Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043330_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:3:196835528:196841260:-1 gene:Zm00001d043330 gene_biotype:protein_coding transcript_biotype:protein_coding description:maternal effect embryo arrest 22
Sequence

ATGTCTCAAGACCCCTCTGCTTTTCTTCCCTCAAAAAATGATTTGCTACATTTGAAATCA
AAGGTGCCTGCTACCACTTCAAATGTTGCATTATCCTTTGATGATGATCCTTTGTGTCTG
CAGCAAGGAAATAACACCATATGTGTTACTGAAGGTGACATGGATAAAGCTCCTTCATTC
AGTTTCCCTTCTAAAGTGTCTTGTGGAGGAAATGGCTGTACTAGTAGCAAGTTTGCTTCA
TTGATCCCCTTTGAGGAAATGGTCAGGGAAAACTGCTTAAAGTTGCTCAATTTGGATGAT
GATGCAGATGAGGAAAAGTTTAGAAAGGCAAAGGAGAGACCCCATTCACCAAACCTGAGC
ATCATCCGACCCCGTAGAACTAAACTGCCAACGTATGCAGAACCTCACAGCTTGGGTAGA
TCTCTCAACGGTTGTCCTGCCTTAGGATCTGATGCCATTGATTCCAAGACAAGGTCCAAA
GCATCGGAAGTTAAAGAGCCTGTAATTCAGAAATCGACTCAAAATTATATCCAGCTTGAT
CCGTCGTCAAATACAATCGAGTGTAGTGGCATTGCTAAACCTCTTTTTGTGAATGATAAA
TCCAATGCAGCTGTCAATGTTTCTTGTAGCACCAGTTTGGTTGTAGTGCCAGCGAGCACT
TCTTTTGACAGCCTTTTGCATGAGCATGTGGCCCAGAATTCTGTAGCATCTTCTGCTGAG
GCATTAGACAGTATAAGCAGACCAATGTTATCGGGAGGTGGTCATTCAGATTCCATTTTA
CATTTGTCCAAGGAAGTGTCTAACAAAAACAACTCACATCTGATTTGTGACAAATCAAGT
CCTGGGCTGCAAGCTAATGTTCGGACAAGTGAAACAACAGTGACCAAGCCAAACAATTCG
GTCTCGAATAGTTTGCTTCGGCACCATCATGGATCCGAAAACCCTCCATTGCACTTAGTT
GGATTTACAAGAATGAAAAGAAGCAAAATGATTAACATATTTCGGTATTGGGAGATACTG
AGTTCTCAATCTCAAAAGCATTCTGACGAAGCTTCAGTTGATGGTCCACTGCTTGATAAA
GTGTCAACTGACACAATGCTACCTATAGAATTCACTGAAGAAACTTTTGTGGATGGAAAT
TTTGCCTCATCAGCTTTTTCGTCGAGTGTGAAATCTCATATGGAAACAAGGTGGACCATT
CTGAGAGGGAATGACCTTGATCTTCTTAACTCCTTAATTGAAGATTTTCTCCTGAACAAA
GAAGTTGTAGTCTGCGAGAAAACAGGACAGAAGGTTTTTGGCGCAAACAAGGATCATGAA
TTGGATGATGAAACTGGTGTACAGCTATCTGTTAAACCTGCAAAAATAAATGAATTTATC
GCGGCTTGCATTCTGTTGGCTTCAATATGCGGGGAAGTTGGTAGAGTGGACATTGTATTA
GAGGTTTCGTACAAAGTTCTTCAGATGGGTAAAAGTAATATTTTGTGGACTCTACTGGCT
CTCCATGTCTTTGCTTCCATGTGTGGTGATAAGTTTCTCGCACCAAAGAGTTGCAACTTT
CTCATGACAACTATACGGTTAGTTGTCCTGCTTCTTGAGAGCAACGACACTTCTCTGTGC
CTTGTGTCATCATATATCCAGTCAAACAAGCCAACAACATTACCATCCTGTGCACATTGT
CTGTTTAATGTGGATACGGTTTCCATTGATGGCTTCATCTCTTCACTGTTGGATGAGTTG
GATTTATGTTCTCTGCAATGGAACAACCGCACCTGCTCAAATGAAAATATCACAAGGTGC
AGTTCGCATATGGTATCAAGTGGACTTGATACCAGATGTAGTGAAACTTGTAATATCTTC
AAGCAAGGAAAACTATCTGAGGATACTCATAACTACCCAGCAGAGATTAATTTATGCTAC
TTCACCGAGCTAATTTCTTTGCTCGAGCTCTTTGGGATCTATATGAGCTGCGAGTGGACA
TACAACAATGTCGTTATCCGTCTTCTGGAGATTCTGGAATTGTGCATGTGCCGTGACTAT
TCAGCTGCTCTGTTAGTACTTGTGAGCCAACTTGGAAGGTCATTTGTCGATGATGTTGGT
TACGAGGAGAGAAGTGTTAGTAAGCTAAGGAACAAATTATCGTTATTGTTAACAGGGGCA
CATTTTACAAAATCATGGAGTTTAAGTGTTCAGTTTACTGCCATTGGTGCATTGGTCAGC
GTCCTTCCACTGCCATTTGATAAAATTGTTGCCACTGGAAGTAGACAATTATCAGGTTCC
TTCGATGTGGAAATGAAACAGATTTCTGAATGGTTTGTCCAGTTAAGCAGCGAGCATCAA
TATTTAGCTCGTTCCTTTTTTAGCTGTTAG

