATTCCAAACCTGGTGGCCTCGAAGTCGCCCAGCCGCCCATCCTGCG
CATAGTTTCTTTGAAGAACAAGAAAGCGAAGGCAGCGACTATGGGGATGAGGCGGTGGGC
TGCTTGGGCGAACCTGCCACACACGGCACCTGGGAGGATACGGATGACGAGGGCAGCTGG
TTGGGCCCGACTCGATGCGGCGCCTCGGAGGATGAAGACGAGGACTGTGGTGAGGAGGTG
GGCCACTGGGACCCGCCTGTCAGCCGCTTTCGACCGCAGCGCGAGGAACCATACCAAGCA
GAAGAGGACGACGATGAAGAATGCGAGTGGTTGGACCCGACCTCCTTTTTGCGATGCCAA
GAAGTGGTAAGCGGTGTTTGCAGCACCACGGCAGCCATGGACGAAATCCTAGCCTTTGCG
AGGTGCTCAGCTGCGGCGGGGGAACAAGGATTCGCCGAGTTCATGGCCGGATACAGCCAC
GGGAACCTCAGCGAGGAGGAGTGCATTGAATTAATGTGGAGGATGTCCAACGAGGGGCTT
GCGTTGGGCTGTGCACACCTGTTCCAGTGGCTGCGGGAGAAGCAGCCGGTGCCAGTATCA
TCAATGGTATGGTTGATGGCTTTTGTTTCGCTTGGGCGTTGTGACATGGCTGATGTGGTC
TTGGAGATTGTGGCAAGGTTACCCTTGGAAAGGGATTTCCGTGAGGTAGTTCTTTATAAT
GCCGCGATATCTGCTGTTGCCTACTGTAGGAGATATGATGGTGCTTGGGAAATTTTTGAG
CTAATGGAGAAGAACAATGTTCAACCTGATCACGGAACATCCGCTATCATGCTTAATATT
ATGAAGAAGAGTAAGGTATCTGCCAAGGATGCATGGGAGTTTTTCAAACGTATGAACAGA
AAAGGAGTCAACTGGAGCTTTGATGTTGGTGCAGCTTTAATCAATATCTTTTGTTCTGAT
GGGCTAAAAAAAGAAGCTCTAATCATCCAGTCAGAAATGGAGAAGAGAGGTATTGCATCA
AACACAAGCATATATGAAACACTGATGAAGGCATACTGTAAATCCAACCAAATTGAAGAA
GCTGAGGGGCTCTTTGTTGAGATGAAAGAAAAAAGTTTGCAAGCAACAACTACAACTTAC
AATATCCTTATGGATGCTTACAGTAGACGATTGCAGACAGAAGTAGTTGAATCCTTACTT
CTCGAGATGCAAGATTTAGGTATAAGACCGAGTGCTAGATCATACAATTGTCTCATAAGC
GCCTATGGGCGCCAGAAGAAAATGAGTGGAAAGGCTGAAAATGCTTTCTTGAGGATGAAG
AGGGATGGTATTAAGCCATTATCTTCTTCATATAATGCACTACTTTTTGCATATGCAGCT
AATGGATTGCATGAAAAAGCTCATGCCATATACATGGATATGAAAAGAGAAGGACTTAAA
CCTACCTTAGAAACATATACAGCTTTACTTGACACTCTTAGGAGAGCAGGTGACACAGAG
AAGCTAATGGAGACATGGAAAACTATGGTTGATGAAAAGTTTGGTGGAACACGAGTCATA
TTCCATATGGTAATTGATTGTTTAGCAAAACATGGGCTGTATCTTCAGGTTAGGGATGTT
ATATATGAGTTTGGAAAGATGGGCTTAAAGCCTACTGTCATGACATATAATATTTTGATG
AATGCTTATGGAAGAGGTGGACAACATTACAAATTGCCCCAACTCCTGAAAGAGATGACA
GCCCTGGAACTCAAACCAGACTCCATTACATATTGTACAATGATATATGCATATGCCCGT
GTCCGTGACTTCTCGAGGGCCTTCTATTACCACAAGCAGATGGTTCGAAATGGGCAAATA
CCTGATCCTAGGTCATATAAAAAGTTGTTGAATACTTTGGATGTGAAGGCTGCAAGAAAG
AATATAAAGGATAAGAGTGCCATACAAGGAATAATTAAGGGCAAGTCTGGCTTAAAACCT
AGGAAGGAAAAGAAAGATGAGTTTTGGAAGAACAGAAAAAAACAGTCTATGCTGAACCAT
GGACACCAGAGAAAAGAATTTTTGTGA

Peptide Sequence

PEP ID

Zm00001d043529_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:202956954:202962267:1 gene:Zm00001d043529 transcript:Zm00001d043529_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

