Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043441_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:3:199980192:199987466:1 gene:Zm00001d043441 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Sequence

ATGGATATCAATGTGCTTGCCTTTTTAGTTCCTGCTGGGATCGTATCATGCTTCTTACCA
TTATCTGATGCAAGCTCATTTTTGGTCCTGTACTTGGTAACCTCAGTGTATTTCTCTGGA
GTAATGGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATTGCT
CTGTCTGAAGCTTTTGGTGTCCTTACAAGATCAATGAAATTTCAGCGTCCAACACTGGAT
GATGGCTCTTTTACAGCCGGGGATGGGAGTTCTGATACTCCTACGAACTCTGAAATGGGT
TTGAAGGAAAAAACATCCAAGAAAAATCGGAAGAAAGACAAAGAGTCAGAGGGAAGTTCA
CCTGTTGATCATAGAACCGAAGAAAAGCTTTTAGTACTGCCTTGTGGGCCATCTGCTGTG
GGCATAATGCTGCTGACCATACTTTCTGGTTTTTACGTGATCCATTGTGTGTGGGCTGCT
GCAGAAGCATATTCAGCACCTTCAATTGTGCTAACATCTCGTTCACATGATGGGTTTCAT
GTTTTTGATGATTTCCGCGAAGCTTATGGATGGCTGCGCCATAACACAGATGCAGATGAC
AAGGTTGCATCTTGGTGGGACTATGGTTATCAGACAACTGCAATGGCAAACAGAACTGTT
ATTGTGGACAATAATACATGGAATAACACGCACATTGCAACAGTTGGGACTGCAATGGCA
TCTCCAGAAAAAGTAGCATGGGAGATCTTCAATTCTTTAGATGTCAAATATGTGCTTGTT
ATCTTTGGAGGGCTTATTGGCTACCCAAGTGATGATATTAATAAGTTCCTCTGGATGGTT
CGAATCGGAGGTGGTGTATTCCCTCAAATAAAGGAAGCAGATTACCTTAAGGATGGCAAC
TACCGTGTTGATGCTCATAGTACCCCAACCATGTTGAATTCCCTCATGTACAAGCTTTGC
TATTACAGATTCGTCGAAACTGATGGTAAGGGCTTTGATAGAGTGAGAAGATATGAAATA
GGGAAGAAACATTTTAAACTTACGCATTTTGAGGAGGTTTTCACAACTCACCATTGGCTG
GTTCGGATTTACAAACTGAAACCTCAGAAGAACAGAGTCAGAGGGAAACTGAAATTTAAA
TCTAGTTTAAAAGCAAGTTTTATGCGTAAAACTGGTGGAAAGAAGAGCCCATGGAAATAG

Peptide Sequence

PEP ID

Zm00001d043441_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:3:199980192:199987466:1 gene:Zm00001d043441 transcript:Zm00001d043441_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Sequence

MDINVLAFLVPAGIVSCFLPLSDASSFLVLYLVTSVYFSGVMVRLMLVLAPAACILSGIA
LSEAFGVLTRSMKFQRPTLDDGSFTAGDGSSDTPTNSEMGLKEKTSKKNRKKDKESEGSS
PVDHRTEEKLLVLPCGPSAVGIMLLTILSGFYVIHCVWAAAEAYSAPSIVLTSRSHDGFH
VFDDFREAYGWLRHNTDADDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMA
SPEKVAWEIFNSLDVKYVLVIFGGLIGYPSDDINKFLWMVRIGGGVFPQIKEADYLKDGN
YRVDAHSTPTMLNSLMYKLCYYRFVETDGKGFDRVRRYEIGKKHFKLTHFEEVFTTHHWL
VRIYKLKPQKNRVRGKLKFKSSLKASFMRKTGGKKSPWK

Transcript Sequence

Transcript ID

Zm00001d043441_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:199980192:199987466:1 gene:Zm00001d043441 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Sequence

GCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGGTTGTTGAATTCCC
TTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATTCACTGCTCCAGTTTTCTCAGTCA
ATGCGTCCTGGGCAACTTACCTATTAACCAAGGAAACAAAGGGCCCCGGTGCTGGTTTGA
TGGCAGCAACTATTCTAGCAATGGTAATTGTTATATTGACTATGTATTTTGTCTGAAAAA
TACTAGATCCTTGATATGTTTGCTTGATCTACATTTTTTCTGCTCTTCTATTCTTTTTGG
GGTGTATCAAGAATGAAGCAATTAGATAAGGATATGTTAGCTTTGTCAATATTGTCTGTC
TTTGAGTGTAGCAGGGAAAGTCTTGGCATGTCATTGTTTTAGTTATTATGATCTGAACAA
CCTATTTTCATTGCAAGTCTTTGTTTGCCTATGCTCTCCTTGAACAGTTCTGTGTTCACA
GTGGTATGTTTGTTTTTTGGTTAAATTTGGAACACTAAAGAAAAGGAAGTACAGCTATTA
TCGAATCACTTCTGAGCTTCTATGTTTGAAACATTTGAAGGAGCTGCTTTGGCCTTTGAT
TTTTCTCATTCATCTAAAATAGTCTCGCCTATCGTTGACAAGTAGACATATTCCCCGCAT
GTAAAAGGCTCACTGATGGGGACGAGGTTCCCGATCTTTCATGAGGTTCAAGGTAACTCT
TGTTTTGGTGGAATGCGACATACCGATCTGACTCTAGATCAAAAGACCCAACCCTACAAT
CTTAGCACAATTACTCCTCTGGTTATCAACCATGTCACTGATCCGGTTGACCTCATTAAG
AAGGCTAATCTCTGGCTGCGAAACGAAGAACATAAGCAAGAACTTTAAAGTACTCAAAGT
TGGGGTTTCACAAATCACGACTAATAACAACGACTGTTCAATGACAAATTGATCTAAAGC
AAGACCCGAGCCTAACATGGACATCGACTACTGATTATATGGTGTAAGGGTCGTCACACC
TCTTGGACAGGCCCCATAACAGGCTCTTAGATGATAAGTGGCCCAACTGACCAAAAGACG
TGACATAGCATTGTAACAGTTTCTAGACGTTGCTTGTTTCTATGATTTCCGTTAACTCCG
GTGGAATTTAAACCTCAAACCAAAGACATTAGGTAGCTTATAGCTTTCTATCCATGGATC
GTCAAAAACCAAGTCCGTATGCGTCCTGAGTATCCGTTTTACTGCATGCTGGTCCTGAAG
GCCGATGCGAGTTAGCCTAGGCCTCCGGCTGGTCTTGGACGTCCTCACTGGTCTTTCCCA
CCTCTACACCTTTTCCGATGTACTTCATGACCCTCTTCAATATTACTAAACAAGATAACA
TCATCAGATAGCAATCTATTCTCAAAACTATAAAAAATATCGCTTAAGAATGAGCTCACC
TCTAAATTTTATTGTCGTATTTGAGCTTGGGACATTGGACCTTGCGTACTGGTTGGACCG
TTGGAGGGTCAATGTCCTCATCACTTACTGCTCTGCTAACCGGAAAAAACCAAAATGGTG
AGCTGAGAGCCTGAGACCATGAAGGAAAGCTAACTTCTGAACTGGTGAACAATGAAAATT
TCTTACCACTGACAATCATGTTACGAATTGGGTTTGTATGTGCGAGATATTGGTTTCCCT
GTCATTTAATTATGATGTTTAACACCAGCCTTTTCCGTATGAATGTAAAAAAGCAAGGCC
TTCTAATAGGTTTTCACCCGTTTTAGATGTTTTGCAGTATATGCTTGATCCTATCTTGTA
AGCGTCACTTAAGAAAGAACCTACTTATTACTCCCTGCCAATATGCAGGTCCCATCATAC
ATCTCAAGATCTGTTGCTGGCAGCTACGATAATGAAGCTGTAGCTATATTTGCTTTAATA
TTCACATTTTATCTATATGTAAAGGTGATTGATCTCAAAATTTTCCCTCATGTTCCTCCT
CTCCCGCTCTGAAATATCTCTTTGCTACTTTAAACATGTATGAAATAATTTTGCAGACAC
TAAACACTGGATCACTCTTTTATGCGGCACTTAATTCTCTCTCGTACTTCTACATGGTAT
TTTTGTTTCCATTTTTTTATATTTGTAGTAACTGCCATAGACCATGTATCCAAGATATGT
TACTGTATCCCCTTTCAGGTTTGTTCTTGGGGAGGCTACACATTCATCATCAATCTTATC
CCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTGCT
TATGCTCCCCTTGTAAGTCCGTGGGTTTAGTGTCATACCAACTCTTTTGTACAAGTGAAT
ACTGAATAGAAAAAATTTCATACCGGTAAACACAATGCAGGTTGTGCTTGGAACACTTCT
