Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043393_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:198633149:198637378:-1 gene:Zm00001d043393 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

ATGACGGCGCTGCAGTTCCTGTTGCTCGCGCTCGTCGCCGTCACTCAGGTCGCGAGCGCC
ACCACGGTCACCTACAACGACCGTGCACTCGTCATCGATGGTCAGCGCCGTATTATTCTA
TCAGGGTCTATTCATTACCCCAGGAGCACGCCACAGATGTGGCCTGATCTCATCAACAAA
GCTAAAGAAGGCGGCCTCAACACCATCGAAACATACGTCTTCTGGAATGGCCACGAGCCA
CGCCGCCGTCAGTATAATTTCGAGGGAAGCTACGACATCATCAGGTTCTTCAAGGAGATC
CAGAACGCTGGAATGCATGCTATTCTTCGCATTGGTCCCTACATCTGTGGGGAATGGAAT
TACGGGGGCCTTCCTGCATGGCTGCGCGACATTCCTGGAATGCAGTTCAGGTTGCACAAT
GCCCCCTTTGAGCGCGAGATGGAGACCTTCACCACCCTCATCGTCAATAAGATGAAGGAC
GTCAACATGTTCGCAGGACAGGGAGGCCCAATCATCCTTGCTCAGATCGAGAACGAGTAT
GGAAACATCATGGGACAACTCAAGAACAACCAGTCTGCCTCGCAATACATCCACTGGTGC
GCGGACATGGCGAATAAGCAAGAGGTCGGTGTCCCGTGGATCATGTGCCAGCAGGATAAC
GATGTGCCACACAACGTCATCAACACCTGCAATGGTTTCTATTGCCACGATTGGTTCCCG
AATAGGACCGGCATTCCCAAGATATGGACAGAAAACTGGACTGGCTGGTTCAAAGCCTGG
GATAAGCCGGATTTCCATAGATCCGCTGAGGACATTGCTTTCGCGGTTGCCATGTTCTTC
CAGAAGCGTGGATCGGTCCATAACTACTACATGTACCATGGAGGAACCAATTTCGGACGC
ACTTCTGGTGGCCCGTACATCACAACCAGCTATGATTACGATGCACCTTTGGATGAGTAT
GGTAACATTAGGCAGCCCAAATACGGGCACCTGAAAGATCTCCACGACCTGATCAGGTCC
ATGGAGAAAATCCTTGTCCATGGGAAGTACAATGACACAAGTTATGGCAAGAATGTCACT
GTAACCAAGTACATGTATGGTGGTTCTTCAGTTTGCTTCATCAACAACCAGTTCGTCGAC
AGGGATATGAAGGTGACCCTCGGCGGCGAAACTCACCTCGTTCCGGCATGGTCCGTCAGC
ATCTTGCCCAACTGCAAGACTGTTGCCTACAACACTGCAAAGATCAAGACGCAAACATCG
GTAATGGTGAAGAAGGCCAACTCGGTGGAGAAGGAACCGGAGACCATGCGATGGTCGTGG
ATGCCCGAGAACCTCAAGCCCTTCATGACAGACCACCGTGGCAGCTTCAGACAGTCACAA
CTCTTGGAGCAGATCGCAACATCCACTGATCAGAGCGACTACTTGTGGTATAGGACAAGC
CTTGAGCATAAGGGAGAGGGAAGTTACACGCTGTACGTGAACACAAGTGGCCATGAGATG
TACGCTTTTGTAAACGGAAGGCTTGTTGGGCAAAACCACTCGGCCGATGGAGCGTTCGTC
TTCCAGCTCCAGTCTCCGGTGAAGCTCCACTCCGGAAAGAACTACGTTTCTCTCCTCAGC
GGCACAGTCGGACTCAAGAACTATGGACCTTCGTTTGAGCTTGTGCCAGCGGGCATCGCC
GGTGGGCCGGTTAAGCTTGTCGGGACAAACGGCACCGCCATTGATCTTACCAAAAGCTCT
TGGTCTTACAAGTCTGGGTTGGCCGGTGAGCTCAGGCAAATCCACCTCGACAAGCCCGGC
TACAAGTGGCAGAGCCACAACGGTACCATCCCCGTCAACCGGCCCTTCACGTGGTACAAG
ACCACCTTTGAAGCTCCCGCCGGCGAGGAGGCCGTCGTGGTGGACCTGCTGGGCCTGAAC
AAGGGCGTGGCGTGGGTGAACGGCAACAGCCTTGGACGCTACTGGCCGTCCTACACCGCG
GCGGAGATGCCCGGTTGCCACGTCTGCGACTACCGGGGAAAGTTCATAGCGGAGGGCGAT
GGCATCCGCTGCCTCACGGGTTGCGGCGAGCCAGCGCAGCGCTTCTACCACGTGCCGCGC
TCCTTCCTCCGCGCCGGCGAGCCCAACACGCTCATCCTCTTCGAGGAGGCCGGCGGCGAC
CCGACACGCGCCGCGTTCCACACCGTCGCCGTGGGCCCCGTGTGCGTGGCGGCCGTCGAG
CTCGGCGACGACGTCACGCTGTCATGCGGCGGCCACGGCCGCGTCGTCGCCAGCGTCGAC
GTGGCCAGCTTCGGCGTCGCCAGGGGCAGCTGCGGCGCCTACAAGGGAGGCTGCGAGTCC
AAGGCCGCGCTCAAGGCGTTCACGGACGCGTGCGTCGGCAGGGAGTCGTGCACGGTCAAG
TACACGGCCGCGTTTGCCGGCGCAGGGTGCCAATCCGGCGCGCTCACCGTTCAGGCCACC
TGCTCATAG