Peptide Sequence

PEP ID

Zm00001d043330_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:3:196835528:196841260:-1 gene:Zm00001d043330 transcript:Zm00001d043330_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:maternal effect embryo arrest 22
Sequence

MSQDPSAFLPSKNDLLHLKSKVPATTSNVALSFDDDPLCLQQGNNTICVTEGDMDKAPSF
SFPSKVSCGGNGCTSSKFASLIPFEEMVRENCLKLLNLDDDADEEKFRKAKERPHSPNLS
IIRPRRTKLPTYAEPHSLGRSLNGCPALGSDAIDSKTRSKASEVKEPVIQKSTQNYIQLD
PSSNTIECSGIAKPLFVNDKSNAAVNVSCSTSLVVVPASTSFDSLLHEHVAQNSVASSAE
ALDSISRPMLSGGGHSDSILHLSKEVSNKNNSHLICDKSSPGLQANVRTSETTVTKPNNS
VSNSLLRHHHGSENPPLHLVGFTRMKRSKMINIFRYWEILSSQSQKHSDEASVDGPLLDK
VSTDTMLPIEFTEETFVDGNFASSAFSSSVKSHMETRWTILRGNDLDLLNSLIEDFLLNK
EVVVCEKTGQKVFGANKDHELDDETGVQLSVKPAKINEFIAACILLASICGEVGRVDIVL
EVSYKVLQMGKSNILWTLLALHVFASMCGDKFLAPKSCNFLMTTIRLVVLLLESNDTSLC
LVSSYIQSNKPTTLPSCAHCLFNVDTVSIDGFISSLLDELDLCSLQWNNRTCSNENITRC
SSHMVSSGLDTRCSETCNIFKQGKLSEDTHNYPAEINLCYFTELISLLELFGIYMSCEWT
YNNVVIRLLEILELCMCRDYSAALLVLVSQLGRSFVDDVGYEERSVSKLRNKLSLLLTGA
HFTKSWSLSVQFTAIGALVSVLPLPFDKIVATGSRQLSGSFDVEMKQISEWFVQLSSEHQ
YLARSFFSC

Transcript Sequence

Transcript ID

Zm00001d043330_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:196835528:196841260:-1 gene:Zm00001d043330 gene_biotype:protein_coding transcript_biotype:protein_coding description:maternal effect embryo arrest 22
Sequence

