Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043519_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:202650470:202656857:1 gene:Zm00001d043519 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M28 family protein
Sequence

ATGTCCCACCTCGACGCGGCCTCGCTCCTCGCCCCCTCGCCGCCGCTGGCAAAGCCCCAC
CCGCGCAGCCGCTTCCTCTGCCTCATCTCCTCCATGCTCGCCGTCCTCGGCGCCTCCCTC
GCGGGTCTCCTCTTATTCGCGCTCCACCCCGCGCCGAACCCGGTCCCGAACTACGCGTCG
CTCTTCCTCTCCCTCGGATCCAACGACACCGCCGCCTCGCACCTCCGAGCGCTCACTCTC
CACCCGCACGTCGCGGGGACCAAGGCGAACGCCCTCACCGCCCGCTACGTGTTCGACGCG
CTCTCCGCGCTCTCCTTCCCCACCCACATCACGCCTTACTCCGTCCTCCTCTCCTACCCC
GTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCCGCGGCGTCGTCACCTCCTTCTCCCTA
AAGCAGGAGACCTACCCCAACGACCCCTACGCAGCAGCCGCGGCGGAGACCATCCCGACG
TTCTACGCGTACTCGGCCTCCGGGTCGGTCTCCGCGGAGGCCGTGTATGCTAACTACGGC
CGCGAGGAGGACTTCTCTTACCTCGCCTCCCGCGGCGTGGACGTCGCGGGCAAGGTCGCG
TTCGCGCGGTACGGGAGGATCCACTGCGAGGACATAGCGCACAACGCGCGCGCCGCCGGC
GCCGCGGCCGCGGTGGTGTACACTGACCCGCTGCAGTACGGCGGCGCACCCGGTGAGGGG
TGGTTCCCCGACTCGCGGTGGCTGCCGCCCAGCGGTGTGCAGGTGGGGAGCCTCTTCCGG
GGCGTGGGGGACCCGACGACGCCGATGTGGGCATCGTCCGAGGGCTGCGAGCGCGTCAGC
TTGGAGGAGGCCATGAATACCGATGACATGCCGCTCATCCCAGCCCTGCCGGTATCGGCT
CAGGACGCGATGGAGATACACAGAGCCATGGGCGGGGCCGTGGCGCCGGAGGACTGGCAG
GGCCGTGAAGACGGACCCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACA
TATCTTGGGAATGATTCGATGGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGCGCC
GAAGAGCCCGATAGGTAA

Peptide Sequence

PEP ID

Zm00001d043519_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:202650470:202656857:1 gene:Zm00001d043519 transcript:Zm00001d043519_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M28 family protein
Sequence

MSHLDAASLLAPSPPLAKPHPRSRFLCLISSMLAVLGASLAGLLLFALHPAPNPVPNYAS
LFLSLGSNDTAASHLRALTLHPHVAGTKANALTARYVFDALSALSFPTHITPYSVLLSYP
VHRSLSLSAPGRGVVTSFSLKQETYPNDPYAAAAAETIPTFYAYSASGSVSAEAVYANYG
REEDFSYLASRGVDVAGKVAFARYGRIHCEDIAHNARAAGAAAAVVYTDPLQYGGAPGEG
WFPDSRWLPPSGVQVGSLFRGVGDPTTPMWASSEGCERVSLEEAMNTDDMPLIPALPVSA
QDAMEIHRAMGGAVAPEDWQGREDGPVYRLGPGPAVLNLTYLGNDSMATIENVFAIIEGA
EEPDR

Transcript Sequence

Transcript ID

Zm00001d043519_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:202650470:202656857:1 gene:Zm00001d043519 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M28 family protein
Sequence