Peptide Sequence

PEP ID

Zm00001d043393_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:198633149:198637378:-1 gene:Zm00001d043393 transcript:Zm00001d043393_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

MTALQFLLLALVAVTQVASATTVTYNDRALVIDGQRRIILSGSIHYPRSTPQMWPDLINK
AKEGGLNTIETYVFWNGHEPRRRQYNFEGSYDIIRFFKEIQNAGMHAILRIGPYICGEWN
YGGLPAWLRDIPGMQFRLHNAPFEREMETFTTLIVNKMKDVNMFAGQGGPIILAQIENEY
GNIMGQLKNNQSASQYIHWCADMANKQEVGVPWIMCQQDNDVPHNVINTCNGFYCHDWFP
NRTGIPKIWTENWTGWFKAWDKPDFHRSAEDIAFAVAMFFQKRGSVHNYYMYHGGTNFGR
TSGGPYITTSYDYDAPLDEYGNIRQPKYGHLKDLHDLIRSMEKILVHGKYNDTSYGKNVT
VTKYMYGGSSVCFINNQFVDRDMKVTLGGETHLVPAWSVSILPNCKTVAYNTAKIKTQTS
VMVKKANSVEKEPETMRWSWMPENLKPFMTDHRGSFRQSQLLEQIATSTDQSDYLWYRTS
LEHKGEGSYTLYVNTSGHEMYAFVNGRLVGQNHSADGAFVFQLQSPVKLHSGKNYVSLLS
GTVGLKNYGPSFELVPAGIAGGPVKLVGTNGTAIDLTKSSWSYKSGLAGELRQIHLDKPG
YKWQSHNGTIPVNRPFTWYKTTFEAPAGEEAVVVDLLGLNKGVAWVNGNSLGRYWPSYTA
AEMPGCHVCDYRGKFIAEGDGIRCLTGCGEPAQRFYHVPRSFLRAGEPNTLILFEEAGGD
PTRAAFHTVAVGPVCVAAVELGDDVTLSCGGHGRVVASVDVASFGVARGSCGAYKGGCES
KAALKAFTDACVGRESCTVKYTAAFAGAGCQSGALTVQATCS

Transcript Sequence

Transcript ID

Zm00001d043393_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:198633149:198637378:-1 gene:Zm00001d043393 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