GGCAGCATCGGTACCTGTTGTTGGTTTTAATGCAGTAATGACGTCAGAGCACTTTGCATC
ATTTCTGGTATATTGATTGTGTATCTACTAGGGATGCGAGTTGCACTTCTTTTGAGTCAT
GGGGTCAACCCAAGACTTGCTAAAATGAATAAGAATGACATTACACATAATTATTTAGGG
AGAGAAATGAACTAAATTAGCTGACCTAGAAAGCACCATTTGGTACCCATTTGCATCCCT
GATCTACCTACGTGTTACCCTTTACTTCCTAGCTTCTCCCATTTCAGTAAAACCTTGGCT
GCAAACTAATTCATCTCCCCCCTATCCTCTCTATTATTTCAAAAACAGGTGTTTATAATC
CTCCATGTGGTTGCTCTTGTTTATTACATCAAAGGACTTTTAACTCCCCGACTGTTCAAA
GTGGCCATGACATTTGTTATAACCGTTGGATTGTAAGTTTTTGATTTTGGAAGGTGGAAC
TAGTGGAAATGCATAATAAATGTTGTATCTATGAGCAAAGAAAGATGTGTTCCATAGGAG
TCAAAATGAAGCAGTTGGTCATATTTAGGTCGCTGAACTGCTAGCTATCCACTTGACACA
TCTAACAGTAAAAATCCTGCAGGGCTGTTTGTTTTGCTGCTGCAGCAATACTCATTGCAT
TGATTGCATCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCCAA
CCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCT
GGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTTTTAGTTCCTGCTGGGATCGTAT
CATGCTTCTTACCATTATCTGATGCAAGCTCATTTTTGGTCCTGTACTTGGTAACCTCAG
TGTATTTCTCTGGAGTAATGGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTT
TGTCTGGGATTGCTCTGTCTGAAGCTTTTGGTGTCCTTACAAGATCAATGAAATTTCAGC
GTCCAACACTGGATGATGGCTCTTTTACAGCCGGGGATGGGAGTTCTGATACTCCTACGA
ACTCTGAAATGGGTTTGAAGGAAAAAACATCCAAGAAAAATCGGAAGAAAGACAAAGAGT
CAGAGGGAAGTTCACCTGTTGATCATAGAACCGAAGAAAAGCTTTTAGTACTGCCTTGTG
GGCCATCTGCTGTGGGCATAATGCTGCTGACCATACTTTCTGGTTTTTACGTGATCCATT
GTGTGTGGGCTGCTGCAGAAGCATATTCAGCACCTTCAATTGTGCTAACATCTCGTTCAC
ATGATGGGTTTCATGTTTTTGATGATTTCCGCGAAGCTTATGGATGGCTGCGCCATAACA
CAGATGCAGATGACAAGGTTGCATCTTGGTGGGACTATGGTTATCAGACAACTGCAATGG
CAAACAGAACTGTTATTGTGGACAATAATACATGGAATAACACGCACATTGCAACAGTTG
GGACTGCAATGGCATCTCCAGAAAAAGTAGCATGGGAGATCTTCAATTCTTTAGATGTCA
AATATGTGCTTGTTATCTTTGGAGGGCTTATTGGCTACCCAAGTGATGATATTAATAAGT
TCCTCTGGATGGTTCGAATCGGAGGTGGTGTATTCCCTCAAATAAAGGAAGCAGATTACC
TTAAGGATGGCAACTACCGTGTTGATGCTCATAGTACCCCAACCATGTTGAATTCCCTCA
TGTACAAGCTTTGCTATTACAGATTCGTCGAAACTGATGGTAAGGGCTTTGATAGAGTGA
GAAGATATGAAATAGGGAAGAAACATTTTAAACTTACGCATTTTGAGGAGGTTTTCACAA
CTCACCATTGGCTGGTTCGGATTTACAAACTGAAACCTCAGAAGAACAGAGTCAGAGGGA
AACTGAAATTTAAATCTAGTTTAAAAGCAAGTTTTATGCGTAAAACTGGTGGAAAGAAGA
GCCCATGGAAATAGAGACTACAAAGGCAGGGTGCTGGAGTCACTAGTCAGCACAGTTACT
ATCCTGAGAAAACCATGAATTCATCAAAAGGAGTTAGATTAAAAGCATAGCATTGGTGTG
TTCTTTGTTATTGTCATGGAGCAGATTATAGGGGTGCTTCATGTTTTTTTTGGCATTTGA
TCTCCTTAATGGCATTATAGGGGTCTGATGAAATTTGTGGTAGGTTCTCGAGTGAGGTTT
TATCCCCATTTTAAACAAAATGGACTTTGTTTATAGGAACCTGACTGAGCGCCTGGCCGT
TTGGAAACATCTTTAAAGGTTGTTTGGTTTGAAGAAATGGTGGCCTATCTTTTCTTTTAG
GCTACCTTT