ATGATAGAGCATTGCCTTGTGGTACGCTTACAGATAGAAGAGAAACACTTGGTGGTGATA
GGAAGAGAAAACACACCAAAATGTCTCAAGACCCCTCTGCTTTTCTTCCCTCAAAAAATG
ATTTGCTACATTTGAAATCAAAGGTGCCTGCTACCACTTCAAATGTTGCATTATCCTTTG
ATGATGATCCTTTGTGTCTGCAGCAAGGAAATAACACCATATGTGTTACTGAAGGTGACA
TGGATAAAGCTCCTTCATTCAGTTTCCCTTCTAAAGTGTCTTGTGGAGGAAATGGCTGTA
CTAGTAGCAAGTTTGCTTCATTGATCCCCTTTGAGGAAATGGTCAGGGAAAACTGCTTAA
AGTTGCTCAATTTGGATGATGATGCAGATGAGGAAAAGTTTAGAAAGGCAAAGGAGAGAC
CCCATTCACCAAACCTGAGCATCATCCGACCCCGTAGAACTAAACTGCCAACGTATGCAG
AACCTCACAGCTTGGGTAGATCTCTCAACGGTTGTCCTGCCTTAGGATCTGATGCCATTG
ATTCCAAGACAAGGTCCAAAGCATCGGAAGTTAAAGAGCCTGTAATTCAGAAATCGACTC
AAAATTATATCCAGCTTGATCCGTCGTCAAATACAATCGAGTGTAGTGGCATTGCTAAAC
CTCTTTTTGTGAATGATAAATCCAATGCAGCTGTCAATGTTTCTTGTAGCACCAGTTTGG
TTGTAGTGCCAGCGAGCACTTCTTTTGACAGCCTTTTGCATGAGCATGTGGCCCAGAATT
CTGTAGCATCTTCTGCTGAGGCATTAGACAGTATAAGCAGACCAATGTTATCGGGAGGTG
GTCATTCAGATTCCATTTTACATTTGTCCAAGGAAGTGTCTAACAAAAACAACTCACATC
TGATTTGTGACAAATCAAGTCCTGGGCTGCAAGCTAATGTTCGGACAAGTGAAACAACAG
TGACCAAGCCAAACAATTCGGTCTCGAATAGTTTGCTTCGGCACCATCATGGATCCGAAA
ACCCTCCATTGCACTTAGTTGGATTTACAAGAATGAAAAGAAGCAAAATGATTAACATAT
TTCGGTATTGGGAGATACTGAGTTCTCAATCTCAAAAGCATTCTGACGAAGCTTCAGTTG
ATGGTCCACTGCTTGATAAAGTGTCAACTGACACAATGCTACCTATAGAATTCACTGAAG
AAACTTTTGTGGATGGAAATTTTGCCTCATCAGCTTTTTCGTCGAGTGTGAAATCTCATA
TGGAAACAAGGTGGACCATTCTGAGAGGGAATGACCTTGATCTTCTTAACTCCTTAATTG
AAGATTTTCTCCTGAACAAAGAAGTTGTAGTCTGCGAGAAAACAGGACAGAAGGTTTTTG
GCGCAAACAAGGATCATGAATTGGATGATGAAACTGGTGTACAGCTATCTGTTAAACCTG
CAAAAATAAATGAATTTATCGCGGCTTGCATTCTGTTGGCTTCAATATGCGGGGAAGTTG
GTAGAGTGGACATTGTATTAGAGGTTTCGTACAAAGTTCTTCAGATGGGTAAAAGTAATA
TTTTGTGGACTCTACTGGCTCTCCATGTCTTTGCTTCCATGTGTGGTGATAAGTTTCTCG
CACCAAAGAGTTGCAACTTTCTCATGACAACTATACGGTTAGTTGTCCTGCTTCTTGAGA
GCAACGACACTTCTCTGTGCCTTGTGTCATCATATATCCAGTCAAACAAGCCAACAACAT
TACCATCCTGTGCACATTGTCTGTTTAATGTGGATACGGTTTCCATTGATGGCTTCATCT
CTTCACTGTTGGATGAGTTGGATTTATGTTCTCTGCAATGGAACAACCGCACCTGCTCAA
ATGAAAATATCACAAGGTGCAGTTCGCATATGGTATCAAGTGGACTTGATACCAGATGTA
GTGAAACTTGTAATATCTTCAAGCAAGGAAAACTATCTGAGGATACTCATAACTACCCAG
CAGAGATTAATTTATGCTACTTCACCGAGCTAATTTCTTTGCTCGAGCTCTTTGGGATCT
ATATGAGCTGCGAGTGGACATACAACAATGTCGTTATCCGTCTTCTGGAGATTCTGGAAT
TGTGCATGTGCCGTGACTATTCAGCTGCTCTGTTAGTACTTGTGAGCCAACTTGGAAGGT
CATTTGTCGATGATGTTGGTTACGAGGAGAGAAGTGTTAGTAAGCTAAGGAACAAATTAT
CGTTATTGTTAACAGGGGCACATTTTACAAAATCATGGAGTTTAAGTGTTCAGTTTACTG
CCATTGGTGCATTGGTCAGCGTCCTTCCACTGCCATTTGATAAAATTGTTGCCACTGGAA
GTAGACAATTATCAGGTTCCTTCGATGTGGAAATGAAACAGATTTCTGAATGGTTTGTCC
AGTTAAGCAGCGAGCATCAATATTTAGCTCGTTCCTTTTTTAGCTGTTAGCCTATATATG
TTGGCTGGGCCTTACATGGATCAGTGAAGAATGCCCTGTGCAATTTTGATGGTCT