Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043401_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:198863965:198877772:1 gene:Zm00001d043401 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidate cytidylyltransferase

Sequence

ATGCAAAGGGACACAAGCTCTAGCGATGTTTCTGCTTCTCATGTAGGACGTGTAAGACGT
CGCAAACATCCAACTGAGGCTACCACAGATGGGAATAGAGCTAATGGACAGCCATTGCTT
GTCAATGATCAGAACAAATATAAATCAATGCTTACCCGTACGTATTCTACAGTATGGATG
ATTGGAGGCTTTGCCTTTATTATTTATATGGGTCATCTATATATCTGGGCTATGGTGGTT
GTGATTCAAATATACATGGCAAGAGAACTTTTCAATTTACTCAGAAAATCCAGTGAAGAG
AAACAACTGCCAGGGTTCAGGGTCCTGAATTGGCACTTCTTTTTCACGGCAATGCTGTAC
ACTTATGGGCGCTTTCTTAGTCGTCAGCTGGTGAATACAGTGACTTCAGATCACTTGCTT
TATAAGGTCGTCAGTGGCCTAATTAAGTATCAGATGTTTATCTGCTATTTCCTTTATATT
GCAGGGTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATACAAGTATCAGTTCAAA
CAGTATGCCTGGACACACATGATACTTTTAACAGTTTTTGCACAGTCTGCTTTCACTGTG
GCAAACATATTTGAAGGGATATTCTGGTTTCTTTTGCCTGCTTCACTTATTGTGATCAAC
GATATTTTTGCTTATTTATTTGGGTTCTTTCTTGGGAGAACACCATTAATCAAGTTGTCT
CCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCAGTGACAACTATCATCTCTGCGTTT
CTGTTAGCAAATGTAATGGGCCATTCGCAATGGTTGACATGCCCAAGAAAGGATCTGTTG
ACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGA
GAGTGGGTGCCGCATTGGTTCCCATGGAAAGAACTAGCTATTATGCCTGTGCAGTGGCAT
GCTTTAGCCCTAGGTTTATTTGCATCAATAATAGCACCATTTGGAGGATTTTTTGCGAGT
GGCTTCAAGAGGGCTTTTAAAATTAAGGATTTTGGTGACAGCATACCTGGGCATGGTGGA
ATTACTGACAGAATGGATTGTCAAATGGTTATGGCAGTGTTTGCATACATATACCACCAA
TCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGATTATAAGAAAC
CTAACCTATGAGGAGCAAAAATATGTATATGAACAACTTGGGGAAATGTTCCGTGAGAGG
CAATTGGCTCATTGGCTGAAAGCTGAGAGTTAG

Peptide Sequence

PEP ID

Zm00001d043401_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:198863965:198877772:1 gene:Zm00001d043401 transcript:Zm00001d043401_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidate cytidylyltransferase

Sequence

MQRDTSSSDVSASHVGRVRRRKHPTEATTDGNRANGQPLLVNDQNKYKSMLTRTYSTVWM
IGGFAFIIYMGHLYIWAMVVVIQIYMARELFNLLRKSSEEKQLPGFRVLNWHFFFTAMLY
TYGRFLSRQLVNTVTSDHLLYKVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFK
QYAWTHMILLTVFAQSAFTVANIFEGIFWFLLPASLIVINDIFAYLFGFFLGRTPLIKLS
PKKTWEGFIGASVTTIISAFLLANVMGHSQWLTCPRKDLLTGWLYCDPGPMFKPEHYSLG
EWVPHWFPWKELAIMPVQWHALALGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGG
ITDRMDCQMVMAVFAYIYHQSFIAPQNFSVEIILDQIIRNLTYEEQKYVYEQLGEMFRER
QLAHWLKAES

Transcript Sequence

Transcript ID

Zm00001d043401_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:198863965:198877772:1 gene:Zm00001d043401 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidate cytidylyltransferase

Sequence

ATTGACTGTTGCCTTTTATTTTCTTTTTAGTAACTTTTTGAGTACCAGTGATGCAAAGGG
ACACAAGCTCTAGCGATGTTTCTGCTTCTCATGTAGGACGTGTAAGACGTCGCAAACATC
CAACTGAGGCTACCACAGATGGGAATAGAGCTAATGGACAGCCATTGCTTGTCAATGATC
AGAACAAATATAAATCAATGCTTACCCGTACGTATTCTACAGTATGGATGATTGGAGGCT
TTGCCTTTATTATTTATATGGGTCATCTATATATCTGGGCTATGGTGGTTGTGATTCAAA
TATACATGGCAAGAGAACTTTTCAATTTACTCAGAAAATCCAGTGAAGAGAAACAACTGC
CAGGGTTCAGGGTCCTGAATTGGCACTTCTTTTTCACGGCAATGCTGTACACTTATGGGC
GCTTTCTTAGTCGTCAGCTGGTGAATACAGTGACTTCAGATCACTTGCTTTATAAGGTCG
TCAGTGGCCTAATTAAGTATCAGATGTTTATCTGCTATTTCCTTTATATTGCAGGGTTTG
TATGGTTTATTTTGACTCTCAAGAAAAAGACATACAAGTATCAGTTCAAACAGTATGCCT
GGACACACATGATACTTTTAACAGTTTTTGCACAGTCTGCTTTCACTGTGGCAAACATAT
TTGAAGGGATATTCTGGTTTCTTTTGCCTGCTTCACTTATTGTGATCAACGATATTTTTG
CTTATTTATTTGGGTTCTTTCTTGGGAGAACACCATTAATCAAGTTGTCTCCAAAGAAAA
CTTGGGAAGGTTTTATTGGTGCATCAGTGACAACTATCATCTCTGCGTTTCTGTTAGCAA
ATGTAATGGGCCATTCGCAATGGTTGACATGCCCAAGAAAGGATCTGTTGACTGGGTGGC
TTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGC
CGCATTGGTTCCCATGGAAAGAACTAGCTATTATGCCTGTGCAGTGGCATGCTTTAGCCC
TAGGTTTATTTGCATCAATAATAGCACCATTTGGAGGATTTTTTGCGAGTGGCTTCAAGA
GGGCTTTTAAAATTAAGGATTTTGGTGACAGCATACCTGGGCATGGTGGAATTACTGACA
GAATGGATTGTCAAATGGTTATGGCAGTGTTTGCATACATATACCACCAATCATTCATTG
CACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGATTATAAGAAACCTAACCTATG
AGGAGCAAAAATATGTATATGAACAACTTGGGGAAATGTTCCGTGAGAGGCAATTGGCTC
ATTGGCTGAAAGCTGAGAGTTAGCGTGCTTATGAAATGCATGATATGTTGTGCATTTAGT
TCATGTATGGCAGCATGCCAGCATGTTATGAATGTATACGGAGCCCTTGCCCAAACCATT
GTATAGAATGGTAGAATGGAGAGAATGAATGGGTTGTAGGTGCTTTATTCACTCTCTAGT
CTCCACTGACGCTGCCTATAATTCACTCCCCCTGTCATCGTTTCTGCAGTCTGTGTAAAA
GGGAACCTGGAAAGTTTTATTCTTTCCACTTCGTGGTGCTGGGCTCAGATCAAATATTCG
AGGATTCACAATATATCCCCGATGTTTTACCA