ATCTTATTTTCTCTCGCGTTCCACTCCTCTCTGTTGGCTAGCTACCACCACCGTTTCCAC
GATGACGGCGCTGCAGTTCCTGTTGCTCGCGCTCGTCGCCGTCACTCAGGTCGCGAGCGC
CACCACGGTCACCTACAACGACCGTGCACTCGTCATCGATGGTCAGCGCCGTATTATTCT
ATCAGGGTCTATTCATTACCCCAGGAGCACGCCACAGATGTGGCCTGATCTCATCAACAA
AGCTAAAGAAGGCGGCCTCAACACCATCGAAACATACGTCTTCTGGAATGGCCACGAGCC
ACGCCGCCGTCAGTATAATTTCGAGGGAAGCTACGACATCATCAGGTTCTTCAAGGAGAT
CCAGAACGCTGGAATGCATGCTATTCTTCGCATTGGTCCCTACATCTGTGGGGAATGGAA
TTACGGGGGCCTTCCTGCATGGCTGCGCGACATTCCTGGAATGCAGTTCAGGTTGCACAA
TGCCCCCTTTGAGCGCGAGATGGAGACCTTCACCACCCTCATCGTCAATAAGATGAAGGA
CGTCAACATGTTCGCAGGACAGGGAGGCCCAATCATCCTTGCTCAGATCGAGAACGAGTA
TGGAAACATCATGGGACAACTCAAGAACAACCAGTCTGCCTCGCAATACATCCACTGGTG
CGCGGACATGGCGAATAAGCAAGAGGTCGGTGTCCCGTGGATCATGTGCCAGCAGGATAA
CGATGTGCCACACAACGTCATCAACACCTGCAATGGTTTCTATTGCCACGATTGGTTCCC
GAATAGGACCGGCATTCCCAAGATATGGACAGAAAACTGGACTGGCTGGTTCAAAGCCTG
GGATAAGCCGGATTTCCATAGATCCGCTGAGGACATTGCTTTCGCGGTTGCCATGTTCTT
CCAGAAGCGTGGATCGGTCCATAACTACTACATGTACCATGGAGGAACCAATTTCGGACG
CACTTCTGGTGGCCCGTACATCACAACCAGCTATGATTACGATGCACCTTTGGATGAGTA
TGGTAACATTAGGCAGCCCAAATACGGGCACCTGAAAGATCTCCACGACCTGATCAGGTC
CATGGAGAAAATCCTTGTCCATGGGAAGTACAATGACACAAGTTATGGCAAGAATGTCAC
TGTAACCAAGTACATGTATGGTGGTTCTTCAGTTTGCTTCATCAACAACCAGTTCGTCGA
CAGGGATATGAAGGTGACCCTCGGCGGCGAAACTCACCTCGTTCCGGCATGGTCCGTCAG
CATCTTGCCCAACTGCAAGACTGTTGCCTACAACACTGCAAAGATCAAGACGCAAACATC
GGTAATGGTGAAGAAGGCCAACTCGGTGGAGAAGGAACCGGAGACCATGCGATGGTCGTG
GATGCCCGAGAACCTCAAGCCCTTCATGACAGACCACCGTGGCAGCTTCAGACAGTCACA
ACTCTTGGAGCAGATCGCAACATCCACTGATCAGAGCGACTACTTGTGGTATAGGACAAG
CCTTGAGCATAAGGGAGAGGGAAGTTACACGCTGTACGTGAACACAAGTGGCCATGAGAT
GTACGCTTTTGTAAACGGAAGGCTTGTTGGGCAAAACCACTCGGCCGATGGAGCGTTCGT
CTTCCAGCTCCAGTCTCCGGTGAAGCTCCACTCCGGAAAGAACTACGTTTCTCTCCTCAG
CGGCACAGTCGGACTCAAGAACTATGGACCTTCGTTTGAGCTTGTGCCAGCGGGCATCGC
CGGTGGGCCGGTTAAGCTTGTCGGGACAAACGGCACCGCCATTGATCTTACCAAAAGCTC
TTGGTCTTACAAGTCTGGGTTGGCCGGTGAGCTCAGGCAAATCCACCTCGACAAGCCCGG
CTACAAGTGGCAGAGCCACAACGGTACCATCCCCGTCAACCGGCCCTTCACGTGGTACAA
GACCACCTTTGAAGCTCCCGCCGGCGAGGAGGCCGTCGTGGTGGACCTGCTGGGCCTGAA
CAAGGGCGTGGCGTGGGTGAACGGCAACAGCCTTGGACGCTACTGGCCGTCCTACACCGC
GGCGGAGATGCCCGGTTGCCACGTCTGCGACTACCGGGGAAAGTTCATAGCGGAGGGCGA
TGGCATCCGCTGCCTCACGGGTTGCGGCGAGCCAGCGCAGCGCTTCTACCACGTGCCGCG
CTCCTTCCTCCGCGCCGGCGAGCCCAACACGCTCATCCTCTTCGAGGAGGCCGGCGGCGA
CCCGACACGCGCCGCGTTCCACACCGTCGCCGTGGGCCCCGTGTGCGTGGCGGCCGTCGA
GCTCGGCGACGACGTCACGCTGTCATGCGGCGGCCACGGCCGCGTCGTCGCCAGCGTCGA
CGTGGCCAGCTTCGGCGTCGCCAGGGGCAGCTGCGGCGCCTACAAGGGAGGCTGCGAGTC
CAAGGCCGCGCTCAAGGCGTTCACGGACGCGTGCGTCGGCAGGGAGTCGTGCACGGTCAA
GTACACGGCCGCGTTTGCCGGCGCAGGGTGCCAATCCGGCGCGCTCACCGTTCAGGCCAC
CTGCTCATAGCGACCCAGGCTAGATCAAGGAGAGTTTTATCTTAGCTAGATCAAGGAGAG
TTTTATCTTAGCTAGATCAGGATAGTTTTATCTTAGCTAGATCAGATGATGCATGGTTTG
GTTTGGACACTTAATGTAGTCCTCACATTTCGTTCCTCAAGATTAGTTGAATAAAAAAAC
CTAAGTACCCTTATGTTTTCTGAGATGAAAA