MTLLLAQQLLSFSFAFPPLRALHLGSPLKAYPSSKCFVYSHCPSQFQTWWPRSRPAAHPA
HSFFEEQESEGSDYGDEAVGCLGEPATHGTWEDTDDEGSWLGPTRCGASEDEDEDCGEEV
GHWDPPVSRFRPQREEPYQAEEDDDEECEWLDPTSFLRCQEVVSGVCSTTAAMDEILAFA
RCSAAAGEQGFAEFMAGYSHGNLSEEECIELMWRMSNEGLALGCAHLFQWLREKQPVPVS
SMVWLMAFVSLGRCDMADVVLEIVARLPLERDFREVVLYNAAISAVAYCRRYDGAWEIFE
LMEKNNVQPDHGTSAIMLNIMKKSKVSAKDAWEFFKRMNRKGVNWSFDVGAALINIFCSD
GLKKEALIIQSEMEKRGIASNTSIYETLMKAYCKSNQIEEAEGLFVEMKEKSLQATTTTY
NILMDAYSRRLQTEVVESLLLEMQDLGIRPSARSYNCLISAYGRQKKMSGKAENAFLRMK
RDGIKPLSSSYNALLFAYAANGLHEKAHAIYMDMKREGLKPTLETYTALLDTLRRAGDTE
KLMETWKTMVDEKFGGTRVIFHMVIDCLAKHGLYLQVRDVIYEFGKMGLKPTVMTYNILM
NAYGRGGQHYKLPQLLKEMTALELKPDSITYCTMIYAYARVRDFSRAFYYHKQMVRNGQI
PDPRSYKKLLNTLDVKAARKNIKDKSAIQGIIKGKSGLKPRKEKKDEFWKNRKKQSMLNH
GHQRKEFL

Transcript Sequence

Transcript ID

Zm00001d043529_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:202956954:202962267:1 gene:Zm00001d043529 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

