Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043405_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:3:198921410:198923688:1 gene:Zm00001d043405 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGTTTTGCTTGAGGAACTACTGGTCGCCTGCATTTGCTTCAGTAAAGGAGGGGCCTGTT
CGACATCATATAAAGTTTAATTGTGTAGTGGTTTGTGGTGCCAGGGGTCCAAGACCGAGA
TATCCCCGTGTATGGAAAACTCGTAAGAAAATTGGGACTATTTCCAAGTCACAGAAGCTT
GTTGAATGTATTAAAGGTCTGTCTAATGTAAAGGAGGAAGTTTATGGAGCGCTTGACTCT
TTTGTTGCATGGGAACTGGAGTTTCCCTTGATAGTAGTAAAGAAGGCACTGAAGAAACTT
GAAGACGAAAAGGAATGGAAACGAATAATTCAGGTCATTAAATGGATGTTCAACAAAGGT
CAGGGGAAGACAATGGGGAGCTATTACACCTTGTTGAATGCTTTGATCGAGGACGGACGG
ATTGAGGAAGCAGAAGAGTTATTTAGAATGGTATTCTCACGATATATGGAGGGTTTGCCT
CGTACATTTTTCATGAGAATTATTTCTTTCTATTACAGTGCTGGAGAGCATGATAAGATG
TTCGAGATTTTTGCTGATATGGAGGAACTAGGCGTAAGACCAGATGGTTCTATTATCAGG
ATGCTAGGTGATGTATTTCAAAAGATAGAGATGATGGACAAATACGAAAAGTTAAAAAAG
AAATACCCACCACCGAAATGGGAATATCGATACATCAAAGGCAAGCGCATTAGAATTAGA
GTTTACCCTGATAGTAAAACTGAAGAGACGGCAAAAGGAGACCATGACAATGATGAACTC
GGAGAGGTAGAAAGTATACAGCTTGATAATGAATTGGAAGAAGAAGCAAGCTCAGGCCTC
GACAGGAGTGTATTGGACGATGCAACTTGTGGAGACCTTGAATATATATAA

Peptide Sequence

PEP ID

Zm00001d043405_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:3:198921410:198923688:1 gene:Zm00001d043405 transcript:Zm00001d043405_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MFCLRNYWSPAFASVKEGPVRHHIKFNCVVVCGARGPRPRYPRVWKTRKKIGTISKSQKL
VECIKGLSNVKEEVYGALDSFVAWELEFPLIVVKKALKKLEDEKEWKRIIQVIKWMFNKG
QGKTMGSYYTLLNALIEDGRIEEAEELFRMVFSRYMEGLPRTFFMRIISFYYSAGEHDKM
FEIFADMEELGVRPDGSIIRMLGDVFQKIEMMDKYEKLKKKYPPPKWEYRYIKGKRIRIR
VYPDSKTEETAKGDHDNDELGEVESIQLDNELEEEASSGLDRSVLDDATCGDLEYI

Transcript Sequence

Transcript ID

Zm00001d043405_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:198921410:198923688:1 gene:Zm00001d043405 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

TTACTCCACTCGGCGGCGGCCCATCCTTTCATGTTTTCTCCTCCAGTCCTACAAATACAG
GACACAACACGCTTGCTCTTGTGATACTCTATTAAGGTACGGCCTGAAGATGAGAGTCCT
CTTCATCTGGTGAGAACGAAGCTCTTTTTCGCTAATATATATTAAAGAATGTTTTGCTTG
AGGAACTACTGGTCGCCTGCATTTGCTTCAGTAAAGGAGGGGCCTGTTCGACATCATATA
AAGTTTAATTGTGTAGTGGTTTGTGGTGCCAGGGGTCCAAGACCGAGATATCCCCGTGTA
TGGAAAACTCGTAAGAAAATTGGGACTATTTCCAAGTCACAGAAGCTTGTTGAATGTATT
AAAGGTCTGTCTAATGTAAAGGAGGAAGTTTATGGAGCGCTTGACTCTTTTGTTGCATGG
GAACTGGAGTTTCCCTTGATAGTAGTAAAGAAGGCACTGAAGAAACTTGAAGACGAAAAG
GAATGGAAACGAATAATTCAGGTCATTAAATGGATGTTCAACAAAGGTCAGGGGAAGACA
ATGGGGAGCTATTACACCTTGTTGAATGCTTTGATCGAGGACGGACGGATTGAGGAAGCA
GAAGAGTTATTTAGAATGGTATTCTCACGATATATGGAGGGTTTGCCTCGTACATTTTTC
ATGAGAATTATTTCTTTCTATTACAGTGCTGGAGAGCATGATAAGATGTTCGAGATTTTT
GCTGATATGGAGGAACTAGGCGTAAGACCAGATGGTTCTATTATCAGGATGCTAGGTGAT
GTATTTCAAAAGATAGAGATGATGGACAAATACGAAAAGTTAAAAAAGAAATACCCACCA
CCGAAATGGGAATATCGATACATCAAAGGCAAGCGCATTAGAATTAGAGTTTACCCTGAT
AGTAAAACTGAAGAGACGGCAAAAGGAGACCATGACAATGATGAACTCGGAGAGGTAGAA
AGTATACAGCTTGATAATGAATTGGAAGAAGAAGCAAGCTCAGGCCTCGACAGGAGTGTA
TTGGACGATGCAACTTGTGGAGACCTTGAATATATATAATTCAGAGCTTCCATTTGGTTT
TTTTTAATGCCTGCTTAATCAAAGCGGCCTGGAGCAAATTGAACCGGTAACATCCTAGAA
CCCATGCCGTTGTACTTCTAAAACACGGGCATCGATATCTTCAGATCTATTTTACTTGGA
TT