AGAGCACTGACTGAGCACACCACCCACCAGCTCCGAAGTCATGTCCCACCTCGACGCGGC
CTCGCTCCTCGCCCCCTCGCCGCCGCTGGCAAAGCCCCACCCGCGCAGCCGCTTCCTCTG
CCTCATCTCCTCCATGCTCGCCGTCCTCGGCGCCTCCCTCGCGGGTCTCCTCTTATTCGC
GCTCCACCCCGCGCCGAACCCGGTCCCGAACTACGCGTCGCTCTTCCTCTCCCTCGGATC
CAACGACACCGCCGCCTCGCACCTCCGAGCGCTCACTCTCCACCCGCACGTCGCGGGGAC
CAAGGCGAACGCCCTCACCGCCCGCTACGTGTTCGACGCGCTCTCCGCGCTCTCCTTCCC
CACCCACATCACGCCTTACTCCGTCCTCCTCTCCTACCCCGTCCACCGCTCCCTCTCCCT
CTCGGCGCCAGGCCGCGGCGTCGTCACCTCCTTCTCCCTAAAGCAGGAGACCTACCCCAA
CGACCCCTACGCAGCAGCCGCGGCGGAGACCATCCCGACGTTCTACGCGTACTCGGCCTC
CGGGTCGGTCTCCGCGGAGGCCGTGTATGCTAACTACGGCCGCGAGGAGGACTTCTCTTA
CCTCGCCTCCCGCGGCGTGGACGTCGCGGGCAAGGTCGCGTTCGCGCGGTACGGGAGGAT
CCACTGCGAGGACATAGCGCACAACGCGCGCGCCGCCGGCGCCGCGGCCGCGGTGGTGTA
CACTGACCCGCTGCAGTACGGCGGCGCACCCGGTGAGGGGTGGTTCCCCGACTCGCGGTG
GCTGCCGCCCAGCGGTGTGCAGGTGGGGAGCCTCTTCCGGGGCGTGGGGGACCCGACGAC
GCCGATGTGGGCATCGTCCGAGGGCTGCGAGCGCGTCAGCTTGGAGGAGGCCATGAATAC
CGATGACATGCCGCTCATCCCAGCCCTGCCGGTATCGGCTCAGGACGCGATGGAGATACA
CAGAGCCATGGGCGGGGCCGTGGCGCCGGAGGACTGGCAGGGCCGTGAAGACGGACCCGT
TTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTTGGGAATGATTCGAT
GGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGCGCCGAAGAGCCCGATAGGTAACT
AATGGGTGTTTGAATGCACTAAAACTAATAGTTAATGACTAAAGTTAGTTAAAACATCTA
AACATCTTAGCTAATAGTTCAGCTATTAGCTATTTTTGGTAAATTAGTTAATAGTTAGAT
AGTTATTTGTTAGCTAGCTAATTTAACTAATAATTTTTAGTCAACTAACTATTAGTTATA
GTGCATTCAAACGCCCCCTAATTCCTTATTTATCTCGTTATATTGGTAACAAATTCGTTG
TGGAATGTGACGTTGCATTCTTCGGTTTTCACACGAAAGCTTCAGTCACGCGGAGTACTA
CCAGTAGGGAATTAGGAAATTGCATATCTGTGAAGTTCACGCAGCCCGCTCGGGCAGAGC
GCTACTTTTGTAGTGCCATCCGTTGACCTTCTTAGAAGATATATAGATGGCGTGTGAGGA
ACTATTTTCCCTTGCCAAGAAAAAAAGGGAAATTATAGGACCCGGTGTCCACGAATTTTT
CTTCCTATTAGCTGGTGGTAGCCTTGTAGAAGATGCACGTGCTAATGATTTGCGAGAATT
AATAAGGAATTCATGTGGAAGGGAAAATGATGTCATGTCATGTCAAGGTGTGCATGGCGT
GGATGTGTGGTACACTACAAAATTATATAATCATGTAGTACTCCACAACTTTTTAAACAT
GTTAGCTTATCATATAGAGACCACTTTGTAAAAATATTTACTAGAAAGCAAACTTTTCTT
TTCTTTTTGAATTTAATGGCAGGAGCTCTACCTCTCAATTAAAAAGAAAAATAGAATTGA
ATCAATTTTAAGGAAAAATGGACCCAAAAACCTACACAGGGTGCATAAGCAACCGAGACG
ACGATAACCCACACACAAAGCCCATCCAGAATCATCGTTGTCAAGCTCAACACAAAGAAC
GAGCAACTCCGATTCTCCAAGACAGGCAACACAAGACCAAAGGAAACCCTACTACGTCTA
CACCCACAACACCAGCACCAGGTGGAGGAAGACCACGGTGCACCGTCGTTGTCAAGCCTT
GAGATACCTCAAACGAGACAACTCCGATTATTCACCAACGAGACTTCCAAACAAGCATCC
GCCCTGCCAGGGGCATACGCTCAAACCTCCAAAGCAGTCCAATCCACGAAGAAGGGGGAT
TCACCTCACGTCATCGTTGTCGAGCCACATCCTTGGTGTAGCAGCTTCGACTTCACGCTC
TAAGTCTGCATCACCCGCCTACCGGACGCCAAGAACCGAAAGCATCAATCGAGAGGTGAT
GTCATGGCCGAGACAAACTTCAAAAGCGACGACGTGAGAAAGGGAGTGACATCAGAGATG
ACACTGTCGTATGTTTGAGATGGATTAGGCTTTCACAAATGGAAGACAGTGATAGAGAAT