GAGTTTGGGATAGCAAAGGATGGCAAAATAGCCCCAGTCTGTCATTCCCTCTCCACGCCA
CACGCACGGCTCCATCCTTCTATCTGCGCTCGCGCCGCCCGGGAGCTCGCCGTCGTCACC
TCGTCGGGGCGCCCTCGTCCAGTCCGGCTCTCCCTTCGTCGCTCCGCGGCTCTGCCGGCG
TCTGGGGCCCCGGTCTCCGGGCTTTGGTGGCGCCCCCCACCGGCCCACCCCAGCGGGCAG
CGGCAACTGCCACTCTGCGGCTCTGCTAGGGGCAGGGAGGAGCAGTGGCGACTCTGCTAG
GGACAGGGAGGAGCAGTGGCGGGCAGCGTCCTTCCTTTTGTTTGGCCCGGGGCTTCGGAA
TTACCTGGATCCGCCACTGCATCTAAGTCCTCCTCCGCACACTCTCCACCGATCCTCGAC
GCGCGCGTGAGCAACACCACCGTGGTATCGGCGACCACGAGCGGCGCCTTTTGGATTCGC
CCGTGACTTGCTCCCACCGTGTTTGCCACTCGCCAGGATGACGCTGTTGTTGGCCCAACA
GCTACTTTCCTTCTCCTTCGCCTTTCCACCTCTCCGCGCCCTCCACCTTGGCAGCCCCCT
TAAAGCCTATCCGTCCTCCAAATGCTTCGTCTACTCTCATTGCCCTTCCCAATTCCAAAC
CTGGTGGCCTCGAAGTCGCCCAGCCGCCCATCCTGCGCATAGTTTCTTTGAAGAACAAGA
AAGCGAAGGCAGCGACTATGGGGATGAGGCGGTGGGCTGCTTGGGCGAACCTGCCACACA
CGGCACCTGGGAGGATACGGATGACGAGGGCAGCTGGTTGGGCCCGACTCGATGCGGCGC
CTCGGAGGATGAAGACGAGGACTGTGGTGAGGAGGTGGGCCACTGGGACCCGCCTGTCAG
CCGCTTTCGACCGCAGCGCGAGGAACCATACCAAGCAGAAGAGGACGACGATGAAGAATG
CGAGTGGTTGGACCCGACCTCCTTTTTGCGATGCCAAGAAGTGGTAAGCGGTGTTTGCAG
CACCACGGCAGCCATGGACGAAATCCTAGCCTTTGCGAGGTGCTCAGCTGCGGCGGGGGA
ACAAGGATTCGCCGAGTTCATGGCCGGATACAGCCACGGGAACCTCAGCGAGGAGGAGTG
CATTGAATTAATGTGGAGGATGTCCAACGAGGGGCTTGCGTTGGGCTGTGCACACCTGTT
CCAGTGGCTGCGGGAGAAGCAGCCGGTGCCAGTATCATCAATGGTATGGTTGATGGCTTT
TGTTTCGCTTGGGCGTTGTGACATGGCTGATGTGGTCTTGGAGATTGTGGCAAGGTTACC
CTTGGAAAGGGATTTCCGTGAGGTAGTTCTTTATAATGCCGCGATATCTGCTGTTGCCTA
CTGTAGGAGATATGATGGTGCTTGGGAAATTTTTGAGCTAATGGAGAAGAACAATGTTCA
ACCTGATCACGGAACATCCGCTATCATGCTTAATATTATGAAGAAGAGTAAGGTATCTGC
CAAGGATGCATGGGAGTTTTTCAAACGTATGAACAGAAAAGGAGTCAACTGGAGCTTTGA
TGTTGGTGCAGCTTTAATCAATATCTTTTGTTCTGATGGGCTAAAAAAAGAAGCTCTAAT
CATCCAGTCAGAAATGGAGAAGAGAGGTATTGCATCAAACACAAGCATATATGAAACACT
GATGAAGGCATACTGTAAATCCAACCAAATTGAAGAAGCTGAGGGGCTCTTTGTTGAGAT
GAAAGAAAAAAGTTTGCAAGCAACAACTACAACTTACAATATCCTTATGGATGCTTACAG
TAGACGATTGCAGACAGAAGTAGTTGAATCCTTACTTCTCGAGATGCAAGATTTAGGTAT
AAGACCGAGTGCTAGATCATACAATTGTCTCATAAGCGCCTATGGGCGCCAGAAGAAAAT
GAGTGGAAAGGCTGAAAATGCTTTCTTGAGGATGAAGAGGGATGGTATTAAGCCATTATC
TTCTTCATATAATGCACTACTTTTTGCATATGCAGCTAATGGATTGCATGAAAAAGCTCA
TGCCATATACATGGATATGAAAAGAGAAGGACTTAAACCTACCTTAGAAACATATACAGC
TTTACTTGACACTCTTAGGAGAGCAGGTGACACAGAGAAGCTAATGGAGACATGGAAAAC
TATGGTTGATGAAAAGTTTGGTGGAACACGAGTCATATTCCATATGGTAATTGATTGTTT
AGCAAAACATGGGCTGTATCTTCAGGTTAGGGATGTTATATATGAGTTTGGAAAGATGGG
CTTAAAGCCTACTGTCATGACATATAATATTTTGATGAATGCTTATGGAAGAGGTGGACA
ACATTACAAATTGCCCCAACTCCTGAAAGAGATGACAGCCCTGGAACTCAAACCAGACTC
CATTACATATTGTACAATGATATATGCATATGCCCGTGTCCGTGACTTCTCGAGGGCCTT
CTATTACCACAAGCAGATGGTTCGAAATGGGCAAATACCTGATCCTAGGTCATATAAAAA
GTTGTTGAATACTTTGGATGTGAAGGCTGCAAGAAAGAATATAAAGGATAAGAGTGCCAT
ACAAGGAATAATTAAGGGCAAGTCTGGCTTAAAACCTAGGAAGGAAAAGAAAGATGAGTT
TTGGAAGAACAGAAAAAAACAGTCTATGCTGAACCATGGACACCAGAGAAAAGAATTTTT
GTGAAGTTTATCTTATGTGTACATTAAATTGTGTTCAAGATTTACATCCTGTTTCATGGT
CCCCTGGATTTTCACTGTTGAAACGTTCAAGATTGAGACTAAAGGGTTATATACATATGT
TTTAGTTTTCTGTTCTCAGTAGCCTCAATCTACTTTAATGTTTTGCCTTTCAACATGATC
AACTCTAAAAACTCAAATAAATGAACTTCATCTGTTTGTTATTCTTTATTATTTTTTCTC
CTGTGTTCTCTCCCGGCAAGTATGGTTCGACATCCTCAGGATTTTTGGCCTGCAGCACCT
CTCCCCCCAGTGCAACAGTTCCTTTGATGAATGGTGGGAAGGAACAAACAAGGAGATTGC
TGGATCAATGCACAAAAGACTCAATTCCATAATCATTTTGGGAGCTTGGGCCATTTGGAA
ACACCGCAATCGCTGTGTTTTCAGTGGTATTAATCCTAACATAACTGAGGTCTTCTGTCC
GGTCAAGGATGAGATTAACCTTTGGACTTTTGCTGGAGCCCGTTGTGTGTCTAACATCCT
GGCGCTCCAACAGTCCAATGAGCGATTTCCTTTGGGTCCAGTTGGTCAAGGGTCTAGTTT
TTTTTCTATGGAATCTGATCAAGTCTTGTTGGGTCGTGTGGTGTTGTCTGAGGTTTTATT
AGACCCCTTCATACGTATTCAGGTATGGTGTGGTCGTGTATTCAGGTATGGTGTGGTCGT
GTGTAGTTGTATGAGGTTTTCTTTAGACCTTTTTTTATTCTTCTTCTTAATATAATGATG
TGTAGCTCTTCTGTATATTCGAGAAAAAATATTCTTTATCTTTG