GCGACGCTGAGGCTTTCTCTCAAAAAGCCCCTAGCACAATGTCAGGTAGACCCCGGTCAA
AGCAAGCAACCTCCGTCGTTGCTGACAACTCGCACAAACCCGACATGGACGCGCAGCCGC
AAAGCTAAGGGTGTGTTTGGTTTGACTTTTGGCTTTGGCTTTTGCCCCCTAAAAGCCAAA
AGCCAACCAAAGGGCTGGATCCAGGAAGCAGCTTTTTCTAAAAGCCGACTTTCTCGTAGT
GCAAAACTGAAAGCACCCCTGGACCTGCTTTTAGTGGCTTTTGGATGGAACTGTGAAAAC
ATATATCGAAGAACTTTTAACGACTTTTAGTGGTTTCCACCAAACGATTTTTAGCTTTTT
AACAACACACAGCCTACAGCAGCTTTTTCCACAGCTCACAGCCCACAGCAACTTTTTCCA
CAGTCACAGCCCACAGCAACTTTTTCCACAGCCAAAGCCCAACCAAACAGACCCTAAGTT
GGTCGCCATCCCCTCTAGATGCCTAGATGGACACACGAAATTTGAGCACCAGCAAGCCGT
GTGCAACCCACTGCCACGCGCCGGAGCCACTGCCGGCAGCCATCGACGGCCCTGGCAAAC
GCGGCCACCGAAGCAAGCAGACGCCAGGCGCGAGCGCCACACAACACGCCGCCAGCAGCA
TATGGCGTCGCACCTCCTGTTGGCCAGATCTGACAGCAGCAGCCGCGACACATTGGATCT
GTGGTGCTGGCGCGCGCACCGCAGTAGACACGCCCTCGGCCGCCGTCGAGCCAACCAACC
TCGGAGCACCGCCGCAAGACCAGACAGCCGCCGCCGCCCCAGCCCCTCGCGGCCTCCAAG
CCCCGCACGCCGCTGATCGGCAGCGCCGTCTTCCCCAATGCACCGTCCGCGGCGAGGCGC
GCCGCCGAGAGCGCCGTCCGGCGAACGCACATTGCCAGGGAGGCTGACATGACGCTGCCG
TCGTCGAAGCAGCTCCTCTCCCTCCACGACGCCGCTGCCAACGGCACCGACGCAGGCCAC
GGGGAGGCACCGCGCACCAAGCGGGACCTTGGCGAGCGGACGGACGCGTCCCGCGCGCGC
AGCGATGCCCCCGCGGGGAGACCCAAAGAAGAAGAAAGAACGCCCCGCCGCCGCCATCCT
TGGGGCCCGCGCCGGCGTCTGGCAGACTCCTCCGGCGACGATGAGAGGAGGGGAGGGAGG
GGAGGGGGTGGTGGCGCTAGGGTTTTGGTGGCCACCCGTGTCGCCCGAGAGGAGGACGAC
GCGGGGGCGTTTTTCAATTTCAAGAATTAAAGCAAACTTTTCTTGAACGAACAAAAGCAA
AAAAAAAATAAGATATGTCATTCTTGGTAACCATCGTGATGCTTGGACGTTCGGTGCATC
TGATCCCAACAGTGGAACAGCAGCTATGATTGAGTTAGCTAAAAGGTTTTCAATGCTGCA
AAAACAAGGATGGAGGCCTCGAAGAACTATTATCTTCTGTAGTTGGGACGCGGAAGAATA
CGGACTGACAGGGTCAACTGAATGGGTTGAAGAAAACCGGGAGATGTTGTATTCTAGAGC
TGTTGCTTATCTGAATATTGACGTTTCAGTCGTTGGTCCAGGATTCCTGCCTTCTACAAC
TCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTGGTTCAAGACCCTGATAATTC
ATCTCAGACTGTGTATGATTCATGGATTAAATCGAGCACTCCTCTCCGGGTTCTTAGACT
AGGTGATGGAGGATCAGACTATTCAGCATTCGTCCAACATGTTGGTATTCCTTCGATGAA
TATAATTTTTGGAGAAGGACCAGGATATCCGGTTTACCACTCCTTATATGATGACTACGT
ATGGATGGCGAAATTCGGAGATCCTGCGTTCCGTAGGCATGTGGCAGCTGCTAGCATATG
GGGAATGATGGCTTTGAGGTTGGCAAATGAAGACATCCTACCCTTCAATTACATGTCCTA
TGCAATTGAGCTTGAGGCATACACAAAAACGGTAGAGAATGAAGTGAAGGGAACAACTGT
CACTTGTTCCCCTCTGTACAACTCAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAA
TAACGAACAAAAGGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACT
GAAAATCCGACAACTCAATGACCGTCTTATGCAGACCGAGCGTGCATTCACTAGCAGGGA
AGGCATCTTCAAGCTAGAATGGTTTAAGCATCTGGTGTATGGACCTTCAGACCAGAATGA
CTGGGATACTGCAGTCTATCCAGGTATAGCCAATGCCATAGCCAGCGCCCGGAGCAGCAA
CACTTCGGAGTCCTGGAAGTTTGTACAGCATGAGATCTACAGAGTAGCCAGGGCCGTGAC
ACAAGCATCTGCTATACTGAGTGGCCGTCTGACATGACAGGATTCAAACCATATTCGTTA
AAAAAGATTGTTACTGTGGATTTCGGAAGTTTTGACATTTTTTGAAACTTTCGACT